BAC Information

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BAC

Clone NameB6Ng01-041N03
Chromosome2 (Build37)
Map Location 147,036,136 - 147,168,989
singlet/doubletdoublet
Overlap geneLOC668919, LOC668920
Upstream geneInsm1, A230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816
Downstream genePax1, LOC640914, A530006G24Rik, LOC100043820, Foxa2, LOC383752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041N03.bB6Ng01-041N03.g
ACCDH868370DH868371
length1,034902
definitionDH868370|Mus musculus domesticus DNA, BAC clone: B6Ng01-041N03, 5' end.DH868371|Mus musculus domesticus DNA, BAC clone: B6Ng01-041N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,167,941 - 147,168,989)(147,036,136 - 147,037,033)
sequence
gaattctgggattataggcatgtgctactatcctcagtcttccttgccga
atgtcttagacaagcccaattttatagtcaactcctgagggacagaagtg
acgtatgaaatgctagaagctgacagaagccacagatacaaagcccatag
gtagcgaacagagatgaaaagggaaaagacagttgcctctgagaacagag
tacaccctagcagacattctctatcccaccagttgtttggaggattcata
caaacccaagtgggaaaaatgccaacttggatgcttagcccattcaagga
ctagtcacaacaggtataggtcactcaaggttgggtatgattacagaaga
aagtatagcaactgcatccctgtgtcataggtcacactctgggaccatct
tgctccagactgacaaacttttccctggccttaactgtaaaagctgaagc
tggctgaagccttctctaggccaggcatgcatgaaggatttaaacagacc
gtcttgcttgagtactcataataccctcaaaggtaggctgacatggaatg
acccccctccccccccccccaaagcacagatggggagatggcatatgaat
gttaactcaaggctgctgagcgatgatttgaaccgggcatctggctccag
tgtacacatctattcctagtgtaggtcaggagatgaaaacagtgggcaga
ggctcctggtactcagtccaggaactttcagccctcctctaaggtttttt
aagcaatgcacttcgtttcccagacctaatttctgcaaagttaatcaagc
tcagaatgcctcttctcccaaggctggcaggaggcacttgaagtgctctc
tagtgcccccaccgggaggtagctggtaagaaacaagttaagaattctct
ttgaaatttggtggagactccttccaggaggagttattagtgaagacctg
atataacttaaattttcagcatccaccttatttttttcttggtgctgggg
actaaatcaggccatgtataactaagcaccactg
gaattctctggctcttttatccatgtgcagactaagccattgtcagccct
gaactcagagattttagctgaaactggtgcttgttgcttgtttcaggcat
ggacacatagatgtgttgtaaaatgggacatggtactcagcagtaccagg
caggagggttggggacatagatcagttggcaagacctgaattcagatctc
cagcacccatgtaagctggtcatgatggtatgtgcccatgtaagctggtc
atgatggtgcccataattccatggctagaacaaagcttgtaggttagcca
gcctggccaaacagttaagctctgggttcagtgacaactgactcaataca
cctgatgtcaacttctgatacacacacacacacacacacacacacacaca
cacacacacacacacacacacacacgagagagagagagagagagagacag
agagagacagagagagacagagagagacagagagagagacacacagagag
agacagagagagacagggagagagagagagacagagagagacagagagac
agagagagagacagagagacagagacagagagaggcagagacagagagag
acagacagagagacagacagacagagagagagacagacagagaggggggg
gggggcaggaaacctcattgttctcaaactttctagagggcactgctcag
gacaccaaatgtgagctgggacactgacctcttgcatcgagcagagcaga
gcccagagcatacatatctagcggcacagatgggtcccggactgcagttg
ccttacaatctagatggcatacaccattgtcggtgatggtctgtggacta
ctaccgttctctcaggggactgcacccctaagaaaggacttccccatctt
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_147167941_147168989
seq2: B6Ng01-041N03.b_46_1079 (reverse)

seq1  CAGTGTGTGCTTAGTATATACATGGCCTGGATATAGTCCCCAGCACAAGA  50
      ||||| ||||||||| |||||||||||| ||| ||||||||||||| |  
seq2  CAGTG-GTGCTTAGT-TATACATGGCCT-GATTTAGTCCCCAGCACCAAG  47

seq1  AAAAAAATAAAGGGTGGATTGCTGAAAATTTTAAGTTATATCAGGTCTTC  100
      ||||||||||  |||||| ||||||||| |||||||||||||||||||||
seq2  AAAAAAATAA--GGTGGA-TGCTGAAAA-TTTAAGTTATATCAGGTCTTC  93

