BAC Information

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BAC

Clone NameB6Ng01-039O15
Chromosome2 (Build37)
Map Location 118,088,032 - 118,242,828
singlet/doubletdoublet
Overlap geneGpr176, 1700054M17Rik, Eif2ak4
Upstream gene2610510H03Rik, Rasgrp1, Thbs1, Fsip1
Downstream geneSrp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039O15.bB6Ng01-039O15.g
ACCDH867043DH867044
length1,1721,113
definitionDH867043|Mus musculus domesticus DNA, BAC clone: B6Ng01-039O15, 5' end.DH867044|Mus musculus domesticus DNA, BAC clone: B6Ng01-039O15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,241,624 - 118,242,828)(118,088,032 - 118,089,152)
sequence
gaattcctgcccactctcattgctcccttttacatatgaatgccataaac
tccattcagagtggtatgcaccaaccactcctatttacactgaaattaaa
attcagatcctggtcaggcaagaaggctcagccgctaaaagtgctgtctt
aaaagcaagacgacctgagtttgatccctggaacatggaaggaaaaagct
gactttacatagctgacctccaaacaatcacacaccaacagcagagacac
agcatttcatctacataggaagctcagccgtccatcactgcagcaagttc
tactggctgtccatcacagtagcaagctcagctggccgtggcagtttaca
ttcacccctcactgaccccatagcttctcacttcccaggcacaggtgcat
ttgcagaacactcagaggcaggggctcagagtcctcactgtcccagcatg
ggcctcagccagggagtgcccattcattctctcactgtctctgacagaca
ctccctgtgactgtccctaaacacttaacctctctatatttttgtttctc
ctttctgttctcccttccctgccttcctctctcctctcctctctttcccc
tgccatggatggggagcacacgctgggaaactagattgcaaaagcaatga
acaagttgggggacagcatacagtgagcagtgaaggacagagctcattat
gcttgaacgttccttggaaaggctctgatgaagcttgctgcaggagatct
gcatggtctctaggagaagagacccgttcttttactgaaaacaaggagca
cagagggaaggaagttcccagtccctacagtcttacccataggtgtctgg
tgctggcagcagtctttaagtcaacactgaagacggactgtaggcaatgc
ctcagttccatcccctacagacctgctgggcagatactgggccaccggct
agtccttccatcctcatgttcatctgtcctggcatccccacactgcaggc
tgcactctctacacactactctggtcttcatattcaactaaagccctgtg
tttcagtccagcctcttcatcatgttcttaccactgcagcgaaaaaaaca
atactctcctcattcacttcagtttatttcttgggtctgaatagttggtg
cagatacctactggtttgagtc
gaattccataaaccaaatggaaccaactctgtgtccctcactctgttgtt
attccacactaagtccttgtttatattttgcataaaacaatcttgataag
ttaccttccgtctctatattctccccacttgattcgcttccaactgttct
cgttttgctaactgcttagaggctctgtggaccttgagagcaaactttaa
taaaccactttgttttgtattttgtcctcatttcttgcatgtacttctgc
atcatatcgagggcaacactctcaaaacagttaccattcaaatatgacag
aacgtgccatcttttcctaagctgtgttttctacagttctgtgttcttct
gtgggtactctctgaagagtgttactccttctcgaggaattcatgagtag
tttttgtagaatgaatgtattttaagctaacttcccctggtcttattcca
gggtgggcacatatggcagtgttgatttgggagttagattttgtttttgt
ttcctgtctctcctgctcttgacacccgccttctgagtggagtcagattt
gaaggactgagaaaaagcccacattgcattccatctgggctccaactgcc
agatgcagtgccccggcttccctcttcgcaccataagctcatgccaactg
taacgttgagatgggagagcatagttatcacagaccaagctcaaaagcct
tttcttcctaagggttgttaatagtgtgcgccacgatggggccccagctc
cccggattctgtgccttacatcactggaaaaaaaaaatgacatttacagg
atgctcaagacatggctcggattcttcatttcccatttatttccccacac
ccccctggttggcataatgattgtgcagatttatatttgggaaggtgagc
agcaaaagattagtgtccgctcccatcccagtcactgcagagcgaatctg
ccctgagattcaccaacaaacccactttctcggctctttccagggccgac
tttgacaaggttatttgcgtccactagatgggtgctgttatctgtggaat
gactaacccccacttcaaagtcttgccttctatggatgttaagggtggga
ttaagaggaccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_118241624_118242828
seq2: B6Ng01-039O15.b_44_1215 (reverse)

