BAC Information

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BAC

Clone NameB6Ng01-041D19
Chromosome2 (Build37)
Map Location 116,861,329 - 117,012,462
singlet/doubletdoublet
Overlap geneLOC241621, Spred1
Upstream geneMrg1, G630016G05Rik, 2810405F15Rik, LOC433464, Tmco5, LOC100043557
Downstream geneLOC624574, 2610510H03Rik, Rasgrp1, Thbs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041D19.bB6Ng01-041D19.g
ACCDH867953DH867954
length1,1811,054
definitionDH867953|Mus musculus domesticus DNA, BAC clone: B6Ng01-041D19, 5' end.DH867954|Mus musculus domesticus DNA, BAC clone: B6Ng01-041D19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,011,261 - 117,012,462)(116,861,329 - 116,862,396)
sequence
gaattcctgggatgtgctaccatgcctggcttcacagggcaagtgagtaa
gcccttgaatgtttcttagatatgtaacttcacgaagatgagaagtacct
atagccaagccttttgaaatttattgcccaatatagtcatttaaataaat
ttcctacgtatatatgaaaataaagtttctcttatatttttaaaggtttg
ttttccttgcatgtatgtatgtatattcacaagtgtctgcaaagaacaac
agagggtgtcagatctcctaaaactggaggttcagaccgatagatgtaag
ctaccatgtggcactgggaactgaacccaggtcctctccatgagcagcga
tcactctcaaccacctctccagacccttttttttttggtaattttgagaa
actctggctcaagaattcaaggatacagttcctcttggtggtgcagtcac
ggcaacaggagctgcggcagctgatcatgctttctctgcatcaggaagta
gagggagatgagtcagtgttggaggttagctagctttccccctttacctc
agaatgattctacccagtttgtatgggtcttccttcccacctcagttagt
tctgaggctcgtttccatggagatcctagatccttgaaatctagatgata
aagctgacaatcaagattaaccatcaggcagggaacaaattaaaacccta
agaaaagaaccatttcactagaagaaaggggcttcagacattagggagat
aagtctaagataacacacaggacagcccagtagacgggttgttggagtgc
ctgcctctcgtgctcaggacagtgagctcattctcagaagcaccaacttt
tataaccttctctttccaaagggaaatgatttttagtcagtcgcagatca
aggtgcagaagtaatggatgggtgcccacatttacacagcacatagactt
gagttgcacttatgaccaggaagcaaacagaggcctctttgtagaatcta
ggcattgcaaaaactgttgaagcttaccctgtttctctgtcatctaatat
tcaaagcctaacctctttttgtggcctataccgaagtcaggagttaattt
acctattgcgtgcctgatggaatttatgcatgtgataccgggccaagatt
caaaatggtgtgactcttggaactggaatta
gaattcagcaggtaatagaagaagaacaaataacagaattgatgtacaat
gaccaaggaggaaatagaaggtttgtggccatttgggtttaattacaagt
ctttctttagctgctcactgtggttaggagaagcagacaaaagagctgcc
tctgagggcaagagcagatgatgagcagagccagaaagagagctgaagca
ggttagcaagtctgatgggcatgaccaggcaaaatgaactgtcaagggct
gtaacttccagaagtggtgggggtcagctaaaagagcagaactgaatgtc
ccagggggtagataaaccaaagaaaaaggaaggccacctccaaaggaagc
tgacaatattgccagttacatgatccaaaggaatctaggaacctcgagtc
ccatccaaagcatggtctacagccccagatctgtgtaaaagtggagaatg
tttgtctcccttgtaacatttggcagtgtctggagacaggattgtcatgt
atggtttgggagaaattattcataatgggtaagtaaaggatagagaggaa
aaggtcagccccacccccaccccaacaaggcatgacctaccccaaaggcg
aatcttctgagtcctgggggtctctgagcaggactgtgcctggcaaagcc
atgcagcaacaaccaagaaagagaaccgtgggcacattaagcatttactc
ctgcggtcaacgttccagcagcccttcagcacttaccatggcactcaatc
taagaggttaaaaccgttagcctcacggtttatcagcagctcaagaagtc
agctgggcaagatgccacaggcttataatctcagcacttgagagaaggag
tcagaggatcactgcaagttcaaggccccgctaagatatctatttaaaaa
gagaactttcagaagtttactgtacactactgttaatttctcttgttctt
tgagatatgtctcatgtttgcagaagtaatgagagatatgtccagcatcc
cagaagccttcattcagtgtggccaggagggaagtgccagaaatacagtg
tggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_117011261_117012462
seq2: B6Ng01-041D19.b_46_1226 (reverse)

