BAC Information

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BAC

Clone NameB6Ng01-039P02
Chromosome2 (Build37)
Map Location 176,920,263 - 177,054,856
singlet/doubletdoublet
Overlap gene6230416C02Rik, LOC100043403, LOC100039198, LOC100043406
Upstream geneOTTMUSG00000016203, LOC100039060, LOC668030, LOC627914, LOC100039093, LOC668039, LOC100039109, LOC100043381, LOC100043387, LOC100039123, LOC626877, LOC100039156, LOC100039166, LOC635470
Downstream geneLOC668066, LOC621442, LOC628308, OTTMUSG00000016571, LOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039P02.bB6Ng01-039P02.g
ACCDH867063DH867064
length953912
definitionDH867063|Mus musculus domesticus DNA, BAC clone: B6Ng01-039P02, 5' end.DH867064|Mus musculus domesticus DNA, BAC clone: B6Ng01-039P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(177,053,907 - 177,054,856)(176,920,263 - 176,921,171)
sequence
gaattcatgatgccattaagaatttttactaattaatatttttgttgtgt
atgcagtgattactttctgggatgacatgttaattctgggagagctgtct
cttcttccccttatagagatgtttctaagacaagctatgttgactcaggt
agccttgatcctggtctgctgctccccagggcaatgaccttgctttcctc
ttgatataaatttctaaattcttgagttaaagaatgtagcaaagtagtgt
tttataattgctcatttgagttatataatgaactgttcatttcttccacc
ttcagtagagaacaggagcaatggtttactgtgatctctgtcaggtgaag
tagggcaggagacggctagatcatagacgaaagcttaagggaatctgctc
caggtgtcactattctagagatacgagtcaggcagggtgaatacttttgt
aatttcactaaatgtattaaataatgcatgttattaaataaaactagatt
ggtgtgtgcttaatttgtgcaagttagcttgagccaatgataatgaattt
ctgttttaggatctgtactatatagatattatgtatcagaaatgtaaaac
acatgccattagctgtagctgtgtgtatcacattatagatctcagtagtt
aacaaagcacataggggcaaggtcaaacactatcttattaatgccatttg
ttctaccagaaagggcatgatcttttccaaatcagtacggtaatatattt
tttcaattatttttatctttttaaaaagttattttttcggttttactttt
taaatttcattttcagtatccataggtgacctcttatgtgtttctatttc
tccaatatttacccgaaaattaagaattccatttcctttttttttttttt
tttttccgagacaaggtttctctgtggaatcctgggtgtcctgagaactc
act
gaattcccattttatgatctgtattatgagatatgtgcaaaccttggtga
catatttaagtgatctcagaaatataaacacatgccattagctgtagctg
tgtgtgtcacattatagatctcagtagttaacaaagatcgtaggggcaag
ttcaaacactatcttattattgccattccttctaccaggaagggcatgat
ctttttcaaatcagtacagtaatatattttttcatttatttttttctttt
taaaaagttcatttttggtattagattttaaatttcattttgactatcca
tgggtgatctcttaagtgtttcttttctccaatattgccccaaaattaag
aatttcattcctgtttttaaagagatttcatatctgtctgtttagagaaa
catctcctgtagctcctactttctttatgccatgtagttaaaacttgctt
tgaactcctaatcctccctctgctgcccagggcttggaaaacagtcctac
aactcctgtcaagctgggttctgactgatcagtgagacaaaagacaccag
ggaatgagtgttgtctaacctccctgggttacagggttaaaaattagggg
gttacaaataaagaggaacaggtataaggttgagttcactgaccaacttt
gaagctggtctacttgcagcacagaagaggaggaggaataaggtaggtga
ggcctttctgctttggcagtagttgacattcaccatgaggagtcaagtaa
tcaatttttgcacaatcagttaaattccatactggtcatctttggggcat
ttttcagattaggggcaatgtcaaatgagatcacaggcccctcgttgtga
cacaatattctggcatacctcgccatctaccccagcagtaggactgccaa
tctcccagctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_177053907_177054856
seq2: B6Ng01-039P02.b_43_995 (reverse)

seq1  AGTGAGTTC-CAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAA  49
      ||||||||| ||||||| |||||| | |||||||||||| |||||||  |
seq2  AGTGAGTTCTCAGGACACCCAGGATTCCACAGAGAAACCTTGTCTCG-GA  49

