BAC Information

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BAC

Clone NameB6Ng01-040I10
Chromosome2 (Build37)
Map Location 143,554,779 - 143,555,344
singlet/doubletsinglet
Overlap genePcsk2
Upstream geneKif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040I10.bB6Ng01-040I10.g
ACCDH867462DH867463
length1,181825
definitionDH867462|Mus musculus domesticus DNA, BAC clone: B6Ng01-040I10, 5' end.DH867463|Mus musculus domesticus DNA, BAC clone: B6Ng01-040I10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgaagatgtagctgtctcttgtgagactatgccggggcccagccaaa
cacagaagtggatgctcacagtcagctaatggatggatcataagctccca
atggaggagctagagaaagtagccaagagctaagggatctgcacccttat
agtgtaccaacatatgagctaaccagtacctcgagcttctgacttcagct
gctatatatcaaaagatggcctatgtccgccatcactgtaagagaagccc
attggaacttgcaacatttatggccccagtacagggaatacacagcaaaa
aggggtagaggatgctgagagaaaatgtgat
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgatttttgttaa
ttaggatttcgtccctgtgccctttagtgagtctagctaagggttttatc
tatcttgttgattttctcaaagaaccaactcctcgttttggttaattctt
tgaatagttcttcttgtttccactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143554779_143555344
seq2: B6Ng01-040I10.g_326_894 (reverse)

seq1  AAGTGGAAACAAGAAGAACTATTCAAAGAATTAACC-AAACGAGGAGTTG  49
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAAACGAGGAGTTG  50

seq1  GTTCTTTGAGAAAATCAACAAGATAGAT-AAACCCTTAGCTAGACTCACT  98
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTTCTTTGAGAAAATCAACAAGATAGATAAAACCCTTAGCTAGACTCACT  100

seq1  AAAGGGCACAGGGACAAAATCCTAATTAAC-AAAATCAGAAATGAAAAGG  147
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  AAAGGGCACAGGGACGAAATCCTAATTAACAAAAATCAGAAATGAAAAGG  150

seq1  GAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTC  200

seq1  TACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAA  250

seq1  ATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACC  300

seq1  TTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGT  350

seq1  CTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTA  400

seq1  TCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACA  450

seq1  AGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATT  500

seq1  ACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAG  550

seq1  ACCAATTTCTCTTATGAAC  566
      |||||||||||||||||||
seq2  ACCAATTTCTCTTATGAAC  569