BAC Information

Click to search

BAC

Clone NameB6Ng01-040C01
Chromosome2 (Build37)9 (Build37)
Map Location 142,776,574 - 142,777,69889,648,778 - 89,649,831
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040C01.bB6Ng01-040C01.g
ACCDH867190DH867191
length9701,043
definitionDH867190|Mus musculus domesticus DNA, BAC clone: B6Ng01-040C01, 5' end.DH867191|Mus musculus domesticus DNA, BAC clone: B6Ng01-040C01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,574 - 142,777,698)(89,648,778 - 89,649,831)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagacgagtaatatttcttaatctgttttttttttttttt
tagaatagattgtttagaataaatgttaagttttcttcagatgattaaca
tggtattggaagccctactagctcataaaggaaaaaaaaaggaaaataaa
gaagacttgaaacaaaacaaacaaacaaacaaacaaccccagaatcatga
ggttagtaaggagggaagccaaagtacaaacacagaaatttatattactt
tttgtagtatcagtaaacacatggacatcctaggttaaaatcttttagag
atggtttatttgctaaagtg
gaattccttagtggctatatcactttgcactccaacagagaatatgtgtt
gcttttccccggtgccactccaccattaataatcatctgtgttaataacc
ttcattattctgcatgaaataagataaaatcttaaagttgttttaattat
catttccctgatggctaatggtgttggacattgtaaacatatttctcaat
tattagtattttatcctttgagaacacttcatttagttctatgccataat
tttaattggattgttctttttttactttgttatagaaaaaaagagcttgt
taaataaataaagaacatcatacacaaaaattaaccagctccaaagaccg
tgcaatataatgaacttacaagcaattacaattgacactccaaaatggga
tctgtgaagcttgtgctatatttatgcatttatccacaccaaaacaaaac
aaaacaaaatctatgacagaattagaactagaaaaacgtatgcctgcatt
cagttcttctgtagtgcctcatatttagctttccttgttcccttttgttc
gctgtatactgtacccaaaaaagtacagtatatataagtacagtatatat
atataatctagccatatatatatatggctagattccacacacaagtgaga
acgtgtgccttgttctttctgagatggtgtgacttctcttaatatacatc
tgagctcccctattttctctgtaaaattttaacttcacttacctttagaa
ctgagtaatatgtgtgtgtgtgcacgcgcgtgcgtgtgtgtgtgtgtgtg
tgtgtgcgcgcgcgcacgcgcatgtgattttaattattcatttatctatt
gatggacaactaggttgattccaattcctttctatagtgaataacaatac
agcaataacatcgggtacaactacctctataatagatgtaaaataccgag
tcatatgatagtctatttttatttttgagaatctctaacttattttacaa
ggctatattacttgcatcccatagacattcctctctttctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776574_142777698
seq2: B6Ng01-040C01.b_46_710 (reverse)

seq1  GTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTA  50
      |||||||||||||||||||||| ||||| |||||||||||||| ||||||
seq2  GTCTTCTCAAGGATAAAAGAACTTCTGGCGGAATCACCATGCCAGACCTA  50

seq1  AAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAG  100

seq1  AGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACC  150

seq1  CACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAG  200

seq1  AGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTT  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTT  250

seq1  ATCATGTAGAAGAATGGGAATCGATCCATACTTATCTCCTTGTACTAAGG  300
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATCGTGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGG  300

seq1  TCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAA  350

seq1  CTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGA  400

seq1  CAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTG  450
       ||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATCG  450

seq1  ACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACC  500

seq1  GTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTA  550

seq1  TCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGA  600

seq1  AGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAA  650

seq1  AACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACA  700
                  ||| |||||    |||                      
seq2  ----------CTGAACAAAGA----ATTC---------------------  665

seq1  ACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCT  750
                                                        
seq2  --------------------------------------------------  665

seq1  TGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGA  800
                                                        
seq2  --------------------------------------------------  665

seq1  GACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGG  850
                                                        
seq2  --------------------------------------------------  665

seq1  GCACAGGGGAAAAATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGA  900
                                                        
seq2  --------------------------------------------------  665

seq1  TCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGC  950
                                                        
seq2  --------------------------------------------------  665

seq1  AAAAGACACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGA  1000
                                                        
seq2  --------------------------------------------------  665

seq1  TCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAA  1050
                                                        
seq2  --------------------------------------------------  665

seq1  GAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATG  1100
                                                        
seq2  --------------------------------------------------  665

seq1  GGGCTCAGAACTGAACAAAGAATTC  1125
                               
seq2  -------------------------  665

seq1: chr9_89648778_89649831
seq2: B6Ng01-040C01.g_69_1111

seq1  GAATTCCTTAGTGGCTATATCACTTTGCACTCCAACAGAGAATATGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGTGGCTATATCACTTTGCACTCCAACAGAGAATATGTGTT  50