seq1  ACTTAATAAACTACCTACCTGGAAGGGAGTCTCCACCAAATTTCAAAAGA  150
      || |||| |||| ||| ||||||| ||||||||||||||||||| |||||
seq2  AC-TAAT-AACT-CCT-CCTGGAA-GGAGTCTCCACCAAATTTC-AAAGA  137

seq1  GAATTCTTAACCTTGTTTCTTACCAGCTACCTCCCGGTGGGGGCACTAGA  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAA-CTTGTTTCTTACCAGCTACCTCCCGGTGGGGGCACTAGA  186

seq1  GAGCACTTCAAGTGCCTCCTGCCAGCCTTTGGGAGAAGAGGCATTCTGAG  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGCACTTCAAGTGCCTCCTGCCAGCC-TTGGGAGAAGAGGCATTCTGAG  235

seq1  CTTGATTAACTTTGCAGAAATTAGGTCTGGGAAACGAAGTGCATTGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTGATTAACTTTGCAGAAATTAGGTCTGGGAAACGAAGTGCATTGCTTA  285

seq1  AAAAACCTTAGAGGAGGGCTGAAAGTTCCTGGACTGAGTACCAGGAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCTTAGAGGAGGGCTGAAAGTTCCTGGACTGAGTACCAGGAGCCT  335

seq1  CTGCCCACTGTTTTCATCTCCTGACCTACACTAGGAATAGATGTGTACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACTGTTTTCATCTCCTGACCTACACTAGGAATAGATGTGTACAC  385

seq1  TGGAGCCAGATGCCCGGTTCAAATCCTCGCTCAGCAGCCTTGAGTTAACA  450
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGGAGCCAGATGCCCGGTTCAAATCATCGCTCAGCAGCCTTGAGTTAACA  435

seq1  TTCATATGCCATCTCCCCATCTGTGCTTTGGGGGGGGGGGGAGGGGGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGCCATCTCCCCATCTGTGCTTTGGGGGGGGGGGGAGGGGGGTC  485

seq1  ATTCCATGTCAGCCTACCTTTGAGGGTATTATGAGTACTCAAGCAAGACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGTCAGCCTACCTTTGAGGGTATTATGAGTACTCAAGCAAGACG  535

seq1  GTCTGTTTAAATCCTTCATGCATGCCTGGCCTAGAGAAGGCTTCAGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTAAATCCTTCATGCATGCCTGGCCTAGAGAAGGCTTCAGCCAG  585

seq1  CTTCAGCTTTTACAGTTAAGGCCAGGGAAAAGTTTGTCAGTCTGGAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTTTTACAGTTAAGGCCAGGGAAAAGTTTGTCAGTCTGGAGCAA  635

seq1  GATGGTCCCAGAGTGTGACCTATGACACAGGGATGCAGTTGCTATACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCCCAGAGTGTGACCTATGACACAGGGATGCAGTTGCTATACTTT  685

seq1  CTTCTGTAATCATACCCAACCTTGAGTGACCTATACCTGTTGTGACTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTAATCATACCCAACCTTGAGTGACCTATACCTGTTGTGACTAGT  735

seq1  CCTTGAATGGGCTAAGCATCCAAGTTGGCATTTTTCCCACTTGGGTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAATGGGCTAAGCATCCAAGTTGGCATTTTTCCCACTTGGGTTTGT  785

seq1  ATGAATCCTCCAAACAACTGGTGGGATAGAGAATGTCTGCTAGGGTGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCCTCCAAACAACTGGTGGGATAGAGAATGTCTGCTAGGGTGTAC  835

seq1  TCTGTTCTCAGAGGCAACTGTCTTTTCCCTTTTCATCTCTGTTCGCTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTCAGAGGCAACTGTCTTTTCCCTTTTCATCTCTGTTCGCTACC  885

seq1  TATGGGCTTTGTATCTGTGGCTTCTGTCAGCTTCTAGCATTTCATACGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGCTTTGTATCTGTGGCTTCTGTCAGCTTCTAGCATTTCATACGTC  935

seq1  ACTTCTGTCCCTCAGGAGTTGACTATAAAATTGGGCTTGTCTAAGACATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTCCCTCAGGAGTTGACTATAAAATTGGGCTTGTCTAAGACATT  985