seq1  AAAAAAAAAAAAAAAAAAAGGAATGGAATTCTTAATTTTCGGGT-AATAT  98
      |||||||||||||||||| | ||||||||||||||||||||||| |||||
seq2  AAAAAAAAAAAAAAAAAAGGAAATGGAATTCTTAATTTTCGGGTAAATAT  99

seq1  TGGAG-AATAGAAACACATAAGAGGTCACCTATGGATACTGAAAATGAAA  147
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAATAGAAACACATAAGAGGTCACCTATGGATACTGAAAATGAAA  149

seq1  TTTAAAAAGTAAAACCG-AAAAATAACTTTTTAAAAAGATAAAAATAATT  196
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTAAAAAGTAAAACCGAAAAAATAACTTTTTAAAAAGATAAAAATAATT  199

seq1  GAAAAAATATATTACCGTACTGATTTGGAAAAGATCATGCCCTTTCTGGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATATATTACCGTACTGATTTGGAAAAGATCATGCCCTTTCTGGT  249

seq1  AGAACAAATGGCATTAATAAGATAGTGTTTGACCTTGCCCCTATGTGCTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAATGGCATTAATAAGATAGTGTTTGACCTTGCCCCTATGTGCTT  299

seq1  TGTTAACTACTGAGATCTATAATGTGATACACACAGCTACAGCTAATGGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACTACTGAGATCTATAATGTGATACACACAGCTACAGCTAATGGC  349

seq1  ATGTGTTTTACATTTCTGATACATAATATCTATATAGTACAGATCCTAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTTACATTTCTGATACATAATATCTATATAGTACAGATCCTAAA  399

seq1  ACAGAAATTCATTATCATTGGCTCAAGCTAACTTGCACAAATTAAGCACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATTCATTATCATTGGCTCAAGCTAACTTGCACAAATTAAGCACA  449

seq1  CACCAATCTAGTTTTATTTAATAACATGCATTATTTAATACATTTAGTGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATCTAGTTTTATTTAATAACATGCATTATTTAATACATTTAGTGA  499

seq1  AATTACAAAAGTATTCACCCTGCCTGACTCGTATCTCTAGAATAGTGACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAAAAGTATTCACCCTGCCTGACTCGTATCTCTAGAATAGTGACA  549

seq1  CCTGGAGCAGATTCCCTTAAGCTTTCGTCTATGATCTAGCCGTCTCCTGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGCAGATTCCCTTAAGCTTTCGTCTATGATCTAGCCGTCTCCTGC  599

seq1  CCTACTTCACCTGACAGAGATCACAGTAAACCATTGCTCCTGTTCTCTAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTCACCTGACAGAGATCACAGTAAACCATTGCTCCTGTTCTCTAC  649

seq1  TGAAGGTGGAAGAAATGAACAGTTCATTATATAACTCAAATGAGCAATTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTGGAAGAAATGAACAGTTCATTATATAACTCAAATGAGCAATTA  699

seq1  TAAAACACTACTTTGCTACATTCTTTAACTCAAGAATTTAGAAATTTATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACACTACTTTGCTACATTCTTTAACTCAAGAATTTAGAAATTTATA  749

seq1  TCAAGAGGAAAGCAAGGTCATTGCCCTGGGGAGCAGCAGACCAGGATCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGGAAAGCAAGGTCATTGCCCTGGGGAGCAGCAGACCAGGATCAA  799

seq1  GGCTACCTGAGTCAACATAGCTTGTCTTAGAAACATCTCTATAAGGGGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACCTGAGTCAACATAGCTTGTCTTAGAAACATCTCTATAAGGGGAA  849

seq1  GAAGAGACAGCTCTCCCAGAATTAACATGTCATCCCAGAAAGTAATCACT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGACAGCTCTCCCAGAATTAACATGTCATCCCAGAAAGTAATCACT  899

seq1  GCATACACAACAAAAATATTAATTAGTAAAAATTCTTAATGGCATCATGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACACAACAAAAATATTAATTAGTAAAAATTCTTAATGGCATCATGA  949

