BAC Information

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BAC

Clone NameB6Ng01-041A20
Chromosome2 (Build37)
Map Location 77,728,021 - 77,872,349
singlet/doubletdoublet
Overlap geneBC003993, LOC667920
Upstream geneTtn, 2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533
Downstream geneOTTMUSG00000016703, LOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041A20.bB6Ng01-041A20.g
ACCDH867827DH867828
length1,055429
definitionDH867827|Mus musculus domesticus DNA, BAC clone: B6Ng01-041A20, 5' end.DH867828|Mus musculus domesticus DNA, BAC clone: B6Ng01-041A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,728,021 - 77,729,074)(77,871,915 - 77,872,349)
sequence
gaattcaccttacactggggctctccgtgccggtggtccaaatccaaaga
caagaagtatatgcagaagcagaactcactggctcccgaaaccggggaag
cctgaaaaccattcaactcagaccccaaccatgtagggacctccttccag
tatccctgcttccctctgagctacactgacttcccacagcaaactaattt
tctcacagggcttggaccatgatcttccactgagcccccaccctgcctta
agtacccttaaacaggaccctgtatgtgtttcaggctctacactgataca
ctattgtgatggatggccgaggttagaccacgtgccactgtagaactatt
tgagggcacagggcacatgggtactatgtttttaagtcagtgcattcttc
aggatcctttggtcagggcagttgccagattcactagaatcatttgcgca
gtgagagaaatggctattgctcagcactgccctcacagagattcccatgt
gttgagtgacattttctagggggacttaacagtttgttcatcccagatag
ggaatccatgccagactattgtatagcacttttctctagcactagtcaat
atccagaaagttctatagagggctcattaaaacccaggaagttctaaaga
gatgttgaagtactttgagagtcaagaattaatacaactcagaaggcttg
ggaagtccctgaaactgaggacttgcacaagacaatcccctaaagatcag
ataaacagaaagaaaaaaaaaaaaactgctggggagagaaaggaccagct
gaactgcctggaaggggagaagtgatagctgagttgcttgggagattctc
tgacttgtcaagctatacaccacctatgcagtgagttctaggggtctaat
cttgtcagctgtcacccattctggagtagctttcagccatttttggatca
ttcctgctcccgaacacaccctactaaattgactgttcactaagttgcac
tttggttgtttcctctttttggtctattgtaacattcagtcttctagaag
tgagt
aaaatatatttaaattaagtagtaattacttttgagacagtatctttcta
tgtgccccaggctggcctcaaactcatggtgctagcctgcctttgcgtcc
ctaaggctggtatcacagtgccttacagaaataattttgtaaggtgaaat
atgcattaaaataagaaaaaattatattatggcagtgcaaccaccaagaa
tgaatgagaccccattttcacctataacaaaaaaaaatcaaatctccaat
gtcattttttatttatttattttttaaatttcagggacttctctttatta
gttctttaagaattttgtagaacatattttgatcatcttcaccccttact
ccaaaatcaaccatccttactaacaccaaactttgtacttggtttcttct
tccgactctcctcctcctcctcctcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_77728021_77729074
seq2: B6Ng01-041A20.b_30_1084

seq1  GAATTCACCTTACACTGGGGCTCTCCGTGCCGGTGGTCCAAATCCAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTACACTGGGGCTCTCCGTGCCGGTGGTCCAAATCCAAAGA  50

seq1  CAAGAAGTATATGCAGAAGCAGAACTCACTGGCTCCCGAAACCGGGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGTATATGCAGAAGCAGAACTCACTGGCTCCCGAAACCGGGGAAG  100

seq1  CCTGAAAACCATTCAACTCAGACCCCAACCATGTAGGGACCTCCTTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAACCATTCAACTCAGACCCCAACCATGTAGGGACCTCCTTCCAG  150

seq1  TATCCCTGCTTCCCTCTGAGCTACACTGACTTCCCACAGCAAACTAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTGCTTCCCTCTGAGCTACACTGACTTCCCACAGCAAACTAATTT  200

seq1  TCTCACAGGGCTTGGACCATGATCTTCCACTGAGCCCCCACCCTGCCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGGGCTTGGACCATGATCTTCCACTGAGCCCCCACCCTGCCTTA  250

seq1  AGTACCCTTAAACAGGACCCTGTATGTGTTTCAGGCTCTACACTGATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCTTAAACAGGACCCTGTATGTGTTTCAGGCTCTACACTGATACA  300

seq1  CTATTGTGATGGATGGCCGAGGTTAGACCACGTGCCACTGTAGAACTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTGATGGATGGCCGAGGTTAGACCACGTGCCACTGTAGAACTATT  350

seq1  TGAGGGCACAGGGCACATGGGTACTATGTTTTTAAGTCAGTGCATTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCACAGGGCACATGGGTACTATGTTTTTAAGTCAGTGCATTCTTC  400

seq1  AGGATCCTTTGGTCAGGGCAGTTGCCAGATTCACTAGAATCATTTGCGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCTTTGGTCAGGGCAGTTGCCAGATTCACTAGAATCATTTGCGCA  450

