BAC Information

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BAC

Clone NameB6Ng01-040C11
Chromosome2 (Build37)
Map Location 108,319,912 - 108,321,036
singlet/doubletsinglet
Overlap geneLOC100043078
Upstream genenone
Downstream geneLOC668790, LOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040C11.bB6Ng01-040C11.g
ACCDH867208DH867209
length7321,112
definitionDH867208|Mus musculus domesticus DNA, BAC clone: B6Ng01-040C11, 5' end.DH867209|Mus musculus domesticus DNA, BAC clone: B6Ng01-040C11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtacctaatttttttttaaaacagggttatt
tgatttttctggagcccatcttcttgcgttctttgattatattggatatt
agtcccctatcagatttaggatttgtaaagatcctttcccactctgttgg
tggcctttgtgtcttattgacagtgtcttttgccttacagaagctttgca
attttatgaggtcccatttgttgattctcaatcttacagcacaagtcatt
gctgttctgttcacgaatttttcccctgtgcctatattgtaaaggttttc
ccccactttctcacaatttttttttatcacaattgtactgtagtatatct
atagatcaggaatggtgattacacaagagtttattttattattgctatct
cttgacaggctatgtcagtgcctggaaaatacagaagtggatgctcacag
ttatctcttggatggaacacagggacgccaatgaaggaactagagaaagt
acccaaggagataaaggggtctgcaaccctataggaggaacaacaatatg
aactaaccagtaacccccagagtttgtgtctctagttgcatatgtagcag
aggatggcctagttggccatcaatgggaggagaggcccttggtctttgga
agatcatataccccagtatagggcaatgccagggccaggaagtgggagtg
gctgagttggggagcagggtgggggggaggat

gaattcacttttgggagaattacaaattaaaagagtcagtgtattctaat
ccaaacactctgagatggcagaaaacgatggtttctgaattcaactgtgc
ttcaaaaccacctaaaatgattgtaaaaacataaaattatcccaatcaca
tattattcaatagacccaggtgttactgaccagctgattggtgtcatttt
gctttaccttgatcatgggtacctgaggctatggcctcccaacattggca
attccatgcctctgaacatgatgtctcactgatacactagcagacagaat
gcttctgagacataagaagtgcctataactcctggtttcgagccagagag
taggattgtgggcattaattaggaggcaggtttctatagactttaactac
cagtagccctggcacctgacaggttaagatatgcattcgtcttttatttt
atggtacctagctgagaaaatcttaatttgggaaagacatcctaattcat
atagttacttagagttccttcaatttcattgattttctttgctgttgcca
gccaagtcattgaatttatttacattttagtacttggttggtctttgttt
ttcatatttgcaacagagtctcaaattgcccatgctgttccggatcttac
tctatactgagaatgatctagatcactgatctccctgtcttctaaacaat
ggtagtctggattggaatgacctcctgagacttctgctttaaatgcttgg
cccatagtgagtgagactactaggtcatgtggccttgttggagtaggtat
ggctttgttagaggaagtatatcacttgtatgtgggctttgaggtctcag
aagctgtagtcaagtctagtggcccagtcactttatgtagcctactaatc
tggatatagaactctagttccttctccagcactatgtctacttcatacac
catgcttctgccatgataatggacttaacctctgaactgtaagccagcct
cagtaaatgttttctttttaatgttgctgtgatctggtaactctttcaag
caatagaaaccccaacagctaagaactggactttaagaatacctttaatg
actagggtgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_108319912_108321036
seq2: B6Ng01-040C11.g_69_1180 (reverse)

seq1  TTACAAACCTAGTCATTTGAAGGTTATCTTAAAGTCCCAGTTTTCTTAGC  50
      |||| | |||||||| || |||||  ||||||||| ||||  ||||||||
seq2  TTAC-ACCCTAGTCA-TTAAAGGTATTCTTAAAGT-CCAG--TTCTTAGC  45

seq1  TGTTTGGGGGTTTCTATTGCTATGAAGAGTTACCATGATCACAGCAACAC  100
      ||||  |||||||||||||||   ||||||||||| ||||||||||||| 
seq2  TGTT--GGGGTTTCTATTGCTTGAAAGAGTTACCA-GATCACAGCAACA-  91

seq1  TTATAAAAGAAAACATTTACTGAGGCTGGCTTACAGTTTCAGAGGTTAAG  150
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTA-AAAAGAAAACATTTACTGAGGCTGGCTTACAG-TTCAGAGGTTAAG  139

