BAC Information

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BAC

Clone NameB6Ng01-040I06
Chromosome2 (Build37)
Map Location 80,965,100 - 81,114,250
singlet/doubletdoublet
Overlap genenone
Upstream genePde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704, Zfp804a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040I06.bB6Ng01-040I06.g
ACCDH867456DH867457
length1,0901,103
definitionDH867456|Mus musculus domesticus DNA, BAC clone: B6Ng01-040I06, 5' end.DH867457|Mus musculus domesticus DNA, BAC clone: B6Ng01-040I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,113,164 - 81,114,250)(80,965,100 - 80,966,226)
sequence
gaattctattctgacttatcactctccttcaagaacttctgagtcacttc
agtttatttcctagatgtttctccaatacatgaactacctttcagtctcc
acatcactctctacctcctcccttcactacattcatcaaaggtagtgggg
tcatcgatggccctaagttcccatataaatttgcttgctagcatttaaag
gtaaacaacaagaacaacaaaaaggaacaggacaaaatatttagggaaag
gctggttggttttggatcatagtttgagggtgcagtccattatgccagga
aaggcatgcactaagaacttgaggtcatactgggctctgagacaagtgga
ataaaatgaggctggtgcacatctcactatctcctttttatttaacccag
gatgccaacacatagacctacactgcccatagttaaaataaatgctctca
attaacctaatctagacgacgcctcaaaggcatgtccagagacttgtctt
ctaggtgattctagatcctgtcaagttggcagccagaatgcacattcact
tgtcataaggtcaccattgatggagaattttcttcctatcagattcttca
gccttatcagaggtcattttttctcacttacttctttcaatttctcaaac
tagcaaattcctgtctacctctaggctttaaataatgaattgcttaatac
aaacacacacacacacacacacacacacacacacacacacacacacacac
cactcgcttcttttgtctgcttatactggaattgtggtttagatgtcagt
tctaatatcatttttctaataagtccaagttatttcctcctatctcatga
tccaatgagcaatatgtgtttttgtttatttgtcttcactacattttacc
atattcacttatttatttcattgttttagtaaggtttcccatgtaacttt
atgaatgatctatctagcaacttataaccacatacaaatatgactcagaa
taaaaagaaagtcctctttatggctggaaatacctttaatagaaagaaga
attaattttctaggaaataaatttccaagaggattacatt
gaattcatgatcataattatgagtaaagttagacataagccagcacccag
tgatttcgtttatgtgagatttcagaacaggtagactaatctactgtatg
tgaaagaagtctgtgtcttgggaaagtttgctgaaaatctccatgcttta
attggagcagtacttctagtgtatgttcatatattgctatttactgagca
gcatgcctaagattcatgtatatatgttaaaacaatttaaaaactctgtc
tcactaactccttttatacttttaaaagcaattatcttctttaagttcta
aattatgttaacttataagaaataagggccagaaagttaacataatttag
ataattagtgtaaatactgaatacaatattcattcatgtctacctcagta
ttcaacattaggctcacatgttcatttcaaaactttgtgttttcttctgg
ggttattttctgtcaatctggagaaattacttcagtatattttaatatat
gtgctataataatgaattctttgtttttgtctaaagataagttcattgtg
ctttctgtgtattgaagtcttttctggttgtctctagttttttcctccca
aattttaaaagatcttattgtgttgggcattcacagtttctctagaaaag
gcatatgttactttaattgttccttttttttttttttttttttttgtccc
ttactgatgcctttcagcaggtctgccttgattttgagaagctttctggt
aatttatctgactctggatttctttatagtgtctgtcatggggaatgcca
aacttcctgaaattgtgcattgtatcatctatcgtctctgggacatatat
agataataacccttaaatgttggttctttctattttatctctctacacat
gggattataaatcacccataagtatttgacattctggctagaactgacat
atactctatagtacatttctttatctctccaatgtgtaatttcttacgca
gcggataatattcataaattcgtccctatgtgaaatactggagactggcg
acatttaataaggtatagaaaggatcagtacatggagtcctccccgaagt
gac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_81113164_81114250
seq2: B6Ng01-040I06.b_42_1131 (reverse)

seq1  AATGTAAT-CTCTTGGAATATATA-TTCCTAGAAA--TTATTCTTCTATC  46
      |||||||| ||||||||| || || ||||||||||  | |||||||| ||
seq2  AATGTAATCCTCTTGGAA-ATTTATTTCCTAGAAAATTAATTCTTCTTTC  49

seq1  TATT-AACGTATTTCCAG-CATAAAGAGGACTTTCTTTTTATTCTGAGTC  94
      |||| || |||||||||| |||||||||||||||||||||||||||||||
seq2  TATTAAAGGTATTTCCAGCCATAAAGAGGACTTTCTTTTTATTCTGAGTC  99

seq1  ATATTTGTATGT-GTTATAAGTTTGCTAGATAGATCATTCATAAAGTTTA  143
      |||||||||||| |||||||| |||||||||||||||||||||||| |||
seq2  ATATTTGTATGTGGTTATAAG-TTGCTAGATAGATCATTCATAAAG-TTA  147