seq1  ATTC  950
      ||||
seq2  ATTC  953

seq1: chr2_176920263_176921171
seq2: B6Ng01-039P02.g_70_981

seq1  GAATTCCCATTTTATGATCTGTATTATGAGATATGTGCAAACCTTGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTTTATGATCTGTATTATGAGATATGTGCAAACCTTGGTGA  50

seq1  CATATTTAAGTGATCTCAGAAATATAAACACATGCCATTAGCTGTAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTAAGTGATCTCAGAAATATAAACACATGCCATTAGCTGTAGCTG  100

seq1  TGTGTGTCACATTATAGATCTCAGTAGTTAACAAAGATCGTAGGGGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCACATTATAGATCTCAGTAGTTAACAAAGATCGTAGGGGCAAG  150

seq1  TTCAAACACTATCTTATTATTGCCATTCCTTCTACCAGGAAGGGCATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACACTATCTTATTATTGCCATTCCTTCTACCAGGAAGGGCATGAT  200

seq1  CTTTTTCAAATCAGTACAGTAATATATTTTTTCATTTATTTTTTTCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCAAATCAGTACAGTAATATATTTTTTCATTTATTTTTTTCTTTT  250

seq1  TAAAAAGTTCATTTTTGGTATTAGATTTTAAATTTCATTTTGACTATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTTCATTTTTGGTATTAGATTTTAAATTTCATTTTGACTATCCA  300

seq1  TGGGTGATCTCTTAAGTGTTTCTTTTCTCCAATATTGCCCCAAAATTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGATCTCTTAAGTGTTTCTTTTCTCCAATATTGCCCCAAAATTAAG  350

seq1  AATTTCATTCCTGTTTTTAAAGAGATTTCATATCTGTCTGTTTAGAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATTCCTGTTTTTAAAGAGATTTCATATCTGTCTGTTTAGAGAAA  400

seq1  CATCTCCTGTAGCTCCTACTTTCTTTATGCCATGTAGTTAAAACTTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTGTAGCTCCTACTTTCTTTATGCCATGTAGTTAAAACTTGCTT  450

seq1  TGAACTCCTAATCCTCCCTCTGCTGCCCAGGGCTTGGAAAACAGTCCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCCTAATCCTCCCTCTGCTGCCCAGGGCTTGGAAAACAGTCCTAC  500

seq1  AACTCCTGTCAAGCTGGGTTCTGACTGATCAGTGAGACAAAAGACACCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGTCAAGCTGGGTTCTGACTGATCAGTGAGACAAAAGACACCAG  550

seq1  GGAATGAGTGTTGTCTAACCTCCCTGGGTTACAGGGTTAAAAATTAGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAGTGTTGTCTAACCTCCCTGGGTTACAGGGTTAAAAATTAGGGG  600

seq1  GTTACAAATAAAGAGGAACAGGTATAAGGTTGAGTTCACTGACCAACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAAATAAAGAGGAACAGGTATAAGGTTGAGTTCACTGACCAACTTT  650

seq1  GAAGCTGGTCTACTTGCAGCACAGAAGAGGAGGAGGAATAAGGTAGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGGTCTACTTGCAGCACAGAAGAGGAGGAGGAATAAGGTAGGTGA  700

seq1  GGCCTTTCTGCTTTGGCAGTAGTTGACATTCACCATGAGGAGTCAAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTCTGCTTTGGCAGTAGTTGACATTCACCATGAGGAGTCAAGTAA  750

seq1  TCAA-TTTTGCACAATCAGTTAAATTCCATACTGGTCATC-TTCGGGCAT  798
      |||| ||||||||||||||||||||||||||||||||||| || ||||||
seq2  TCAATTTTTGCACAATCAGTTAAATTCCATACTGGTCATCTTTGGGGCAT  800

seq1  TTTTCAGATTA-GGGCAATGTCAAATGAGATCACAGG-CCCTCGTTGTGA  846
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  TTTTCAGATTAGGGGCAATGTCAAATGAGATCACAGGCCCCTCGTTGTGA  850

seq1  CACCATATTGCTGGCATACCTCGCCATCTACCCCAGCAGTAGGACTGCCA  896
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CACAATATT-CTGGCATACCTCGCCATCTACCCCAGCAGTAGGACTGCCA  899

seq1  ATCTCCCAGCTGC  909
      |||||||||||||
seq2  ATCTCCCAGCTGC  912