seq1  TCCATTATCATGGCAGGAAGCATGGTGGTATGAAGTAGACATAGTGCTGG  200
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  TCCATTATCATGGCA-GAAGCATGGT-GTATGAAGTAGACATAGTGCTGG  187

seq1  AGAAGGAACTAGAGTTCTATATCCAGATTAGTAGGCTACATAAAGTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAACTAGAGTTCTATATCCAGATTAGTAGGCTACATAAAGTGACT  237

seq1  GGGCCACTAGACTTGACTACAGCTTCTGAGACCTCAAAGCCCACATACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACTAGACTTGACTACAGCTTCTGAGACCTCAAAGCCCACATACAA  287

seq1  GTGATATACTTCCTCTAACAAAGCCATACCTACTCCAACAAGGCCACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATACTTCCTCTAACAAAGCCATACCTACTCCAACAAGGCCACATG  337

seq1  ACCTAGTAGTCTCACTCACTATGGGCCAAGCATTTAAAGCAGAAGTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTAGTCTCACTCACTATGGGCCAAGCATTTAAAGCAGAAGTCTCA  387

seq1  GGAGGTCATTCCAATCCAGACTACCATTGTTTAGAAGACAGGGAGATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCATTCCAATCCAGACTACCATTGTTTAGAAGACAGGGAGATCAG  437

seq1  TGATCTAGATCATTCTCAGTATAGAGTAAGATCCGGAACAGCATGGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAGATCATTCTCAGTATAGAGTAAGATCCGGAACAGCATGGGCAA  487

seq1  TTTGAGACTCTGTTGCAAATATGAAAAACAAAGACCAACCAAGTACTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACTCTGTTGCAAATATGAAAAACAAAGACCAACCAAGTACTAAA  537

seq1  ATGTAAATAAATTCAATGACTTGGCTGGCAACAGCAAAGAAAATCAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATAAATTCAATGACTTGGCTGGCAACAGCAAAGAAAATCAATGA  587

seq1  AATTGAAGGAACTCTAAGTAACTATATGAATTAGGATGTCTTTCCCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGGAACTCTAAGTAACTATATGAATTAGGATGTCTTTCCCAAAT  637

seq1  TAAGATTTTCTCAGCTAGGTACCATAAAATAAAAGACGAATGCATATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTTCTCAGCTAGGTACCATAAAATAAAAGACGAATGCATATCTT  687

seq1  AACCTGTCAGGTGCCAGGGCTACTGGTAGTTAAAGTCTATAGAAACCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTCAGGTGCCAGGGCTACTGGTAGTTAAAGTCTATAGAAACCTGC  737

seq1  CTCCTAATTAATGCCCACAATCCTACTCTCTGGCTCGAAACCAGGAGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAATTAATGCCCACAATCCTACTCTCTGGCTCGAAACCAGGAGTTA  787

seq1  TAGGCACTTCTTATGTCTCAGAAGCATTCTGTCTGCTAGTGTATCAGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACTTCTTATGTCTCAGAAGCATTCTGTCTGCTAGTGTATCAGTGA  837

seq1  GACATCATGTTCAGAGGCATGGAATTGCCAATGTTGGGAGGCCATAGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCATGTTCAGAGGCATGGAATTGCCAATGTTGGGAGGCCATAGCCT  887

seq1  CAGGTACCCATGATCAAGGTAAAGCAAAATGACACCAATCAGCTGGTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACCCATGATCAAGGTAAAGCAAAATGACACCAATCAGCTGGTCAG  937

seq1  TAACACCTGGGTCTATTGAATAATATGTGATTGGGATAATTTTATGTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCTGGGTCTATTGAATAATATGTGATTGGGATAATTTTATGTTTT  987

seq1  TACAATCATTTTAGGTGGTTTTGAAGCACAGTTGAATTCAGAAACCATCG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCATTTTAGGTGGTTTTGAAGCACAGTTGAATTCAGAAACCATCG  1037

seq1  TTTTCTGCCATCTCAGAGTGTTTGGATTAGAATACACTGACTCTTTTAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCCATCTCAGAGTGTTTGGATTAGAATACACTGACTCTTTTAAT  1087

seq1  TTGTAATTCTCCCAAAAGTGAATTC  1125
      |||||||||||||||||||||||||
seq2  TTGTAATTCTCCCAAAAGTGAATTC  1112


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