BAC Information

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BAC

Clone NameB6Ng01-040E09
Chromosome2 (Build37)15 (Build37)
Map Location 180,912,155 - 180,913,02225,629,763 - 25,630,106
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2
Downstream gene2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040E09.bB6Ng01-040E09.g
ACCDH867293DH867294
length869116
definitionDH867293|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E09, 5' end.DH867294|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(180,912,155 - 180,913,022)(25,629,763 - 25,630,106)
sequence
gaattcactttgtagaccaggctgtccttgaactcagaagtctgcctgcc
tctgcctcccgagtgctgggattaaaggtgtgcgccaccactgcccggct
agcattgacttttttttttttttttttaatatatgtgagtacactgttgc
tgttttcagacacacaccagaagagggcatcagatctcattatagatgaa
tgtgagccaccacgtgtttgctgggaattgaacacaggactctggaagag
cagccagtgctcttcttaactgctgagccatctctccagccccagcacaa
tgacctttgtgtattgactttgtgtcttgcaatcttgctgccctcaacac
ctgattttctttttcatagattccttgagaccctctacaaaggcaattac
cattacctgttaatagagataatttcagatctccatttacgatctgcatg
cctcttgtttctttgttttatttttctggctgagaaaataaatttctgca
tggctcttgtttcttgtgggtatggaaagactgtagtgagagtgaagagt
cctatactgcaaccagtgcatgtcttgctgccaaaactttatctatactc
ctagattgaagatgttcctttctggtactgtgtttgtggacggccctggt
gctattgaatttttgatgttaattctgccttttccaggaggggttgtctg
gacagaggaatgagtcaagtacttgggtaacttcttgtgaaaccttcccc
caaatgaattaagaggccaaacactgggtgagtaggcaggacttccgggt
tgaacagatgaagagagggaacaggagagaatagggtttttttttttttt
tggatgaggaagaagagag
cagcccggcggtggtggtgcacgcctttaatcccagcacttgggaggcag
aggcaggtggatttcttttttgtttgtttggtttttgggttttttttttt
ttttttgagacagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_180912155_180913022
seq2: B6Ng01-040E09.b_42_910

seq1  GAATTCACTTTGTAGACCAGGCTGTCCTTGAACTCAGAAGTCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGTCCTTGAACTCAGAAGTCTGCCTGCC  50

seq1  TCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGCGCCACCACTGCCCGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGCGCCACCACTGCCCGGCT  100

seq1  AGCATTGACTTTTTTTTTTTTTTTTTTAATATATGTGAGTACACTGTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGACTTTTTTTTTTTTTTTTTTAATATATGTGAGTACACTGTTGC  150

seq1  TGTTTTCAGACACACACCAGAAGAGGGCATCAGATCTCATTATAGATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGACACACACCAGAAGAGGGCATCAGATCTCATTATAGATGAA  200

seq1  TGTGAGCCACCACGTGTTTGCTGGGAATTGAACACAGGACTCTGGAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCACCACGTGTTTGCTGGGAATTGAACACAGGACTCTGGAAGAG  250

seq1  CAGCCAGTGCTCTTCTTAACTGCTGAGCCATCTCTCCAGCCCCAGCACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTGCTCTTCTTAACTGCTGAGCCATCTCTCCAGCCCCAGCACAA  300

seq1  TGACCTTTGTGTATTGACTTTGTGTCTTGCAATCTTGCTGCCCTCAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTGTGTATTGACTTTGTGTCTTGCAATCTTGCTGCCCTCAACAC  350

seq1  CTGATTTTCTTTTTCATAGATTCCTTGAGACCCTCTACAAAGGCAATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTCTTTTTCATAGATTCCTTGAGACCCTCTACAAAGGCAATTAC  400

seq1  CATTACCTGTTAATAGAGATAATTTCAGATCTCCATTTACGATCTGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCTGTTAATAGAGATAATTTCAGATCTCCATTTACGATCTGCATG  450

seq1  CCTCTTGTTTCTTTGTTTTATTTTTCTGGCTGAGAAAATAAATTTCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGTTTCTTTGTTTTATTTTTCTGGCTGAGAAAATAAATTTCTGCA  500

seq1  TGGCTCTTGTTTCTTGTGGGTATGGAAAGACTGTAGTGAGAGTGAAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTGTTTCTTGTGGGTATGGAAAGACTGTAGTGAGAGTGAAGAGT  550

seq1  CCTATACTGCAACCAGTGCATGTCTTGCTGCCAAAACTTTATCTATACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATACTGCAACCAGTGCATGTCTTGCTGCCAAAACTTTATCTATACTC  600

seq1  CTAGATTGAAGATGTTCCTTTCTGGTACTGTGTTTGTGGACGGCCCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTGAAGATGTTCCTTTCTGGTACTGTGTTTGTGGACGGCCCTGGT  650

seq1  GCTATTGAA-TTTTGATGTTAATTCTGCC-TTTCCAGGAGGGGTTGTCTG  698
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  GCTATTGAATTTTTGATGTTAATTCTGCCTTTTCCAGGAGGGGTTGTCTG  700

seq1  GACAGAGGAATGAGTCAAGTACTTGGGTAACTTCTTGTG-AACCTTCCCC  747
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GACAGAGGAATGAGTCAAGTACTTGGGTAACTTCTTGTGAAACCTTCCCC  750

seq1  CAAATGAATTAAGAGGCCAACCACTGGGTGAGTAGGCAGGACTTCCGGGT  797
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAAATGAATTAAGAGGCCAAACACTGGGTGAGTAGGCAGGACTTCCGGGT  800

seq1  TGAACAGAGGAAGAGAGGAAGCAGGAGAGAATTAGGGTTTTTTTTTTTTT  847
      |||||||| ||||||||| | |||||||||||  || |||||||||||||
seq2  TGAACAGATGAAGAGAGGGAACAGGAGAGAATAGGGTTTTTTTTTTTTTT  850

seq1  TGGATGAGGATAGCAAGAGAG  868
      |||||||||| || |||||||
seq2  TGGATGAGGA-AG-AAGAGAG  869

seq1: chr15_25629763_25630106
seq2: B6Ng01-040E09.g_88_190 (reverse)

seq1  ACCCTGTCTCAAAAACACCAAAAAAAAAAAACCCAAAAAACAAAAAACAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAAACTATTAACTATACTCTAGTATGGGTTGAGGATGTAGCTGAGCCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGACCTCAGTTTTGATTGCCTATACTGCAAAAACAAATTCAACCTCTGAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  CATAAATGAAGATGTGGACTCCATAGTAAAGTCACCTTTTTTTTTTTTTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTTTTTGATTTTTGAGATAGGGTTTCTCTGTATAGCCCTGGCT---  247
                                             ||||| ||   
seq2  --------------------------------------ACCCTGTCTCAA  12

seq1  ------GTCCTAGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGA  291
                 | ||| ||      | ||||  |   |    ||   |||
seq2  AAAAAAAAAAAAAAACCCA-----AAAACCAAACAAAC----AAAAAAGA  53

seq1  AATCCGCCTGCCTCTGCCTCCCTAGTGCTGGGATTAAAGGCGTGTGCCAC  341
      ||||| |||||||||||||||| |||||||||||||||||||||   |||
seq2  AATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTG---CAC  100

seq1  CAC  344
      |||
seq2  CAC  103