BAC Information

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BAC

Clone NameB6Ng01-042A07
Chromosome2 (Build37)X (Build37)
Map Location 142,776,636 - 142,777,69825,906,688 - 25,907,714
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042A07.bB6Ng01-042A07.g
ACCDH868513DH868514
length9381,009
definitionDH868513|Mus musculus domesticus DNA, BAC clone: B6Ng01-042A07, 5' end.DH868514|Mus musculus domesticus DNA, BAC clone: B6Ng01-042A07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,636 - 142,777,698)(25,906,688 - 25,907,714)
sequence
gaattctattttcagttctgagcctcatttttgatggggttatttgattt
tatggagtctaccttcttgagttctttaaatgtattagatattagtcccc
tatccgatttgggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgaatgtgtcttttgccttgcagaagctcttcaatttcat
gaggttccatttatcgattctcaatcttacagcacaagccattgttgttc
tattcaggaatttttcccctgtacccataactttgaggctttcccctact
ttctcctctataagtttcagtgtctctggatttatgtggagttccttaat
ccacttagatttgaccttagtacaaggagataggaatagatcaattcgca
ttcttctacatgataacagccagttgtgccagcaccatttgttgaaaatg
ctgtctttgttccactggatggttttagctctcttatcaaagatcaagtg
aacataggtgtgtgggttcatctctgggtcttcaattctgttccattggt
ctacttgtctgtcactataccagtactatgcagtttttatcccatttgct
ctgtagtacagctttaggtcgggcatggtgatgccaccagaggttctttt
atccttgagaagagtttttgctatcctaggtttttgttattccagatgaa
tctgccgattgccctttctaattcgttgaagaattaagttggaattttga
tggggattgcattgaatctgtagattgcttttggcaagatagccattttt
actatattgatcctgccattccatgagcaagggagatctttctatcttct
gagatcttctttaatttctttcttcagagacatgaagttcttatcataca
gatctttcagttccttagttaagagtcacaccaaggta
gaattctttaatataacccttattacttttttttaattttattttatggg
tatgtttgttttgcttgattgtgtgtatgtacacagcttgtatgtcttgt
acctgatgaggccagatgaaggcattgaattccctggaactggagttata
ggttttgagcaaccttgtggatgctgggattcgaatctcagatctctgga
agggaaccagtgctcttaactgatgaatcatctcaccaatcccctcactg
atttttataaaatgaattatgtaactgaaagtgaaagacaaatttactaa
ccagtgagggaatgaaactcagatcccaaagaatctattttaaattatat
gtaattgaatgttgcatgagctttcttagaggataataatttgtctttga
tatatagtctcactatgtatgtcaggctggctggaaatttcctatgtaac
ctatgttgtcctttacactggaaatctcctgctaagcttcctagactagg
atcatagacccaaaacgtcttaaatggcttaagaaacaatgctcttaata
cctatttttcagacatatttgtgtattagtgttttgcttacaggtacata
tgtgcaccacatatgtgcctgttgcccatacatataagatgattatttca
gacaccttggacctggagtcacataaagagaaaacacatggaaacttata
tcaaagattctttcaaaaaaaatgcaaccagaaattagaatgagtttggc
aaacgaacaaatgggagaggtagagtgttagttttgtagggtcacatttg
tatcattttaaaaattatatgtggctgaagttgaaaaaaaaaacattact
gagctttttagtaaaaatgtgtgtctttgattttgtctaagcatttaacc
ctatacttcatgccttaaggaactaatctaatcttagaatctgtgaaaat
ttttattttctcttagtactgtaatgagattttaaaattgatttacttca
tgtggaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776636_142777698
seq2: B6Ng01-042A07.b_42_643 (reverse)

seq1  AGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGT  50
      ||||||| || |||||||||||||| |||||||||||| |||||||||||
seq2  AGAGCAAATGGGATAAAAACTGCATAGTACTGGTATAGTGACAGACAAGT  50

seq1  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  100
      |||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  AGACCAATGGAACAGAATTGAAGACCCAGAGATGAACCCACACACCTATG  100

