BAC Information

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BAC

Clone NameB6Ng01-041K08
Chromosome2 (Build37)
Map Location 46,499,700 - 46,616,095
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042661, LOC100041337, LOC666604, LOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041K08.bB6Ng01-041K08.g
ACCDH868248DH868249
length1,1871,029
definitionDH868248|Mus musculus domesticus DNA, BAC clone: B6Ng01-041K08, 5' end.DH868249|Mus musculus domesticus DNA, BAC clone: B6Ng01-041K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,614,894 - 46,616,095)(46,499,700 - 46,500,738)
sequence
gaattctctcctcccaccaaaaagtaaaaattttaattgtaaaattggaa
agtatttataagaataataaaattctagtctgctcttggagacattttaa
ctttctatgaaagaaattccagtagttaaaataatatttatatcaacagt
actaatattaaaatgatatcgtaatgtctaaaacaaaaaaatcagtaaca
acttaggactgtagaggcaggaaaattagtttaatcacaaaaatattgaa
tgtatccagaaagcatactttataaaaagttcttcaaaaattttccttta
aaagcatttattggtaaaaagatgtaacagatatatgcaggctgaataca
cacaaagacatacaatttgtccatagccaccaactatgtccagagagata
aataacttattcctaaggaagaagttatcacttgtaaactgacaaaatgc
tttagaacaagtatcaaggaaaacagatcagaaaaacaaaaggtcagtaa
ctacacaaaacatctctgactgaagaagtgtgtaaccctgtcatgtatct
cataagcagaaacacctaactctatagtagtgatggttccactaatctac
catttgaccagcaggatttttggtaaggtgccaactggcagagaacttct
gacttttcccaggatgcctgttttgtccctcctaataaccaaggacactt
gattggctgactgtctactcatcccttgcttcatccaattcaagtgctgc
accttgcttcaggacaaaggccctgtgtgcagaagtctatctctaaagtt
tggctcaaacttaaagcctggttcaaccctgtagctttctaacttgcatc
cttaatatcttatctaggaaccattttagatctaaaaagttgcagagaat
gaaagaattgtagcttgaaatttcactgtaattcagtaagctctctcagg
tggagaagtatacatatggctacatatacttctggcataggacattatgg
tagggtccactcactaaaattaaaatacagactttacctagttgcttctc
ttgctgttataaataccggaccaaacgttaaattgggggaaatgttattt
cagtttaagttgtccagcctgaaacgaatccaaatagaacttaggcctga
acattcttgagggagctttagcaggccatggaggaac
gaattcacacacacacacaaatgtgtaagaaggaaagagaagacaaagct
acaacaaaagataaaaagaaaaataaggctatatattatttaaacatttt
gggtcatggtatagcatatttaatttcaaacaactcataaagagtatgtt
ctcttagcagaatgattataattaaatccattaacaataggaacatattt
ctatctatgccagaatagcccaaactggcaacaaagtaaaccaagtgcct
ttccacattttaaaatagttcagtcaagttttcaaattttagaattagtt
gttctacccaaaggtggggcatgggttatggttcttaagttcagagtgag
gtatgaccagtaggtagtaccaagtcttatgtctgaatgtcattttcagt
cctaactaagttcttctcttccattgtgtctttaattttttgtttgagat
agtgacaaatccatcatgaattcctcttttccttcctacaaattcataga
ggagtcatttttttcacagattttatgaacaccagcctaaacacctcttt
gtcacctttttcattataaaagtgactcttaccttttaatttaaagcaag
tggttcatgtgatatctgtgacccatctgtacagccagttttgatgcctt
ttgcttgggagcatcacaatatcatataaatgccacttgaaaacaaccct
tgtgataaatgcagcagttgatggatagctaatgtagtcattacatggaa
aatattcagacagtctacttgaaatcattgggcacaactgactcataggt
aacagacagcaaagaaaacaagatcattgtcctgcaatgggcactgaaac
tcacatggatctgggaggcttttagtgacaaggaaaaagaaaatataaaa
taactctgtttgtgtgatttcactgtattacacagctgacacacattctg
tggtcaggtgggaatggtgaattacattgagtagggtgcacagatagaag
taggacttgaaattgaaaatatgattgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_46614894_46616095
seq2: B6Ng01-041K08.b_48_1234 (reverse)

seq1  GTTCCTCCATGGCCCCTGCTTAAGCTCCTCCATGAATGTTCAGGCCTTGA  50
      ||||||||||||  |||||| |||||||  || ||||||||||||| | |
seq2  GTTCCTCCATGG--CCTGCTAAAGCTCCCTCAAGAATGTTCAGGCC-TAA  47

seq1  GTTCCTTATCTGACTTCTGTTCATGCTGGACAACTTAAACTGAAATAAAC  100
      ||||  ||| ||  |||  |||| ||||||||||||||||||||||||  
seq2  GTTC--TATTTGGATTCGTTTCAGGCTGGACAACTTAAACTGAAATAA--  93