seq1  TAATTCCAGTTCCACAAGATACAACACCATCTTCTGACTCTTGTGGCCAC  50
      ||||||||||||  |||||  | ||||||  || ||| |||  ||||  |
seq2  TAATTCCAGTTC--CAAGAGTC-ACACCA--TTTTGAATCT--TGGC--C  41

seq1  CTGTATACACATGCATATAAATTTCATACAGGCACGCATAAGTAAAATTA  100
      | |||| |||||||  ||||||| ||| ||||||||||  ||  ||||||
seq2  CGGTAT-CACATGC--ATAAATTCCAT-CAGGCACGCAATAGGTAAATTA  87

seq1  AATCCTGACTTCAGTATTAAGGCCACTAAAAGA-GTTATGCTTTGAATAT  149
      | |||||||||| ||||  ||||||| |||||| |||| |||||||||| 
seq2  ACTCCTGACTTCGGTAT--AGGCCACAAAAAGAGGTTAGGCTTTGAATA-  134

seq1  TTAGATGACAGTAGAAACAGGGTGAGCCTCTACCATGTTTTTGCAATGCC  199
      ||||||||||| ||||||||||| ||| || ||   ||||||||||||||
seq2  TTAGATGACAG-AGAAACAGGGTAAGCTTCAAC--AGTTTTTGCAATGCC  181

seq1  TTAGATTCTAACAAAGAGGCCTCTGTTTGCTTCCTGGTCAT-AGTGCAAC  248
       |||||||| ||||||||||||||||||||||||||||||| ||||||| 
seq2  -TAGATTCT-ACAAAGAGGCCTCTGTTTGCTTCCTGGTCATAAGTGCAA-  228

seq1  CTCAAGTCTATTGTGCTGTGTAAATGTGGGCACCCATCCATTACTTCCTG  298
      |||||||||| ||||||||||||||||||||||||||||||||||| |||
seq2  CTCAAGTCTA-TGTGCTGTGTAAATGTGGGCACCCATCCATTACTT-CTG  276

seq1  CACCTTGATCTGCGACTGACT-AAAATCATTTCCCTTTGGAAAGAGAAGG  347
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACCTTGATCTGCGACTGACTAAAAATCATTTCCCTTTGGAAAGAGAAGG  326

seq1  TTATTAAAAGTTGGTGCTTCTGAGAATGAGCTCACTGTCCTGAGCACGAG  397
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTA-TAAAAGTTGGTGCTTCTGAGAATGAGCTCACTGTCCTGAGCACGAG  375

seq1  AGGCAGGCACTCCAACAACCCGTCTACTGGGCTGTCCTGTGTGTTATCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCACTCCAACAACCCGTCTACTGGGCTGTCCTGTGTGTTATCTT  425

seq1  AGACTTATCTCCCTAATGTCTGAAGCCCCTTTCTTCTAGTG-AATGGTTC  496
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGACTTATCTCCCTAATGTCTGAAGCCCCTTTCTTCTAGTGAAATGGTTC  475

seq1  TTTTCTTAGGGTTTTAATTTGTTCCCTGCCTGATGGTTAATCTTGATTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTAGGGTTTTAATTTGTTCCCTGCCTGATGGTTAATCTTGATTGT  525

seq1  CAGCTTTATCATCTAGATTTCAAGGATCTAGGATCTCCATGGAAACGAGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTATCATCTAGATTTCAAGGATCTAGGATCTCCATGGAAACGAGC  575