seq1  CGGCAAGGAAGACTGAGGATAGTAGCACATGCCTATAATCCCAGAATTC  1049
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAAGGAAGACTGAGGATAGTAGCACATGCCTATAATCCCAGAATTC  1034

seq1: chr2_147036136_147037033
seq2: B6Ng01-041N03.g_69_970

seq1  GAATTCTCTGGCTCTTTTATCCATGTGCAGACTAAGCCATTGTCAGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGCTCTTTTATCCATGTGCAGACTAAGCCATTGTCAGCCCT  50

seq1  GAACTCAGAGATTTTAGCTGAAACTGGTGCTTGTTGCTTGTTTCAGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAGATTTTAGCTGAAACTGGTGCTTGTTGCTTGTTTCAGGCAT  100

seq1  GGACACATAGATGTGTTGTAAAATGGGACATGGTACTCAGCAGTACCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACATAGATGTGTTGTAAAATGGGACATGGTACTCAGCAGTACCAGG  150

seq1  CAGGAGGGTTGGGGACATAGATCAGTTGGCAAGACCTGAATTCAGATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGGTTGGGGACATAGATCAGTTGGCAAGACCTGAATTCAGATCTC  200

seq1  CAGCACCCATGTAAGCTGGTCATGATGGTATGTGCCCATGTAAGCTGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCCATGTAAGCTGGTCATGATGGTATGTGCCCATGTAAGCTGGTC  250

seq1  ATGATGGTGCCCATAATTCCATGGCTAGAACAAAGCTTGTAGGTTAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGTGCCCATAATTCCATGGCTAGAACAAAGCTTGTAGGTTAGCCA  300

seq1  GCCTGGCCAAACAGTTAAGCTCTGGGTTCAGTGACAACTGACTCAATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCCAAACAGTTAAGCTCTGGGTTCAGTGACAACTGACTCAATACA  350

seq1  CCTGATGTCAACTTCTGATACACACACACACACACACACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGTCAACTTCTGATACACACACACACACACACACACACACACACA  400

seq1  CACACACACACACACACACACACACGAGAGAGAGAGAGAGAGAGAGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACGAGAGAGAGAGAGAGAGAGAGACAG  450

seq1  AGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGAGACACACAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGAGACACACAGAGAG  500

seq1  AGACAGAGAGAGACAGGGAGAGAGAGAGAGACAGAGAGAGACAGAGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGAGAGACAGGGAGAGAGAGAGAGACAGAGAGAGACAGAGAGAC  550

seq1  AGAGAGAGAGACAGAGAGACAGAGACAGAGAGAGGCAGAGACAGAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGACAGAGAGACAGAGACAGAGAGAGGCAGAGACAGAGAGAG  600

seq1  ACAGACAGAGAGACAGACAGACAGAGAGAGAGACAGACAGAGA--GGGGG  648
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  ACAGACAGAGAGACAGACAGACAGAGAGAGAGACAGACAGAGAGGGGGGG  650

seq1  GGGGGCAGGAAACCTCATTGTTCTCAAAC-TTCTAGAGGGCACTGCTCAG  697
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGGGGCAGGAAACCTCATTGTTCTCAAACTTTCTAGAGGGCACTGCTCAG  700

seq1  GACACCAAATGTGAGCTGGGACACTGACCTCTTGCATCGAGCAGAGCAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAAATGTGAGCTGGGACACTGACCTCTTGCATCGAGCAGAGCAGA  750

seq1  GCCCAGAGCATACACATCTAGCGGCACAGATGGTGCCCGGACTGCTGTTG  797
      |||||||||||||| ||||||||||||||||||  |||||||||| ||||
seq2  GCCCAGAGCATACATATCTAGCGGCACAGATGGGTCCCGGACTGCAGTTG  800

seq1  CCTTACAATCTAGATGGCATACACCATTGTCAGGGATGGCCTGTGGACTA  847
      ||||||||||||||||||||||||||||||| | ||||| ||||||||||
seq2  CCTTACAATCTAGATGGCATACACCATTGTCGGTGATGGTCTGTGGACTA  850

seq1  CTACAGTTC-CTCAGGGGACTGCACCCCTAAGAAAGTACTTCACCATCTT  896
      |||| |||| |||||||||||||||||||||||||| ||||| |||||||
seq2  CTACCGTTCTCTCAGGGGACTGCACCCCTAAGAAAGGACTTCCCCATCTT  900

seq1  GA  898
      ||
seq2  GA  902