BAC Information

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BAC

Clone NameB6Ng01-040A09
Chromosome2 (Build37)
Map Location 111,206,990 - 111,208,106
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668799, Slc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282
Downstream geneOlfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040A09.bB6Ng01-040A09.g
ACCDH867119DH867120
length1,0571,106
definitionDH867119|Mus musculus domesticus DNA, BAC clone: B6Ng01-040A09, 5' end.DH867120|Mus musculus domesticus DNA, BAC clone: B6Ng01-040A09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacttgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcgacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaaaaggaacactcattcattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtcgggtggttcctca
gaaaattggacatagtactactggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtccatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
ggaactcacacaatatgtactcattgataagtggatattagcccaaaaac
ttagggtacccaagacataagatacaatttgctaaacgcatgaaacacaa
gaagaatgaagaccaaagtgtggacactttgccccttcttagaattggga
acaaaacacccatggaaggagttacagagacaaagtttggagctgtgagg
aaaggatggaccatctagtgattgccatatccagggatccatcccataat
cagcttccaaacgctgacactattgcatacattagcaagattttgctgaa
aggacccagatatagctgtctcttgtgagactatgcccggggcctagcaa
acagagaagttagatgttcacagtctgctattggaggattcatagggcct
ccatggaggagctagagaaagttcccaagtggctaaagggactgcaacct
tataggtgaagaccatatgacctaacagtacccggagcttcttgtccttt
gctgcat
gaattcataaaatcctgtctacatttctgtctcaatttttcttttttttc
tcttttctttctttaacatcatccctccatttatttctcttgaatttttc
cctcttctttatttctgtactttttaatattatatttaagtttaaaatta
gaagaccaaaatgtcaccaaattagggaatattttgcaatttctgtgtta
ggaattaaaagaactgttacatttaaagaattttaaaaatattatatttt
attaataatattgcatatttatttcctgggtcgatctcaataaagtagta
aaactgtagtgcaaaataaggtaattctaaattcaagtccccaatattac
ttccagactatgaaataaatgatatgataggaatcatgattttcagtagt
ccaagaaaattaatgaaatttgtaaaacaaggtacttgtccatttaaata
tgtatacacataaatataaatgagaaatttcattaataaaaattatcaga
tttaaatatcaagcaaatataacccaaccctttgaatatcaatggcattt
cacatatattcttttctcattgttgaattctgagagaactatgattagtc
tatgcacagccactctcatctccctccaatctcaattaactactctacta
tattgtctgtatcttgagaaaatagtacacccaataatataatcagataa
cattagagtaagtttagtgacctatgagtatgatattcattcaagttgag
aaaattggaacttttaagcttacagtaagagatcattagatgtgagcata
taaaatactttaagtgtccaaagtctcaaggattagttggaagggaaatt
ttctactatatatttgtcaaacaaaacaattaaatacaaatacaagactc
actgtaaaatcatcaaagaaagtaataaaataatatgctacttaaacaac
aaactttaaatgagtattgtgatgaggatgaaagcacaattaattgtgat
gtatcactacacacttgcaagacagtcctcccttttgatgatgtttcttg
tatttgcccttaaatacaatctcttacattgtggtttctgcttgaccatt
gtgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_111206990_111208106
seq2: B6Ng01-040A09.g_66_1171 (reverse)

seq1  CAGCACAATTGGTCAAAGCAGAAACCACAATGTAAGAGATTTGTATTTAA  50
      |||||||| ||||| |||||||||||||||||||||||| ||||||||||
seq2  CAGCACAA-TGGTC-AAGCAGAAACCACAATGTAAGAGA-TTGTATTTAA  47

seq1  GGGCGAATTACAGGAAACATCATCCAAAAGGGAGGACTTGTCTTGCAAGG  100
      |||| || |||| |||||||||| ||||||||||||| |||||||||| |
seq2  GGGC-AAATACAAGAAACATCAT-CAAAAGGGAGGAC-TGTCTTGCAA-G  93

seq1  TGTGTAGTGAATACATCACAAATTAATTGTGCTTTCATTCTTCATCACAA  150
      ||||||||| ||||||||| ||||||||||||||||| || |||||||||
seq2  TGTGTAGTG-ATACATCAC-AATTAATTGTGCTTTCA-TCCTCATCACAA  140