seq1  GTGAGAGAAATGGCTATTGCTCAGCACTGCCCTCACAGAGATTCCCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAAATGGCTATTGCTCAGCACTGCCCTCACAGAGATTCCCATGT  500

seq1  GTTGAGTGACATTTTCTAGGGGGACTTAACAGTTTGTTCATCCCAGATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTGACATTTTCTAGGGGGACTTAACAGTTTGTTCATCCCAGATAG  550

seq1  GGAATCCATGCCAGACTATTGTATAGCACTTTTCTCTAGCACTAGTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCATGCCAGACTATTGTATAGCACTTTTCTCTAGCACTAGTCAAT  600

seq1  ATCCAGAAAGTTCTATAGAGGGCTCATTAAAACCCAGGAAGTTCTAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAAAGTTCTATAGAGGGCTCATTAAAACCCAGGAAGTTCTAAAGA  650

seq1  GATGTTGAAGTACTTTGAGAGTCAAGAATTAATACAACTCAGAAGGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGAAGTACTTTGAGAGTCAAGAATTAATACAACTCAGAAGGCTTG  700

seq1  GGAAGTCCCTGAAACTGAGGACTTGCACAAGACAATCCCCTAAAGATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCCCTGAAACTGAGGACTTGCACAAGACAATCCCCTAAAGATCAG  750

seq1  ATAAACAGAAAGAAAAAAAAAAAAACTGCTGGGGAGAGAAAGGACCAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAGAAAGAAAAAAAAAAAAACTGCTGGGGAGAGAAAGGACCAGCT  800

seq1  GAACTGCCTGGAAGGGGAGAAGTGATAGCTGAGTTGCTTGGGAGATTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCCTGGAAGGGGAGAAGTGATAGCTGAGTTGCTTGGGAGATTCTC  850

seq1  TGACTTGTCAAGCTATACACCACCTATGCAGTGAGTTCTAGGGGTCTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGTCAAGCTATACACCACCTATGCAGTGAGTTCTAGGGGTCTAAT  900

seq1  CTTGTCAGCTGTCACCCATTCTGGAGTAGCTTTCAGCCATTTTTGGATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAGCTGTCACCCATTCTGGAGTAGCTTTCAGCCATTTTTGGATCA  950

seq1  TTCCTGCTCCCGAACACAACCCTACTAAATTGACTGTTCACTAAGTTGCA  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTCCTGCTCCCGAACAC-ACCCTACTAAATTGACTGTTCACTAAGTTGCA  999

seq1  CTTTGGTGGTATCTCTC-TTTTGGTCTATTGT-ACATTCAGTC-TCTGGG  1047
      ||||||| || || ||| |||||||||||||| |||||||||| ||| | 
seq2  CTTTGGTTGTTTC-CTCTTTTTGGTCTATTGTAACATTCAGTCTTCTAGA  1048

seq1  AGTGAGT  1054
      |||||||
seq2  AGTGAGT  1055

seq1: chr2_77871915_77872349
seq2: B6Ng01-041A20.g_69_503 (reverse)

seq1  GGAGGAGGAGGAGGAGGAGGAGAGTCGGAAGAAGAAACCAAGTACAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGAGGAGGAGGAGAGTCGGAAGAAGAAACCAAGTACAAAGT  50

seq1  TTGGTGTTAGTAAGGATGGTTGATTTTGGAGTAAGGGGTGAAGATGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTTAGTAAGGATGGTTGATTTTGGAGTAAGGGGTGAAGATGATCA  100

seq1  AAATATGTTCTACAAAATTCTTAAAGAACTAATAAAGAGAAGTCCCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTTCTACAAAATTCTTAAAGAACTAATAAAGAGAAGTCCCTGAA  150

seq1  ATTTAAAAAATAAATAAATAAAAAATGACATTGGAGATTTGATTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAATAAATAAATAAAAAATGACATTGGAGATTTGATTTTTTTT  200

seq1  TGTTATAGGTGAAAATGGGGTCTCATTCATTCTTGGTGGTTGCACTGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAGGTGAAAATGGGGTCTCATTCATTCTTGGTGGTTGCACTGCCA  250

seq1  TAATATAATTTTTTCTTATTTTAATGCATATTTCACCTTACAAAATTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAATTTTTTCTTATTTTAATGCATATTTCACCTTACAAAATTATT  300

seq1  TCTGTAAGGCACTGTGATACCAGCCTTAGGGACGCAAAGGCAGGCTAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGGCACTGTGATACCAGCCTTAGGGACGCAAAGGCAGGCTAGCA  350

seq1  CCATGAGTTTGAGGCCAGCCTGGGGCACATAGAAAGATACTGTCTCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGTTTGAGGCCAGCCTGGGGCACATAGAAAGATACTGTCTCAAAA  400

seq1  GTAATTACTACTTAATTTAAATATATTTTGAATTC  435
      |||||||||||||||||||||||||||||||||||
seq2  GTAATTACTACTTAATTTAAATATATTTTGAATTC  435