BAC Information

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BAC

Clone NameB6Ng01-041F17
Chromosome2 (Build37)
Map Location 50,382,085 - 50,516,151
singlet/doubletdoublet
Overlap genenone
Upstream geneEpc2, Kif5c, 2310010M24Rik, Lypd6, 2010311D03Rik, LOC666781
Downstream geneLOC227885, Rnd3, LOC666802, LOC666810, LOC100041614, Tas2r134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041F17.bB6Ng01-041F17.g
ACCDH868043DH868044
length1,117698
definitionDH868043|Mus musculus domesticus DNA, BAC clone: B6Ng01-041F17, 5' end.DH868044|Mus musculus domesticus DNA, BAC clone: B6Ng01-041F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,515,024 - 50,516,151)(50,382,085 - 50,382,782)
sequence
gaattcactttttctgaagtgatttattcacgttgcagatcattcctttg
tttggctgtttaattttctttggaacaaatatgttatgtttagttactct
caactatataattaaattttaattatttctaatttagtactacggatgta
tatatgtctttttgttggcctacctgttttccatcacgaaccttgtaaat
actgggactcactacagcacaaccttggacaagagcttccctgggttgtg
aagactaacactcaaggaaactgttcaaagctttcaccaaagtttatttg
aaaagaatgacaatagcctttataaggggatgaagccaatccttacacaa
acgtgaacaggtccttgaaaagggaagtttcaccatcttgtaatagagga
tgcactactattcaggcaggaccctctctcagtttcctttgaaatgagtc
atcatcagttacagcacacagctgggaaggaagtttatgctgctggtcca
cacacatgtgcatgtccttattaacccatgtttcagtctcttacctcttc
ttggaagatatctgacttcacgttctaagaggctttaaactcaatattct
caggcatttacagtgcattctaagattgctcatgcaaatacaagcatgtg
aacaaacatcttctttcccactggcaaagtgtatttttgatacatttcag
gaacggagcctcagggagctattctgtcagggtgattaaaaatggaaact
ggtagctgttgctgccatgggagagtaataaccagtataaactcacccca
ctggagaaataagcaatgacttatattttattccattcccccaagatttt
atagtctattaatgatcactgattttcagttaatatggttcttgtaatta
aacaaaacatcaaattatattttccgccataattattgtgtagcatgatg
gggttttggtgctactgaaaaattttttttaaataccaattgtatttttc
aacatgtaatctctggaataatatataatacctcaaatggctacagccaa
agcaggtaaactgaggttcggcttctaaccttaacaaatactagaacagg
atgttattcttatctac
gaattctgcatagtagaaaaaggaccacttcccatcccaaggaaggtgat
ggcagagtggaataaatgcactaattgttcttcaaataaaatctgtgaaa
aatttaaatgaacatctgtttgaagaatagagctattaaagggaatgttc
tgcacagacaatatgccgcgcaggatagttgtacaaataatgctgtgaaa
ttgtttaattaactcataaaagagggagtctactaaaggaaacataagca
ctacactccggagatgtttgacagtcttcaagagcagatgtgattatggt
tataattattttagtaaattgagccataatttctctttctgttgtaaaat
aaggtatattatgaatcctaaataggataaacctttaaacataaataatt
cattcaaacctgacttcggcattgtgatcctttctcaagatgtgcttgag
taaatatgactgagccgagcaagtactcaatgtgagacttgaaccgtaag
gaggtctggcttcatgtgtgtgctatggaaattggtttcaatattttata
gagagaacttctgtcatagatctggatgtttgcccctaggaagcaccaat
tatttataaaataatggtgtatatggatatgggtaattttattttcctaa
taaaggaaatacactcagaggtcttatggtgttgaatatgaaggctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_50515024_50516151
seq2: B6Ng01-041F17.b_46_1161 (reverse)

seq1  TAGATAAGATTTACA--CTGTTCTTAGTATTTTGTTAATGCTTAGAAGGC  48
      ||||||||| | |||  |||||| ||||| |||||||| | |||||| ||
seq2  TAGATAAGAATAACATCCTGTTC-TAGTA-TTTGTTAA-GGTTAGAA-GC  46