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGAC  150
       |||||||||||| || ||| ||||||||||||||||| |||| ||||||
seq2  TTCACTTGATCTTTGATAAGAGAGCTAAAACCATCCAGTGGAACAAAGAC  150

seq1  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  200
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  AGCATTTTCAACAAATGGTGCTGGCACAACTGGCTGTTATCATGTAGAAG  200

seq1  AATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  250
      |||| |||| |||| || | ||||||||||||||||||||||||||||||
seq2  AATGCGAATTGATCTATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGT  250

seq1  GGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  300
      |||| |||||||| |||||||| |||||||||||||||||||||||||||
seq2  GGATTAAGGAACTCCACATAAATCCAGAGACACTGAAACTTATAGAGGAG  300

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAA  350
      ||||| ||| |||||||  ||| |||||| |||||||| |||||||||||
seq2  AAAGTAGGGGAAAGCCTCAAAGTTATGGGTACAGGGGAAAAATTCCTGAA  350

seq1  CAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACC  400
       |||||| ||||||||||||||||||||| |||||| || |||||| |||
seq2  TAGAACAACAATGGCTTGTGCTGTAAGATTGAGAATCGATAAATGGAACC  400

seq1  TAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  450
      | |||||| |  | || ||||||||||||||||||||  |||||||||||
seq2  TCATGAAATTGAAGAGCTTCTGCAAGGCAAAAGACACATTCAATAAGACA  450

seq1  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  500
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCCAAATCGGA  500

seq1  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCA  550
      ||||||||||||||| || | || |||||||||||||||||| |||| ||
seq2  TAGGGGACTAATATCTAATACATTTAAAGAACTCAAGAAGGTAGACTCCA  550

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTG  600
       ||||||||||||||||| | ||||||| |||||| |         | ||
seq2  TAAAATCAAATAACCCCA-TCAAAAATGAGGCTCAGA---------ACTG  590

seq1  GAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT  650
           || | || |||                                  
seq2  -----AAAATAGAATTC---------------------------------  602

seq1  CATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTC  700
                                                        
seq2  --------------------------------------------------  602

seq1  AAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACT  750
                                                        
seq2  --------------------------------------------------  602

seq1  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAA  800
                                                        
seq2  --------------------------------------------------  602

seq1  AATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  850
                                                        
seq2  --------------------------------------------------  602

seq1  AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGT  900
                                                        
seq2  --------------------------------------------------  602

seq1  CTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATC  950
                                                        
seq2  --------------------------------------------------  602

seq1  CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAG  1000
                                                        
seq2  --------------------------------------------------  602

seq1  GTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACT  1050
                                                        
seq2  --------------------------------------------------  602

seq1  GAACAAAGAATTC  1063
                   
seq2  -------------  602

seq1: chrX_25906688_25907714
seq2: B6Ng01-042A07.g_68_1076 (reverse)

seq1  GTTTCCACAATGAATGTAAATCAAATTTTAAAATCTCATTAACAGGTACT  50
      |||||||| ||||| ||||||| ||||||||||||||||| ||| |||||
seq2  GTTTCCAC-ATGAA-GTAAATC-AATTTTAAAATCTCATT-ACA-GTACT  45

seq1  TAAAGTAGAAAATAAAAATTTTCACAGATTTCTAAGAATTAGATTTAGTT  100
        ||| |||||||||||||||||||||| ||||||| |||||| |||| |
seq2  --AAG-AGAAAATAAAAATTTTCACAGA-TTCTAAG-ATTAGA-TTAG-T  88

seq1  TCCTTGAAGGCATGAAGTTATAGGGTTAACTGCTTAGACAAAATCAAAGA  150
      ||||| ||||||||||| ||||||||||| ||||||||||||||||||||
seq2  TCCTT-AAGGCATGAAG-TATAGGGTTAAATGCTTAGACAAAATCAAAGA  136

seq1  CAAACAATTTTACT-AAAAGCTCAGTAATGTTTTTTTTTTTTAACTTCAG  199
      || ||| ||||||| ||||||||||||||| |||||||||| ||||||||
seq2  CACACATTTTTACTAAAAAGCTCAGTAATG-TTTTTTTTTTCAACTTCAG  185