seq1  GCTTTTCCCCGGTGCCACTCCACCATTAATAATCATCTGTGTTAATAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCCCCGGTGCCACTCCACCATTAATAATCATCTGTGTTAATAACC  100

seq1  TTCATTATTCTGCATGAAATAAGATAAAATCTTAAAGTTGTTTTAATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATTCTGCATGAAATAAGATAAAATCTTAAAGTTGTTTTAATTAT  150

seq1  CATTTCCCTGATGGCTAATGGTGTTGGACATTGTAAACATATTTCTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCTGATGGCTAATGGTGTTGGACATTGTAAACATATTTCTCAAT  200

seq1  TATTAGTATTTTATCCTTTGAGAACACTTCATTTAGTTCTATGCCATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTATTTTATCCTTTGAGAACACTTCATTTAGTTCTATGCCATAAT  250

seq1  TTTAATTGGATTGTTCTTTTTTTACTTTGTTATAGAAAAAAAGAGCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGGATTGTTCTTTTTTTACTTTGTTATAGAAAAAAAGAGCTTGT  300

seq1  TAAATAAATAAAGAACATCATACACAAAAATTAACCAGCTCCAAAGACCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAAGAACATCATACACAAAAATTAACCAGCTCCAAAGACCG  350

seq1  TGCAATATAATGAACTTACAAGCAATTACAATTGACACTCCAAAATGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATAATGAACTTACAAGCAATTACAATTGACACTCCAAAATGGGA  400

seq1  TCTGTGAAGCTTGTGCTATATTTATGCATTTATCCACACCAAAACAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAAGCTTGTGCTATATTTATGCATTTATCCACACCAAAACAAAAC  450

seq1  AAAACAAAATCTATGACAGAATTAGAACTAGAAAAACGTATGCCTGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAATCTATGACAGAATTAGAACTAGAAAAACGTATGCCTGCATT  500

seq1  CAGTTCTTCTGTAGTGCCTCATATTTAGCTTTCCTTGTTCCCTTTTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTCTGTAGTGCCTCATATTTAGCTTTCCTTGTTCCCTTTTGTTC  550

seq1  GCTGTATACTGTACCCAAAAAAGTACAGTATATATAAGTACAGTATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATACTGTACCCAAAAAAGTACAGTATATATAAGTACAGTATATAT  600

seq1  ATATAATCTAGCCATATATATATATGGCTAGATTCCACACACAAGTGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATCTAGCCATATATATATATGGCTAGATTCCACACACAAGTGAGA  650

seq1  ACGTGTGCCTTGTTCTTTCTGAGATGGTGTGACTTCTCTTAATATACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTGCCTTGTTCTTTCTGAGATGGTGTGACTTCTCTTAATATACATC  700

seq1  TGAGCTCCCCTA-TTTCTCTGTAAAATTTTAACTTCACTTACCTTTAGAA  749
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCCCCTATTTTCTCTGTAAAATTTTAACTTCACTTACCTTTAGAA  750

seq1  CTGAGTAATATGTGTGTGTGTGCACGCGCGTGCGTGTGTGTGTGTGTGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAATATGTGTGTGTGTGCACGCGCGTGCGTGTGTGTGTGTGTGTG  800

seq1  TGTGTGCGCGCGCGCACGCGCATGTGATTTTAATTATTCATTTATCTATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCGCGCGCGCACGCGCATGTGATTTTAATTATTCATTTATCTATT  850

seq1  GATGGACAACTAGGTTGATTCCAATTCCTTTCTATAGTGAATAAACAATA  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GATGGACAACTAGGTTGATTCCAATTCCTTTCTATAGTGAAT-AACAATA  899

seq1  CAGCAATAACATCGGGTACAACTACCTCTATAATAAGATGTAAAATACCA  949
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  CAGCAATAACATCGGGTACAACTACCTCTATAAT-AGATGTAAAATACC-  947

seq1  GAGTCATATGATAGTTCTATTTTTAATTTTTGAGAAATCTCTAAACTTAT  999
      |||||||||||||| ||||||||| ||||||||| ||||||| |||||| 
seq2  GAGTCATATGATAG-TCTATTTTT-ATTTTTGAG-AATCTCT-AACTTA-  992

seq1  TTTTACAATGGCTATATTAACTTGCATCCCCATAAACATTCTCTCTCTTT  1049
      |||||||| ||||||||| |||||||| |||||| |||||| ||||||||
seq2  TTTTACAA-GGCTATATT-ACTTGCAT-CCCATAGACATTC-CTCTCTTT  1038

seq1  CTCTC  1054
      |||||
seq2  CTCTC  1043