seq1  CTCAGAACTAACTGAGGTGGGAAGGAAGACCCATACAAACTGGGTAGAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAACTAACTGAGGTGGGAAGGAAGACCCATACAAACTGGGTAGAAT  625

seq1  CATTCTGAGGTAAAGGGGGAAAGCTAGCTAACCTCCAACACTGACTCATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGAGGTAAAGGGGGAAAGCTAGCTAACCTCCAACACTGACTCATC  675

seq1  TCCCTCTACTTCCTGATGCAGAGAAAGCATGATCAGCTGCCGCAGCTCCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTACTTCCTGATGCAGAGAAAGCATGATCAGCTGCCGCAGCTCCT  725

seq1  GTTGCCGTGACTGCACCACCAAGAGGAACTGTATCCTTGAATTCTTGAGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCGTGACTGCACCACCAAGAGGAACTGTATCCTTGAATTCTTGAGC  775

seq1  CAGAGTTTCTCAAAATTACCAAAAAAAAAAGGGTCTGGAGAGGTGGTTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTCTCAAAATTACCAAAAAAAAAAGGGTCTGGAGAGGTGGTTGA  825

seq1  GAGTGATCGCTGCTCATGGAGAGGACCTGGGTTCAGTTCCCAGTGCCACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATCGCTGCTCATGGAGAGGACCTGGGTTCAGTTCCCAGTGCCACA  875

seq1  TGGTAGCTTACATCTATCGGTCTGAACCTCCAGTTTTAGGAGATCTGACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCTTACATCTATCGGTCTGAACCTCCAGTTTTAGGAGATCTGACA  925

seq1  CCCTCTGTTGTTCTTTGCAGACACTTGTGAATATACATACATACATGCAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTTGTTCTTTGCAGACACTTGTGAATATACATACATACATGCAA  975

seq1  GGAAAACAAACCTTTAAAAATATAAGAGAAACTTTATTTTCATATATACG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACAAACCTTTAAAAATATAAGAGAAACTTTATTTTCATATATACG  1025

seq1  TAGGAAATTTATTTAAATGACTATATTGGGCAATAAATTTCAAAAGGCTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATTTATTTAAATGACTATATTGGGCAATAAATTTCAAAAGGCTT  1075

seq1  GGCTATAGGTACTTCTCATCTTCGTGAAGTTACATATCTAAGAAACATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATAGGTACTTCTCATCTTCGTGAAGTTACATATCTAAGAAACATTC  1125

seq1  AAGGGCTTACTCACTTGCCCTGTGAAGCCAGGCATGGTAGCACATCCCAG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTTACTCACTTGCCCTGTGAAGCCAGGCATGGTAGCACATCCCAG  1175

seq1  GAATTC  1202
      ||||||
seq2  GAATTC  1181

seq1: chr2_116861329_116862396
seq2: B6Ng01-041D19.g_69_1121

seq1  GAATTCAGCAGGTAATAGAAGAAGAACAAATAACAGAATTGATGTACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGGTAATAGAAGAAGAACAAATAACAGAATTGATGTACAAT  50

seq1  GACCAAGGAGGAAATAGAAGGTTTGTGGCCATTTGGGTTTAATTACAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGGAGGAAATAGAAGGTTTGTGGCCATTTGGGTTTAATTACAAGT  100

seq1  CTTTCTTTAGCTGCTCACTGTGGTTAGGAGAAGCAGACAAAAGAGCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTAGCTGCTCACTGTGGTTAGGAGAAGCAGACAAAAGAGCTGCC  150

seq1  TCTGAGGGCAAGAGCAGATGATGAGCAGAGCCAGAAAGAGAGCTGAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGGCAAGAGCAGATGATGAGCAGAGCCAGAAAGAGAGCTGAAGCA  200

seq1  GGTTAGCAAGTCTGATGGGCATGACCAGGCAAAATGAACTGTCAAGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGCAAGTCTGATGGGCATGACCAGGCAAAATGAACTGTCAAGGGCT  250