seq1  GACTCATAAAACACAGTAGGTGATCATGCCACCAACTAAATTCAAAGAAC  50
      |||||   |||| |||||||| ||| || ||||||||  ||||| |    
seq2  GACTC---AAAC-CAGTAGGT-ATC-TG-CACCAACT--ATTCAGA----  37

seq1  CACAAGAAAATAAAACTGAAGTTGACAGTGGAGGAGGAAGGTATTGGTTT  100
      | |||||||   |||||||       |||| | |||||  ||||||  ||
seq2  CCCAAGAAA--TAAACTGA-------AGTGAATGAGGAGAGTATTG--TT  76

seq1  ATTTTCGCTGCAGTGGTAGAGACATGAATGATAGAGGCTGGACTGAAAAC  150
       |||||||||||||||||   ||||| |||| ||||||||||||| ||||
seq2  TTTTTCGCTGCAGTGGTAAGAACATG-ATGA-AGAGGCTGGACTG-AAAC  123

seq1  ACAGGGCTCTAGTTTGAATATGAAGACCCAGAGTAAGTGTGTAGAGAGTG  200
      |||||||| ||| ||||||||||||| ||||||| |||||||||||||||
seq2  ACAGGGCTTTAG-TTGAATATGAAGA-CCAGAGT-AGTGTGTAGAGAGTG  170

seq1  CAGCCTGCAGTGTGGGGATGCAAGGAACAGATTGAACATTGAGGATGGAA  250
      ||||||||||||||||||||| ||| ||||| |||||| |||||||||||
seq2  CAGCCTGCAGTGTGGGGATGCCAGG-ACAGA-TGAACA-TGAGGATGGAA  217

seq1  GGACTAGCCGGTGGGCCAGTATCTGGCCAGCAGGTCTGTAGGGGATGGAA  300
      |||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  GGACTAGCCGGTGGCCCAGTATCTGCCCAGCAGGTCTGTAGGGGATGGAA  267

seq1  CTGAGGCATTGCCTACAGTCCGTCTTCAGTGTTGACTTAAAGACTGCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCATTGCCTACAGTCCGTCTTCAGTGTTGACTTAAAGACTGCTGC  317

seq1  CAGCACCAGACACCTATGGGTAAGACTGTAGGGACTGGGAACTTCCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCAGACACCTATGGGTAAGACTGTAGGGACTGGGAACTTCCTTCC  367

seq1  CTCTGTGCTCCTTGTTTTCAGTAAAAGAACGGGTCTCTTCTCCTAGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCTCCTTGTTTTCAGTAAAAGAACGGGTCTCTTCTCCTAGAGAC  417

seq1  CATGCAGATCTCCTGCAGCAAGCTTCATCAGAGCCTTTCCAAGGAACGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGATCTCCTGCAGCAAGCTTCATCAGAGCCTTTCCAAGGAACGTT  467

seq1  CAAGCATAATGAGCTCTGTCCTTCACTGCTCACTGTATGCTGTCCCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATAATGAGCTCTGTCCTTCACTGCTCACTGTATGCTGTCCCCCAA  517

seq1  CTTGTTCATTGCTTTTGCAATCTAGTTTCCCAGCGTGTGCTCCCCATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCATTGCTTTTGCAATCTAGTTTCCCAGCGTGTGCTCCCCATCCA  567

seq1  TGGCAGGGGAAAGAGAGGAGAGGAGAGAGGAAGGCAGGGAAGGGAGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGGGAAAGAGAGGAGAGGAGAGAGGAAGGCAGGGAAGGGAGAACA  617