seq1  CATTTCTCCCCCAATTT-ACGTTTGGTCCCGGTATTTTATAACAGCAAGA  149
      ||||  ||||||||||| ||||||||| |||||| |||||||||||||||
seq2  CATT--TCCCCCAATTTAACGTTTGGT-CCGGTA-TTTATAACAGCAAGA  139

seq1  GAAAGCAAACTAGGT-AAGTCTGTATTTTAATTTTTAGTGAGTGGAACCC  198
      | |||| |||||||| ||||||||||||||| ||||||||||||| ||||
seq2  G-AAGC-AACTAGGTAAAGTCTGTATTTTAA-TTTTAGTGAGTGG-ACCC  185

seq1  TACCATAATTGTCCTATGCCAGAAGTATATGTAGCCATATGTATACTTCT  248
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TACCATAA-TGTCCTATGCCAGAAGTATATGTAGCCATATGTATACTTCT  234

seq1  CCACCCTGAGAGAGCTTACTGAATTACAGTGAAATTTCAAGCTACAATTC  298
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCA-CCTGAGAGAGCTTACTGAATTACAGTGAAATTTCAAGCTACAATTC  283

seq1  TTTCATTCTCTGCAACTTTTTAGATCTAAAATGGTTCCTAGATAAGATAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCTCTGCAACTTTTTAGATCTAAAATGGTTCCTAGATAAGATAT  333

seq1  TAAGGATGCAAGTTAGAAAGCTACAGGGTTGAACCAGGCTTTAAGTTTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATGCAAGTTAGAAAGCTACAGGGTTGAACCAGGCTTTAAGTTTGA  383

seq1  GCCAAACTTTAGAGATAGACTTCTGCACACAGGGCCTTTGTCCTGAAGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACTTTAGAGATAGACTTCTGCACACAGGGCCTTTGTCCTGAAGCA  433

seq1  AGGTGCAGCACTTGAATTGGATGAAGCAAGGGATGAGTAGACAGTCAGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCAGCACTTGAATTGGATGAAGCAAGGGATGAGTAGACAGTCAGCC  483

seq1  AATCAAGTGTCCTTGGTTATTAGGAGGGACAAAACAGGCATCCTGGGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGTGTCCTTGGTTATTAGGAGGGACAAAACAGGCATCCTGGGAAA  533

seq1  AGTCAGAAGTTCTCTGCCAGTTGGCACCTTACCAAAAATCCTGCTGGTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAGTTCTCTGCCAGTTGGCACCTTACCAAAAATCCTGCTGGTCA  583

seq1  AATGGTAGATTAGTGGAACCATCACTACTATAGAGTTAGGTGTTTCTGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGATTAGTGGAACCATCACTACTATAGAGTTAGGTGTTTCTGCT  633

seq1  TATGAGATACATGACAGGGTTACACACTTCTTCAGTCAGAGATGTTTTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGATACATGACAGGGTTACACACTTCTTCAGTCAGAGATGTTTTGT  683

seq1  GTAGTTACTGACCTTTTGTTTTTCTGATCTGTTTTCCTTGATACTTGTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTACTGACCTTTTGTTTTTCTGATCTGTTTTCCTTGATACTTGTTC  733

seq1  TAAAGCATTTTGTCAGTTTACAAGTGATAACTTCTTCCTTAGGAATAAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATTTTGTCAGTTTACAAGTGATAACTTCTTCCTTAGGAATAAGT  783

seq1  TATTTATCTCTCTGGACATAGTTGGTGGCTATGGACAAATTGTATGTCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATCTCTCTGGACATAGTTGGTGGCTATGGACAAATTGTATGTCTT  833

seq1  TGTGTGTATTCAGCCTGCATATATCTGTTACATCTTTTTACCAATAAATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATTCAGCCTGCATATATCTGTTACATCTTTTTACCAATAAATG  883

seq1  CTTTTAAAGGAAAATTTTTGAAGAACTTTTTATAAAGTATGCTTTCTGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAGGAAAATTTTTGAAGAACTTTTTATAAAGTATGCTTTCTGGA  933

seq1  TACATTCAATATTTTTGTGATTAAACTAATTTTCCTGCCTCTACAGTCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCAATATTTTTGTGATTAAACTAATTTTCCTGCCTCTACAGTCCT  983

seq1  AAGTTGTTACTGATTTTTTTGTTTTAGACATTACGATATCATTTTAATAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTTACTGATTTTTTTGTTTTAGACATTACGATATCATTTTAATAT  1033

seq1  TAGTACTGTTGATATAAATATTATTTTAACTACTGGAATTTCTTTCATAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTGTTGATATAAATATTATTTTAACTACTGGAATTTCTTTCATAG  1083

seq1  AAAGTTAAAATGTCTCCAAGAGCAGACTAGAATTTTATTATTCTTATAAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAAAATGTCTCCAAGAGCAGACTAGAATTTTATTATTCTTATAAA  1133

seq1  TACTTTCCAATTTTACAATTAAAATTTTTACTTTTTGGTGGGAGGAGAGA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCCAATTTTACAATTAAAATTTTTACTTTTTGGTGGGAGGAGAGA  1183