seq1  TTACTCATTTAAGGTTTGTTTGTTTTAGTAGCATATTATTTTATTAC-TT  199
       ||||||||||| ||||| |||||| ||||||||||||||||||||| ||
seq2  -TACTCATTTAAAGTTTG-TTGTTTAAGTAGCATATTATTTTATTACTTT  188

seq1  CTTTGATGATTTTACAGTGAGTCTTGTATTTGTATTTAATTGTTTTGTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATGATTTTACAGTGAGTCTTGTATTTGTATTTAATTGTTTTGTTT  238

seq1  GACAAATATATAGTAGAAAATTTCCCTTCCAACTAATCCTTGAGACTTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATATATAGTAGAAAATTTCCCTTCCAACTAATCCTTGAGACTTTG  288

seq1  GACACTTAAAGTATTTTATATGCTCACATCTAATGATCTCTTACTGTAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTAAAGTATTTTATATGCTCACATCTAATGATCTCTTACTGTAAG  338

seq1  CTTAAAAGTTCCAATTTTCTCAACTTGAATGAATATCATACTCATAGGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGTTCCAATTTTCTCAACTTGAATGAATATCATACTCATAGGTC  388

seq1  ACTAAACTTACTCTAATGTTATCTGATTATATTATTGGGTGTACTATTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACTTACTCTAATGTTATCTGATTATATTATTGGGTGTACTATTTT  438

seq1  CTCAAGATACAGACAATATAGTAGAGTAGTTAATTGAGATTGGAGGGAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGATACAGACAATATAGTAGAGTAGTTAATTGAGATTGGAGGGAGA  488

seq1  TGAGAGTGGCTGTGCATAGACTAATCATAGTTCTCTCAGAATTCAACAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTGGCTGTGCATAGACTAATCATAGTTCTCTCAGAATTCAACAAT  538

seq1  GAGAAAAGAATATATGTGAAATGCCATTGATATTCAAAGGGTTGGGTTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGAATATATGTGAAATGCCATTGATATTCAAAGGGTTGGGTTAT  588

seq1  ATTTGCTTGATATTTAAATCTGATAATTTTTATTAATGAAATTTCTCATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTGATATTTAAATCTGATAATTTTTATTAATGAAATTTCTCATT  638

seq1  TATATTTATGTGTATACATATTTAAATGGACAAGTACCTTGTTTTACAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATGTGTATACATATTTAAATGGACAAGTACCTTGTTTTACAAA  688

seq1  TTTCATTAATTTTCTTGGACTACTGAAAATCATGATTCCTATCATATCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTAATTTTCTTGGACTACTGAAAATCATGATTCCTATCATATCAT  738

seq1  TTATTTCATAGTCTGGAAGTAATATTGGGGACTTGAATTTAGAATTACCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCATAGTCTGGAAGTAATATTGGGGACTTGAATTTAGAATTACCT  788

seq1  TATTTTGCACTACAGTTTTACTACTTTATTGAGATCGACCCAGGAAATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCACTACAGTTTTACTACTTTATTGAGATCGACCCAGGAAATAA  838

seq1  ATATGCAATATTATTAATAAAATATAATATTTTTAAAATTCTTTAAATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAATATTATTAATAAAATATAATATTTTTAAAATTCTTTAAATGT  888

seq1  AACAGTTCTTTTAATTCCTAACACAGAAATTGCAAAATATTCCCTAATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTCTTTTAATTCCTAACACAGAAATTGCAAAATATTCCCTAATTT  938

seq1  GGTGACATTTTGGTCTTCTAATTTTAAACTTAAATATAATATTAAAAAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATTTTGGTCTTCTAATTTTAAACTTAAATATAATATTAAAAAGT  988

seq1  ACAGAAATAAAGAAGAGGGAAAAATTCAAGAGAAATAAATGGAGGGATGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATAAAGAAGAGGGAAAAATTCAAGAGAAATAAATGGAGGGATGA  1038

seq1  TGTTAAAGAAAGAAAAGAGAAAAAAAAGAAAAATTGAGACAGAAATGTAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAGAAAGAAAAGAGAAAAAAAAGAAAAATTGAGACAGAAATGTAG  1088

seq1  ACAGGATTTTATGAATTC  1117
      ||||||||||||||||||
seq2  ACAGGATTTTATGAATTC  1106