seq1  CGACTCTCAGATTTACCCTGCTTTTGCTTGTAGCCATTTGGGGTATATAT  98
      |||  ||||| |||| |||||||| || |||||||||||| ||||| |||
seq2  CGAACCTCAG-TTTA-CCTGCTTTGGC-TGTAGCCATTTGAGGTAT-TAT  92

seq1  ATTATTTATTCCAGAGATTAACATGTTGAAAAATACAATTGGTGATTTAA  148
      ||   |||||||||||||| ||||||||||||||||||||||| |||| |
seq2  AT--ATTATTCCAGAGATT-ACATGTTGAAAAATACAATTGGT-ATTT-A  137

seq1  AAAAAAATTTTTCAGTAGCACCAAAACCCCATCATGCTACACAATAATTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTTTTCAGTAGCACCAAAACCCCATCATGCTACACAATAATTA  187

seq1  TGGCGGAAAATATAATTTGATGTTTTGTTTTAATTACAAGAACCATATTA  248
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGCGGAAAATATAATTTGATGTTTTG-TTTAATTACAAGAACCATATTA  236

seq1  ACTGAAAATCAGTGATCATTAATAGACTATAAAATCTTGGGGGAATGGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAATCAGTGATCATTAATAGACTATAAAATCTTGGGGGAATGGAA  286

seq1  TAAAATATAAGTCATTGCTTATTTCTCCAGTGGGGTGAGTTTATACTGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATAAGTCATTGCTTATTTCTCCAGTGGGGTGAGTTTATACTGGT  336

seq1  TATTACTCTCCCATGGCAGCAACAGCTACCAGTTTCCATTTTTAATCACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTCTCCCATGGCAGCAACAGCTACCAGTTTCCATTTTTAATCACC  386

seq1  CTGACAGAATAGCTCCCTGAGGCTCCGTTCCTGAAATGTATCAAAAATAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGAATAGCTCCCTGAGGCTCCGTTCCTGAAATGTATCAAAAATAC  436

seq1  ACTTTGCCAGTGGGAAAGAAGATGTTTGTTCACATGCTTGTATTTGCATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCCAGTGGGAAAGAAGATGTTTGTTCACATGCTTGTATTTGCATG  486

seq1  AGCAATCTTAGAATGCACTGTAAATGCCTGAGAATATTGAGTTTAAAGCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCTTAGAATGCACTGTAAATGCCTGAGAATATTGAGTTTAAAGCC  536

seq1  TCTTAGAACGTGAAGTCAGATATCTTCCAAGAAGAGGTAAGAGACTGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAACGTGAAGTCAGATATCTTCCAAGAAGAGGTAAGAGACTGAAA  586

seq1  CATGGGTTAATAAGGACATGCACATGTGTGTGGACCAGCAGCATAAACTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTTAATAAGGACATGCACATGTGTGTGGACCAGCAGCATAAACTT  636

seq1  CCTTCCCAGCTGTGTGCTGTAACTGATGATGACTCATTTCAAAGGAAACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCAGCTGTGTGCTGTAACTGATGATGACTCATTTCAAAGGAAACT  686

seq1  GAGAGAGGGTCCTGCCTGAATAGTAGTGCATCCTCTATTACAAGATGGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGGTCCTGCCTGAATAGTAGTGCATCCTCTATTACAAGATGGTG  736

seq1  AAACTTCCCTTTTCAAGGACCTGTTCACGTTTGTGTAAGGATTGGCTTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCCCTTTTCAAGGACCTGTTCACGTTTGTGTAAGGATTGGCTTCA  786

seq1  TCCCCTTATAAAGGCTATTGTCATTCTTTTCAAATAAACTTTGGTGAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTATAAAGGCTATTGTCATTCTTTTCAAATAAACTTTGGTGAAAG  836

seq1  CTTTGAACAGTTTCCTTGAGTGTTAGTCTTCACAACCCAGGGAAGCTCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAACAGTTTCCTTGAGTGTTAGTCTTCACAACCCAGGGAAGCTCTT  886