seq1  ATTC  1202
      ||||
seq2  ATTC  1187

seq1: chr2_46499700_46500738
seq2: B6Ng01-041K08.g_73_1101

seq1  GAATTCACACACACACACAAATGTGTAAGAAGGAAAGAGAAGACAAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACACACACACAAATGTGTAAGAAGGAAAGAGAAGACAAAGCT  50

seq1  ACAACAAAAGATAAAAAGAAAAATAAGGCTATATATTATTTAAACATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAAGATAAAAAGAAAAATAAGGCTATATATTATTTAAACATTTT  100

seq1  GGGTCATGGTATAGCATATTTAATTTCAAACAACTCATAAAGAGTATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATGGTATAGCATATTTAATTTCAAACAACTCATAAAGAGTATGTT  150

seq1  CTCTTAGCAGAATGATTATAATTAAATCCATTAACAATAGGAACATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGCAGAATGATTATAATTAAATCCATTAACAATAGGAACATATTT  200

seq1  CTATCTATGCCAGAATAGCCCAAACTGGCAACAAAGTAAACCAAGTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATGCCAGAATAGCCCAAACTGGCAACAAAGTAAACCAAGTGCCT  250

seq1  TTCCACATTTTAAAATAGTTCAGTCAAGTTTTCAAATTTTAGAATTAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATTTTAAAATAGTTCAGTCAAGTTTTCAAATTTTAGAATTAGTT  300

seq1  GTTCTACCCAAAGGTGGGGCATGGGTTATGGTTCTTAAGTTCAGAGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACCCAAAGGTGGGGCATGGGTTATGGTTCTTAAGTTCAGAGTGAG  350

seq1  GTATGACCAGTAGGTAGTACCAAGTCTTATGTCTGAATGTCATTTTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGACCAGTAGGTAGTACCAAGTCTTATGTCTGAATGTCATTTTCAGT  400

seq1  CCTAACTAAGTTCTTCTCTTCCATTGTGTCTTTAATTTTTTGTTTGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTAAGTTCTTCTCTTCCATTGTGTCTTTAATTTTTTGTTTGAGAT  450

seq1  AGTGACAAATCCATCATGAATTCCTCTTTTCCTTCCTACAAATTCATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAAATCCATCATGAATTCCTCTTTTCCTTCCTACAAATTCATAGA  500

seq1  GGAGTCATTTTTTTCACAGATTTTATGAACACCAGCCTAAACACCTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCATTTTTTTCACAGATTTTATGAACACCAGCCTAAACACCTCTTT  550

seq1  GTCACCTTTTTCATTATAAAAGTGACTCTTACCTTTTAATTTAAAGCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTTTTTCATTATAAAAGTGACTCTTACCTTTTAATTTAAAGCAAG  600

seq1  TGGTTCATGTGATATCTGTGACCCATCTGTACAGCCAGTTTTGATGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCATGTGATATCTGTGACCCATCTGTACAGCCAGTTTTGATGCCTT  650

seq1  TTGCTTGGGAGCATCACAATATCATATAAATGCCACTTGAAAACAACCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGGGAGCATCACAATATCATATAAATGCCACTTGAAAACAACCCT  700

seq1  TGTGATAAATGCAGCAGTTGATGGATAGCTAATGTAGTCATTACATGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAAATGCAGCAGTTGATGGATAGCTAATGTAGTCATTACATGGAA  750

seq1  AATATTCAGACAGTCTACTTGAAATCATTGGGCACAACTGACTCATAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCAGACAGTCTACTTGAAATCATTGGGCACAACTGACTCATAGGT  800

seq1  AACAGACAGCAAAGAAAACAAGATCATTGTCCTGCAATGGGCACTGAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACAGCAAAGAAAACAAGATCATTGTCCTGCAATGGGCACTGAAAC  850

seq1  TCACATGGATCTAGGGAGGCTTTTAGTGACAAGGAAAAAAGAAAAATATA  900
      |||||||||||| ||||||||||||||||||||||||||   ||||||||
seq2  TCACATGGATCT-GGGAGGCTTTTAGTGACAAGGAAAAA--GAAAATATA  897

seq1  AAATAACTTCTGTTTGTGTGATTTCACTGTATTACACAGCTGACAACACA  950
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  AAATAAC-TCTGTTTGTGTGATTTCACTGTATTACACAGCTGAC-ACACA  945

seq1  -TCTGTGGTCAAGGTGGGAATGGTGATTTACA-TGAGTCAGGGTGGCACA  998
       ||||||||| ||||||||||||||| ||||| ||||| ||||| |||||
seq2  TTCTGTGGTC-AGGTGGGAATGGTGAATTACATTGAGT-AGGGT-GCACA  992

seq1  GATAGGAAGTAGGAACTTTGAAAAATGAAAATATGATTGAA  1039
      |||| |||||||| ||||   ||| ||||||||||||||||
seq2  GATA-GAAGTAGG-ACTT--GAAATTGAAAATATGATTGAA  1029