seq1  CCACATATAATTTTTAAAATGATACAAATGTGACCCTACAAAACTAACAA  249
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCACATATAATTTTTAAAATGATACAAATGTGACCCTACAAAACTAAC-A  234

seq1  CTCTACCTCTCCCATTTGTTCGTTTGCCAAAGTCATTCTAATTTCTGGTT  299
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCTACCTCTCCCATTTGTTCGTTTGCCAAACTCATTCTAATTTCTGGTT  284

seq1  GCA--TTTTTTGAAAGAATCTTTGATATAAGTTTCCATGTGTTTTCTCTT  347
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTTTTGAAAGAATCTTTGATATAAGTTTCCATGTGTTTTCTCTT  334

seq1  TATGTGACTCCAGGTCCAAGGTGTCTGAAATAATCATCTTATATGTATGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGACTCCAGGTCCAAGGTGTCTGAAATAATCATCTTATATGTATGG  384

seq1  GCAACAGGCACATATGTGGTGCACATATATACCTGTAAGCAAAACACTAA  447
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCAACAGGCACATATGTGGTGCACATATGTACCTGTAAGCAAAACACTAA  434

seq1  TACACAAATATGTCTGAAAAATAGGTATTAAGAGCATTGTTTCTTAAGCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAATATGTCTGAAAAATAGGTATTAAGAGCATTGTTTCTTAAGCC  484

seq1  ATTTAAGATGTTTTGGGTCTATGATCCTAGTCTAGGAAGCTTAGCAGGAG  547
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGACGTTTTGGGTCTATGATCCTAGTCTAGGAAGCTTAGCAGGAG  534

seq1  ATTTCCAGTGTAAAGGACAACATAGGTTACATAGGAAAATTCCAGCCAGC  597
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTTCCAGTGTAAAGGACAACATAGGTTACATAGGAAATTTCCAGCCAGC  584

seq1  CTGACATACATAGTGAGACTATATATCAAAGACAAATTATTATCCTCTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATACATAGTGAGACTATATATCAAAGACAAATTATTATCCTCTAA  634

seq1  GAAAGCTCATGCAACATTCAATTACATATAATTTAAAATAGATTCTTTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTCATGCAACATTCAATTACATATAATTTAAAATAGATTCTTTGG  684

seq1  GATCTGAGTTTCATTCCCTCACTGGTTAGTAAATTTGTCTTTCACTTTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAGTTTCATTCCCTCACTGGTTAGTAAATTTGTCTTTCACTTTCA  734

seq1  GTTACATAATTCATTTTATAAAAATCAGTGAGGGGATTGGTGAGATGATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATAATTCATTTTATAAAAATCAGTGAGGGGATTGGTGAGATGATT  784

seq1  CATCAGTTAAGAGCACTGGTTCCGTTCCAGAGATCTGAGAATGGATTCCC  847
      ||||||||||||||||||||||| |||||||||||||||| | || ||||
seq2  CATCAGTTAAGAGCACTGGTTCCCTTCCAGAGATCTGAGATTCGAATCCC  834

seq1  AGCATCCACAAGGTTGCTCACAACCTATAACTCCAGTTCCAGGGAATTCA  897
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGCATCCACAAGGTTGCTCAAAACCTATAACTCCAGTTCCAGGGAATTCA  884

seq1  ATGCCTTCATCTGGCCTCCTCAGGTACAAGACATACAAGCTGTGTACATA  947
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGCCTTCATCTGGCCTCATCAGGTACAAGACATACAAGCTGTGTACATA  934

seq1  CACACAATCAAGCAAAACAAACATACCCATAAAATAAAATTAAAAAAAAA  997
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  CACACAATCAAGCAAAACAAACATACCCATAAAATAAAATTAAAAAA---  981

seq1  ATAAGTAATAAGGGTTATATTAAAGAATTC  1027
        ||||||||||||||||||||||||||||
seq2  --AAGTAATAAGGGTTATATTAAAGAATTC  1009