seq1  GAAAGGAGAAACAAAAATATAGAGAGGTTAAGTGTTTAGGGACAGTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGAAACAAAAATATAGAGAGGTTAAGTGTTTAGGGACAGTCACA  667

seq1  GGGAGTGTCTGTCAGAGACAGTGAGAGAATGAATGGGCACTCCCTGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGTCTGTCAGAGACAGTGAGAGAATGAATGGGCACTCCCTGGCTG  717

seq1  AGGCCCATGCTGGGACAGTGAGGACTCTGAGCCCCTGCCTCTGAGTGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCATGCTGGGACAGTGAGGACTCTGAGCCCCTGCCTCTGAGTGTTC  767

seq1  TGCAAATGCACCTGTGCCTGGGAAGTGAGAAGCTATGGGGTCAGTGAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATGCACCTGTGCCTGGGAAGTGAGAAGCTATGGGGTCAGTGAGGG  817

seq1  GTGAATGTAAACTGCCACGGCCAGCTGAGCTTGCTACTGTGATGGACAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGTAAACTGCCACGGCCAGCTGAGCTTGCTACTGTGATGGACAGC  867

seq1  CAGTAGAACTTGCTGCAGTGATGGACGGCTGAGCTTCCTATGTAGATGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAACTTGCTGCAGTGATGGACGGCTGAGCTTCCTATGTAGATGAA  917

seq1  ATGCTGTGTCTCTGCTGTTGGTGTGTGATTGTTTGGAGGTCAGCTATGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTGTCTCTGCTGTTGGTGTGTGATTGTTTGGAGGTCAGCTATGTA  967

seq1  AAGTCAGCTTTTTCCTTCCATGTTCCAGGGATCAAACTCAGGTCGTCTTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGCTTTTTCCTTCCATGTTCCAGGGATCAAACTCAGGTCGTCTTG  1017

seq1  CTTTTAAGACAGCACTTTTAGCGGCTGAGCCTTCTTGCCTGACCAGGATC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAGACAGCACTTTTAGCGGCTGAGCCTTCTTGCCTGACCAGGATC  1067

seq1  TGAATTTTAATTTCAGTGTAAATAGGAGTGGTTGGTGCATACCACTCTGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTAATTTCAGTGTAAATAGGAGTGGTTGGTGCATACCACTCTGA  1117

seq1  ATGGAGTTTATGGCATTCATATGTAAAAGGGAGCAATGAGAGTGGGCAGG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTTTATGGCATTCATATGTAAAAGGGAGCAATGAGAGTGGGCAGG  1167

seq1  AATTC  1205
      |||||
seq2  AATTC  1172

seq1: chr2_118088032_118089152
seq2: B6Ng01-039O15.g_68_1180

seq1  GAATTCCATAAACCAAATGGAACCAACTCTGTGTCCCTCACTCTGTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAACCAAATGGAACCAACTCTGTGTCCCTCACTCTGTTGTT  50

seq1  ATTCCACACTAAGTCCTTGTTTATATTTTGCATAAAACAATCTTGATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACACTAAGTCCTTGTTTATATTTTGCATAAAACAATCTTGATAAG  100

seq1  TTACCTTCCGTCTCTATATTCTCCCCACTTGATTCGCTTCCAACTGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTCCGTCTCTATATTCTCCCCACTTGATTCGCTTCCAACTGTTCT  150

seq1  CGTTTTGCTAACTGCTTAGAGGCTCTGTGGACCTTGAGAGCAAACTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTGCTAACTGCTTAGAGGCTCTGTGGACCTTGAGAGCAAACTTTAA  200

seq1  TAAACCACTTTGTTTTGTATTTTGTCCTCATTTCTTGCATGTACTTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCACTTTGTTTTGTATTTTGTCCTCATTTCTTGCATGTACTTCTGC  250

seq1  ATCATATCGAGGGCAACACTCTCAAAACAGTTACCATTCAAATATGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATCGAGGGCAACACTCTCAAAACAGTTACCATTCAAATATGACAG  300