seq1  CATGGGAAAACATTACTAAAACAATGAAATAAATAAGTGAATATTGGTAA  193
      |||||| |||| ||||||||||||||||||||||||||||||| ||||||
seq2  CATGGG-AAACCTTACTAAAACAATGAAATAAATAAGTGAATA-TGGTAA  195

seq1  AATGTAGTGAAGAC-AATAAAC-AAAACACATATTGCTCATTGGATCATG  241
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  AATGTAGTGAAGACAAATAAACAAAAACACATATTGCTCATTGGATCATG  245

seq1  AGATAGGAGGAAATAACTTGGACTTATTAGAAAAAATGATATTAGAACTG  291
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGATAGGAGGAAATAACTTGGACTTATTAG-AAAAATGATATTAGAACTG  294

seq1  ACATCTAAACCACAATTCCAGTATAAGCAGGCAAAAGAAGCGAGTGGTGT  341
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACATCTAAACCACAATTCCAGTATAAGCAGACAAAAGAAGCGAGTGGTGT  344

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTAT  394

seq1  TAAGCAATTCATTATTTAAAGCCTAGAGGTAGACAGGAATTTGCTAGTTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAATTCATTATTTAAAGCCTAGAGGTAGACAGGAATTTGCTAGTTT  444

seq1  GAGAAATTGAAAGAAGTAAGTGAGAAAAAATGACCTCTGATAAGGCTGAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATTGAAAGAAGTAAGTGAGAAAAAATGACCTCTGATAAGGCTGAA  494

seq1  GAATCTGATAGGAAGAAAATTCTCCATCAATGGTGACCTTATGACAAGTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGATAGGAAGAAAATTCTCCATCAATGGTGACCTTATGACAAGTG  544

seq1  AATGTGCATTCTGGCTGCCAACTTGACAGGATCTAGAATCACCTAGAAGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCATTCTGGCTGCCAACTTGACAGGATCTAGAATCACCTAGAAGA  594

seq1  CAAGTCTCTGGACATGCCTTTGAGGCGTCGTCTAGATTAGGTTAATTGAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTCTGGACATGCCTTTGAGGCGTCGTCTAGATTAGGTTAATTGAG  644

seq1  AGCATTTATTTTAACTATGGGCAGTGTAGGTCTATGTGTTGGCATCCTGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTATTTTAACTATGGGCAGTGTAGGTCTATGTGTTGGCATCCTGG  694

seq1  GTTAAATAAAAAGGAGATAGTGAGATGTGCACCAGCCTCATTTTATTCCA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATAAAAAGGAGATAGTGAGATGTGCACCAGCCTCATTTTATTCCA  744

seq1  CTTGTCTCAGAGCCCAGTATGACCTCAAGTTCTTAGTGCATGCCTTTCCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTCAGAGCCCAGTATGACCTCAAGTTCTTAGTGCATGCCTTTCCT  794

seq1  GGCATAATGGACTGCACCCTCAAACTATGATCCAAAACCAACCAGCCTTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAATGGACTGCACCCTCAAACTATGATCCAAAACCAACCAGCCTTT  844

seq1  CCCTAAATATTTTGTCCTGTTCCTTTTTGTTGTTCTTGTTGTTTACCTTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAATATTTTGTCCTGTTCCTTTTTGTTGTTCTTGTTGTTTACCTTT  894

seq1  AAATGCTAGCAAGCAAATTTATATGGGAACTTAGGGCCATCGATGACCCC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTAGCAAGCAAATTTATATGGGAACTTAGGGCCATCGATGACCCC  944

seq1  ACTACCTTTGATGAATGTAGTGAAGGGAGGAGGTAGAGAGTGATGTGGAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTTTGATGAATGTAGTGAAGGGAGGAGGTAGAGAGTGATGTGGAG  994

seq1  ACTGAAAGGTAGTTCATGTATTGGAGAAACATCTAGGAAATAAACTGAAG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAGGTAGTTCATGTATTGGAGAAACATCTAGGAAATAAACTGAAG  1044

seq1  TGACTCAGAAGTTCTTGAAGGAGAGTGATAAGTCAGAATAGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAGAAGTTCTTGAAGGAGAGTGATAAGTCAGAATAGAATTC  1090

seq1: chr2_80965100_80966226
seq2: B6Ng01-040I06.g_70_1172

seq1  GAATTCATGATCATAATTATGAGTAAAGTTAGACATAAGCCAGCACCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATCATAATTATGAGTAAAGTTAGACATAAGCCAGCACCCAG  50

seq1  TGATTTCGTTTATGTGAGATTTCAGAACAGGTAGACTAATCTACTGTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCGTTTATGTGAGATTTCAGAACAGGTAGACTAATCTACTGTATG  100