seq1  GTCCAAGGTTGTGCTGTAGTGAGTCCCAGTATTTACAAGGTTCGTGATGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGGTTGTGCTGTAGTGAGTCCCAGTATTTACAAGGTTCGTGATGG  936

seq1  AAAACAGGTAGGCCAACAAAAAGACATATATACATCCGTAGTACTAAATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGTAGGCCAACAAAAAGACATATATACATCCGTAGTACTAAATT  986

seq1  AGAAATAATTAAAATTTAATTATATAGTTGAGAGTAACTAAACATAACAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAATTAAAATTTAATTATATAGTTGAGAGTAACTAAACATAACAT  1036

seq1  ATTTGTTCCAAAGAAAATTAAACAGCCAAACAAAGGAATGATCTGCAACG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCCAAAGAAAATTAAACAGCCAAACAAAGGAATGATCTGCAACG  1086

seq1  TGAATAAATCACTTCAGAAAAAGTGAATTC  1128
      ||||||||||||||||||||||||||||||
seq2  TGAATAAATCACTTCAGAAAAAGTGAATTC  1116

seq1: chr2_50382085_50382782
seq2: B6Ng01-041F17.g_70_767

seq1  GAATTCTGCATAGTAGAAAAAGGACCACTTCCCATCCCAAGGAAGGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATAGTAGAAAAAGGACCACTTCCCATCCCAAGGAAGGTGAT  50

seq1  GGCAGAGTGGAATAAATGCACTAATTGTTCTTCAAATAAAATCTGTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGTGGAATAAATGCACTAATTGTTCTTCAAATAAAATCTGTGAAA  100

seq1  AATTTAAATGAACATCTGTTTGAAGAATAGAGCTATTAAAGGGAATGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAATGAACATCTGTTTGAAGAATAGAGCTATTAAAGGGAATGTTC  150

seq1  TGCACAGACAATATGCCGCGCAGGATAGTTGTACAAATAATGCTGTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGACAATATGCCGCGCAGGATAGTTGTACAAATAATGCTGTGAAA  200

seq1  TTGTTTAATTAACTCATAAAAGAGGGAGTCTACTAAAGGAAACATAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAATTAACTCATAAAAGAGGGAGTCTACTAAAGGAAACATAAGCA  250

seq1  CTACACTCCGGAGATGTTTGACAGTCTTCAAGAGCAGATGTGATTATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTCCGGAGATGTTTGACAGTCTTCAAGAGCAGATGTGATTATGGT  300

seq1  TATAATTATTTTAGTAAATTGAGCCATAATTTCTCTTTCTGTTGTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTATTTTAGTAAATTGAGCCATAATTTCTCTTTCTGTTGTAAAAT  350

seq1  AAGGTATATTATGAATCCTAAATAGGATAAACCTTTAAACATAAATAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATATTATGAATCCTAAATAGGATAAACCTTTAAACATAAATAATT  400

seq1  CATTCAAACCTGACTTCGGCATTGTGATCCTTTCTCAAGATGTGCTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAACCTGACTTCGGCATTGTGATCCTTTCTCAAGATGTGCTTGAG  450

seq1  TAAATATGACTGAGCCGAGCAAGTACTCAATGTGAGACTTGAACCGTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGACTGAGCCGAGCAAGTACTCAATGTGAGACTTGAACCGTAAG  500

seq1  GAGGTCTGGCTTCATGTGTGTGCTATGGAAATTGGTTTCAATATTTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTGGCTTCATGTGTGTGCTATGGAAATTGGTTTCAATATTTTATA  550

seq1  GAGAGAACTTCTGTCATAGATCTGGATGTTTGCCCCTAGGAAGCACCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACTTCTGTCATAGATCTGGATGTTTGCCCCTAGGAAGCACCAAT  600

seq1  TATTTATAAAATAATGGTGTATATGGATATGGGTAATTTTATTTTCCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAAAATAATGGTGTATATGGATATGGGTAATTTTATTTTCCTAA  650

seq1  TAAAGGAAATACACTCAGAGGTCTTATGGTGTTGAACATGAAGGCTAC  698
      |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAAAGGAAATACACTCAGAGGTCTTATGGTGTTGAATATGAAGGCTAC  698