BAC Information

Click to search

BAC

Clone NameB6Ng01-040E02
Chromosome5 (Build37)2 (Build37)
Map Location 40,288,634 - 40,289,751142,776,210 - 142,776,756
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC384174, Hs3st1, EG665839
Downstream geneLOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040E02.bB6Ng01-040E02.g
ACCDH867280DH867281
length1,1191,028
definitionDH867280|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E02, 5' end.DH867281|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,288,634 - 40,289,751)(142,776,210 - 142,776,756)
sequence
gaattctttcactgcctaatgaaatgtctcaccctgtttctttactatgt
gagatatgaatgatttttggtatgccgagtattgtatattttacctatcc
attagtctcttggtagccatctaagttatgtgttcctctaaggtttgcaa
tgcctttgttcacagaatgtgtatttattaaataactattctaccagaag
catagttgtggcagtaattaatatgtatccaaagaagtgaaagcacactt
gttttttgtcagaggtgaatatttgatagcttattatgttgtgactatgc
aacaaaaaccatgcacacgcaccttatctagtttgttacctctcgaaggt
ctctggaatccattggcctgttgtcatgcaaccccaactctccatggata
aagatgtgattcaatagttgtgctaaaaaaggtgagcgaagttctcagaa
gcatagccacaccttggaacaattccttccagaaaaaagtgacaggttgt
aagaggctgatgtcaaattttctttacagaaccttttagaagtgcacacc
tggctattgatcaatgcctatatagatttaataaataagagttttcaaca
aaatttcagtggaacttgtatctgcagaataaggaatagtagttttattt
tacaagcagacacacaaatgtgtggcacatgacccacctaagatgtccaa
aggcttctgagcataccaaggatccaattctctctaatccaccatataga
gttcgactctcattctggggtagatctcgttagcatagttggacagtact
ggtttgagactctgaattcttctcccaattcccatttgaattaaacatct
gctctcaatgatataacaaacatgcatttaaaaacattccttaatttatt
cctgctcatattccttattactgtcttcaaagataacctgtaactacaat
aatagcaccagcatacttaataattctgcagcaaatacatggtgcaacaa
taactcacaatgtttatgtcatgatctttatacttgtaaagctctttatt
gtctaaatgggcaccaccttgtgacctattctcatttagtcttatccagc
tggctataaaaatgttcat
gaattctttgtttatctctgagtcccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctaatttaggataggtaaagatcctttcccaatctgttggtggact
ttttgtcttattgaaggtgtcttttgccttgcagaagctttgcagtttca
ggaggtcccatttgtccattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcgaggcttttctccac
tttctcctctataagtttcagtatctctggttttatgtggagttccttga
tccacttagatttgaccttagtacaaggagataggaattaatcaattcac
attcttctacatgataaccaccagttgtgccaacaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtctaaaatcaagt
gaccataagtgtgtgggttcatttctgcgtcttcaattctattcccttgg
tctacttgtctgtcgctataccagtaccatgcagtttttattacaattgc
tctgtagtacagctttaggtcaggcatggtgattccacaaaaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcagattgctctttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatactgccaatccataatcatgggagatctttccatctt
ctgagatctttctttaatttctttcttcagagacgtgaagttcttacata
cagatcttttcacttccttaagtcacaccaccgatattttttactatttg
tgactattgaagaaggggcgttgtttcctgaatttctttctcagcctgtt
tattctttgtgtaagaaaaggccatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_40288634_40289751
seq2: B6Ng01-040E02.b_45_1163

seq1  GAATTCTTTCACTGCCTAATGAAATGTCTCACCCTGTTTCTTTACTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCACTGCCTAATGAAATGTCTCACCCTGTTTCTTTACTATGT  50

seq1  GAGATATGAATGATTTTTGGTATGCCGAGTATTGTATATTTTACCTATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATGAATGATTTTTGGTATGCCGAGTATTGTATATTTTACCTATCC  100

seq1  ATTAGTCTCTTGGTAGCCATCTAAGTTATGTGTTCCTCTAAGGTTTGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCTCTTGGTAGCCATCTAAGTTATGTGTTCCTCTAAGGTTTGCAA  150

seq1  TGCCTTTGTTCACAGAATGTGTATTTATTAAATAACTATTCTACCAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGTTCACAGAATGTGTATTTATTAAATAACTATTCTACCAGAAG  200

seq1  CATAGTTGTGGCAGTAATTAATATGTATCCAAAGAAGTGAAAGCACACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTGTGGCAGTAATTAATATGTATCCAAAGAAGTGAAAGCACACTT  250

seq1  GTTTTTTGTCAGAGGTGAATATTTGATAGCTTATTATGTTGTGACTATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTCAGAGGTGAATATTTGATAGCTTATTATGTTGTGACTATGC  300

seq1  AACAAAAACCATGCACACGCACCTTATCTAGTTTGTTACCTCTCGAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACCATGCACACGCACCTTATCTAGTTTGTTACCTCTCGAAGGT  350

seq1  CTCTGGAATCCATTGGCCTGTTGTCATGCAACCCCAACTCTCCATGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAATCCATTGGCCTGTTGTCATGCAACCCCAACTCTCCATGGATA  400

seq1  AAGATGTGATTCAATAGTTGTGCTAAAAAAGGTGAGCGAAGTTCTCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTGATTCAATAGTTGTGCTAAAAAAGGTGAGCGAAGTTCTCAGAA  450

seq1  GCATAGCCACACCTTGGAACAATTCCTTCCAGAAAAAAGTGACAGGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCCACACCTTGGAACAATTCCTTCCAGAAAAAAGTGACAGGTTGT  500