seq1  GTAACTTCCAGAAGTGGTGGGGGTCAGCTAAAAGAGCAGAACTGAATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTCCAGAAGTGGTGGGGGTCAGCTAAAAGAGCAGAACTGAATGTC  300

seq1  CCAGGGGGTAGATAAACCAAAGAAAAAGGAAGGCCACCTCCAAAGGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGGTAGATAAACCAAAGAAAAAGGAAGGCCACCTCCAAAGGAAGC  350

seq1  TGACAATATTGCCAGTTACATGATCCAAAGGAATCTAGGAACCTCGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATATTGCCAGTTACATGATCCAAAGGAATCTAGGAACCTCGAGTC  400

seq1  CCATCCAAAGCATGGTCTACAGCCCCAGATCTGTGTAAAAGTGGAGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAAAGCATGGTCTACAGCCCCAGATCTGTGTAAAAGTGGAGAATG  450

seq1  TTTGTCTCCCTTGTAACATTTGGCAGTGTCTGGAGACAGGATTGTCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCCCTTGTAACATTTGGCAGTGTCTGGAGACAGGATTGTCATGT  500

seq1  ATGGTTTGGGAGAAATTATTCATAATGGGTAAGTAAAGGATAGAGAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTGGGAGAAATTATTCATAATGGGTAAGTAAAGGATAGAGAGGAA  550

seq1  AAGGTCAGCCCCACCCCCACCCCAACAAGGCATGACCTACCCCAAAGGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAGCCCCACCCCCACCCCAACAAGGCATGACCTACCCCAAAGGCG  600

seq1  AATCTTCTGAGTCCTGGGGGTCTCTGAGCAGGACTGTGCCTGGCAAAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTGAGTCCTGGGGGTCTCTGAGCAGGACTGTGCCTGGCAAAGCC  650

seq1  ATGCAGCAACAACCAAGAAAGAGAACCGTGGGCACATTAAGCATTTACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCAACAACCAAGAAAGAGAACCGTGGGCACATTAAGCATTTACTC  700

seq1  CTGCGGTCAACGTTCCAGCAGCCCTTCAGCACTTACCATGGCACTCAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGTCAACGTTCCAGCAGCCCTTCAGCACTTACCATGGCACTCAATC  750

seq1  TAAGAGGTTAAAACCGTTAGCCTCACGGTTTATCAGCAGCTCAAGAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGTTAAAACCGTTAGCCTCACGGTTTATCAGCAGCTCAAGAAGTC  800

seq1  AGCTGGGCAAGATGCCACAGGCTTATAATCTCAGCACTTGAGAGAAGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGCAAGATGCCACAGGCTTATAATCTCAGCACTTGAGAGAAGGAG  850

seq1  TCAGGAGGATCACTGCAAGTTCAAGGCCCCGCTAAGATATCTATTTAAAA  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCA-GAGGATCACTGCAAGTTCAAGGCCCCGCTAAGATATCTATTTAAAA  899

seq1  AAAGAACTTTCAAGAAGTTTTACTGTTACAACTACTGTTAATTTCTTCTT  950
      | ||||||||| ||||| ||||||| ||| ||||||||||||||||   |
seq2  AGAGAACTTTC-AGAAG-TTTACTG-TAC-ACTACTGTTAATTTCT--CT  943

seq1  TGTTCTTTGAAGATTATGTCTCAGTGTTTGCAGAAGTAATGAGAGAATAT  1000
      ||||||||| ||| ||||||||| ||||||||||||||||||||| ||||
seq2  TGTTCTTTG-AGA-TATGTCTCA-TGTTTGCAGAAGTAATGAGAG-ATAT  989

seq1  GTCCAGCATTCCCAGAAGCCTTCATTTCAGTGTGGCCAGGAAGGGAAGTG  1050
      |||||||| ||||||||||||||| ||||||||||||||| |||||||||
seq2  GTCCAGCA-TCCCAGAAGCCTTCA-TTCAGTGTGGCCAGG-AGGGAAGTG  1036

seq1  CCAAGAATAACAGTGTGG  1068
      || ||||  |||||||||
seq2  CC-AGAAATACAGTGTGG  1053