seq1  AACGTGCCATCTTTTCCTAAGCTGTGTTTTCTACAGTTCTGTGTTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGCCATCTTTTCCTAAGCTGTGTTTTCTACAGTTCTGTGTTCTTCT  350

seq1  GTGGGTACTCTCTGAAGAGTGTTACTCCTTCTCGAGGAATTCATGAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTACTCTCTGAAGAGTGTTACTCCTTCTCGAGGAATTCATGAGTAG  400

seq1  TTTTTGTAGAATGAATGTATTTTAAGCTAACTTCCCCTGGTCTTATTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTAGAATGAATGTATTTTAAGCTAACTTCCCCTGGTCTTATTCCA  450

seq1  GGGTGGGCACATATGGCAGTGTTGATTTGGGAGTTAGATTTTGTTTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGCACATATGGCAGTGTTGATTTGGGAGTTAGATTTTGTTTTTGT  500

seq1  TTCCTGTCTCTCCTGCTCTTGACACCCGCCTTCTGAGTGGAGTCAGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCTCTCCTGCTCTTGACACCCGCCTTCTGAGTGGAGTCAGATTT  550

seq1  GAAGGACTGAGAAAAAGCCCACATTGCATTCCATCTGGGCTCCAACTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACTGAGAAAAAGCCCACATTGCATTCCATCTGGGCTCCAACTGCC  600

seq1  AGATGCAGTGCCCCGGCTTCCCTCTTCGCACCATAAGCTCATGCCAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGTGCCCCGGCTTCCCTCTTCGCACCATAAGCTCATGCCAACTG  650

seq1  TAACGTTGAGATGGGAGAGCATAGTTATCACAGACCAAGCTCAAAAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTTGAGATGGGAGAGCATAGTTATCACAGACCAAGCTCAAAAGCCT  700

seq1  TTTCTTCCTAAGGGTTGTTAATAGTGTGCGCCACGATGGGGCCCCAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCTAAGGGTTGTTAATAGTGTGCGCCACGATGGGGCCCCAGCTC  750

seq1  CCCGGATTCTGTGCCTTACATCACTGGAAAAAAAAAATGACATTTACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGATTCTGTGCCTTACATCACTGGAAAAAAAAAATGACATTTACAGG  800

seq1  ATGCTCAAGACATGGCTCGGATTCTTCATTTCCCATTTATTTCCCCACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCAAGACATGGCTCGGATTCTTCATTTCCCATTTATTTCCCCACAC  850

seq1  CCCCCTGGTTGGCATAATGATTGTGCAGATTTATATTTGGGAAGGTGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGGTTGGCATAATGATTGTGCAGATTTATATTTGGGAAGGTGAGC  900

seq1  AGCAAAAGATTAGTGTCCGCTCCCCATCCCCAGTCACTGCAGAGCGAATC  950
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  AGCAAAAGATTAGTGTCCGCT-CCCAT-CCCAGTCACTGCAGAGCGAATC  948

seq1  TGCCCTGAGATTCCACCAAC-AACCCACTTTCTCGGCCTCTTCCAGGGCC  999
      |||||||||||| ||||||| ||||||||||||||||   |||||||| |
seq2  TGCCCTGAGATT-CACCAACAAACCCACTTTCTCGGCTCTTTCCAGGG-C  996

seq1  CGACTTTGACAAAGGGTTATTTGCGTCCACTAGAT-GGTGCTGGTTATCT  1048
      ||||||||||||  ||||||||||||||||||||| |||||| |||||||
seq2  CGACTTTGACAA--GGTTATTTGCGTCCACTAGATGGGTGCT-GTTATCT  1043

seq1  GTGGAAATGACTAACCCCCACCTTCAAAAGTTCTTGCTTTCCTAGGATGT  1098
      |||| ||||||||||||||| |||||||   |||||| |||   ||||||
seq2  GTGG-AATGACTAACCCCCA-CTTCAAA--GTCTTGCCTTCTATGGATGT  1089

seq1  TAA-GGTGTGATTTAAGA-GACCAC  1121
      ||| |||| || |||||| ||||||
seq2  TAAGGGTGGGA-TTAAGAGGACCAC  1113