seq1  TGAAAGAAGTCTGTGTCTTGGGAAAGTTTGCTGAAAATCTCCATGCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAAGTCTGTGTCTTGGGAAAGTTTGCTGAAAATCTCCATGCTTTA  150

seq1  ATTGGAGCAGTACTTCTAGTGTATGTTCATATATTGCTATTTACTGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGCAGTACTTCTAGTGTATGTTCATATATTGCTATTTACTGAGCA  200

seq1  GCATGCCTAAGATTCATGTATATATGTTAAAACAATTTAAAAACTCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCTAAGATTCATGTATATATGTTAAAACAATTTAAAAACTCTGTC  250

seq1  TCACTAACTCCTTTTATACTTTTAAAAGCAATTATCTTCTTTAAGTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAACTCCTTTTATACTTTTAAAAGCAATTATCTTCTTTAAGTTCTA  300

seq1  AATTATGTTAACTTATAAGAAATAAGGGCCAGAAAGTTAACATAATTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTTAACTTATAAGAAATAAGGGCCAGAAAGTTAACATAATTTAG  350

seq1  ATAATTAGTGTAAATACTGAATACAATATTCATTCATGTCTACCTCAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAGTGTAAATACTGAATACAATATTCATTCATGTCTACCTCAGTA  400

seq1  TTCAACATTAGGCTCACATGTTCATTTCAAAACTTTGTGTTTTCTTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATTAGGCTCACATGTTCATTTCAAAACTTTGTGTTTTCTTCTGG  450

seq1  GGTTATTTTCTGTCAATCTGGAGAAATTACTTCAGTATATTTTAATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTTTCTGTCAATCTGGAGAAATTACTTCAGTATATTTTAATATAT  500

seq1  GTGCTATAATAATGAATTCTTTGTTTTTGTCTAAAGATAAGTTCATTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTATAATAATGAATTCTTTGTTTTTGTCTAAAGATAAGTTCATTGTG  550

seq1  CTTTCTGTGTATTGAAGTCTTTTCTGGTTGTCTCTAGTTTTTTCCTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTGTATTGAAGTCTTTTCTGGTTGTCTCTAGTTTTTTCCTCCCA  600

seq1  AATTTTAAAAGATCTTATTGTGTTGGGCATTCACAGTTTCTCTAGAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAAGATCTTATTGTGTTGGGCATTCACAGTTTCTCTAGAAAAG  650

seq1  GCATATGTTACTTTAATTGTTCCTTTTTTTTTTTTTTTTTTTTTTGTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGTTACTTTAATTGTTCCTTTTTTTTTTTTTTTTTTTTTTGTCCC  700

seq1  TTACTGATGCCTTTCAGCAGGTCTGCCTTGATTTTGAGAAGCTTTCTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGATGCCTTTCAGCAGGTCTGCCTTGATTTTGAGAAGCTTTCTGGT  750

seq1  AATTTATCTGACTCTGGATTTCTTTATAGTGTCTGTCAT-GGGAATGCCA  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATTTATCTGACTCTGGATTTCTTTATAGTGTCTGTCATGGGGAATGCCA  800

seq1  AACTTCCTGAAATTGTGCATTTGTATCATCTATCGTCTCTGGAACATATA  849
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  AACTTCCTGAAATTGTGCA-TTGTATCATCTATCGTCTCTGGGACATATA  849

seq1  TAGATAATAACCCTTAAATGTTGGTTCTTTCTTATTTTATCTCTTCTACA  899
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  TAGATAATAACCCTTAAATGTTGGTTCTTTC-TATTTTATCTC-TCTACA  897

seq1  CATGGGATTATAAATCACCCATAAGTATTTGTACATTCTGGCTAGAACTG  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATGGGATTATAAATCACCCATAAGTATTTG-ACATTCTGGCTAGAACTG  946

seq1  ACATATACTCTATATGTTACATTTTCTTTATCTCTCCATATGCTGTTATT  999
      ||||||||||||||   |||| |||||||||||||||| ||| ||| |||
seq2  ACATATACTCTATA--GTACA-TTTCTTTATCTCTCCA-ATG-TGTAATT  991

seq1  TTCCTTTACCCCAGCGAATTATATATCATAAATCCGGTCACTAGTGTGAT  1049
      |  |||   | ||||| || |||| |||||||| | ||| ||| ||||| 
seq2  T--CTT--ACGCAGCGGATAATAT-TCATAAATTC-GTCCCTA-TGTGA-  1033

seq1  AATACT-GAGACCTGGCAGACCATTAATAGGTGTAATAGAAAGATATCAG  1098
      |||||| |||| ||||| |||  |||||| | || ||||||||  |||||
seq2  AATACTGGAGA-CTGGC-GACATTTAATAAG-GT-ATAGAAAG-GATCAG  1078

seq1  TTCAGTGGAGTCTCCTCCTCAGAAGTGAC  1127
      | || |||||  |||||| | ||||||||
seq2  TACA-TGGAG--TCCTCC-CCGAAGTGAC  1103