seq1  AAGAGGCTGATGTCAAATTTTCTTTACAGAACCTTTTAGAAGTGCACACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCTGATGTCAAATTTTCTTTACAGAACCTTTTAGAAGTGCACACC  550

seq1  TGGCTATTGATCAATGCCTATATAGATTTAATAAATAAGAGTTTTCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATTGATCAATGCCTATATAGATTTAATAAATAAGAGTTTTCAACA  600

seq1  AAATTTCAGTGGAACTTGTATCTGCAGAATAAGGAATAGTAGTTTTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCAGTGGAACTTGTATCTGCAGAATAAGGAATAGTAGTTTTATTT  650

seq1  TACAAGCAGACACACAAATGTGTGGCACATGACCCACCTAAGATGTCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCAGACACACAAATGTGTGGCACATGACCCACCTAAGATGTCCAA  700

seq1  AGGCTTCTGAGCATACCAAGGATCCAATTCTCTCTAATCCACCATATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTGAGCATACCAAGGATCCAATTCTCTCTAATCCACCATATAGA  750

seq1  GTTCGACTCTCATTCTGGGGTAGATCTCGTTAGCATAG-TGGACAGTACT  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTTCGACTCTCATTCTGGGGTAGATCTCGTTAGCATAGTTGGACAGTACT  800

seq1  GGTTTGAGACTCTGAATTCTTCTCCCAATTCCCATTTGAATTAAACATCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAGACTCTGAATTCTTCTCCCAATTCCCATTTGAATTAAACATCT  850

seq1  GCTCTCAATGATATAACAAACATGCATTTAAAAACATTCCTTAATTTATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAATGATATAACAAACATGCATTTAAAAACATTCCTTAATTTATT  900

seq1  CCTGCTCATATTCCTTATTACTGTCTTCAAAGATAACCTGTAACTACAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCATATTCCTTATTACTGTCTTCAAAGATAACCTGTAACTACAAT  950

seq1  AATAGCACCAGCAATAC-TAATAATTCTGCAGCAAATACATGGTGCAACA  998
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  AATAGCACCAGC-ATACTTAATAATTCTGCAGCAAATACATGGTGCAACA  999

seq1  ATAACTCACAATTGTTTATGGTCATGATC-TTATACTGTAAAAGCCCTTT  1047
      ||||||||||| ||||||| ||||||||| |||||||   ||||| ||||
seq2  ATAACTCACAA-TGTTTAT-GTCATGATCTTTATACTTGTAAAGCTCTTT  1047

seq1  ATTGTCTATAT-GGCACCACTTGTTGAACTA-TCTCATTTAGTTCTTATA  1095
      |||||||| || |||||||| |  ||| ||| |||||||||| |||||| 
seq2  ATTGTCTAAATGGGCACCACCTTGTGACCTATTCTCATTTAG-TCTTAT-  1095

seq1  CGAGCTGCATA-AAAAATGTTCAT  1118
      | |||||  || ||||||||||||
seq2  CCAGCTGGCTATAAAAATGTTCAT  1119

seq1: chr2_142776210_142776756
seq2: B6Ng01-040E02.g_552_1097 (reverse)

seq1  TCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAG  50
      || |||||||||   || ||||||||||||||||||||||||||||||  
seq2  TCCATGGCCTTTTCTTACACAAAGAATAAACAGGCTGAGAAAGAAATTCA  50

seq1  GGAAACAAC-ACCCTTC-TCAATAGTCACAAATAATATAAAATATC-TCG  97
      |||||||||  |||||| |||||||||||||||| || ||||||||   |
seq2  GGAAACAACGCCCCTTCTTCAATAGTCACAAATAGTAAAAAATATCGGTG  100

seq1  GCGTGACTCTAACTAAGGAAGTG-AAAGATCTGTATGATAAAAACTTCAA  146
      | ||||||     |||||||||| ||||||||||||| ||| ||||||| 
seq2  GTGTGACT-----TAAGGAAGTGAAAAGATCTGTATG-TAAGAACTTCAC  144

seq1  GTCTCTGAAGAAAGAAATTAAAG-AAGATCTCAGAAGATGGAAGGATCTC  195
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  GTCTCTGAAGAAAGAAATTAAAGAAAGATCTCAGAAGATGGAAAGATCTC  194

seq1  CCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCC  245
      ||||| | |||||||||||| |||||||||||||||||||||||||||||
seq2  CCATGATTATGGATTGGCAGTATCAACATTGTAAAAATGGCTATCTTGCC  244

seq1  AAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAAT  294

seq1  TCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAA  345
      ||||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  TCTTCAACGAATTAGAAAGAGCAATCTGCAAATTCATCTGGAATAACAAA  344

seq1  AAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACCTCTGGTGG  395
      ||||||||||||||||||| ||||||||||||||||||||||| | ||||
seq2  AAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTTTTGTGG  394

seq1  AATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAA  445
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  AATCACCATGCCTGACCTAAAGCTGTACTACAGAGCAATTGTAATAAAAA  444

seq1  CTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATT  495
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  CTGCATGGTACTGGTATAGCGACAGACAAGTAGACCAAGGGAATAGAATT  494

seq1  GAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAA  545
      |||||| ||||||||||||||||||| |||||||||||||| || |||||
seq2  GAAGACGCAGAAATGAACCCACACACTTATGGTCACTTGATTTTAGACAA  544

seq1  GG  547
      ||
seq2  GG  546