BAC Information

Click to search

BAC

Clone NameB6Ng01-042J05
Chromosome2 (Build37)
Map Location 137,282,640 - 137,400,346
singlet/doubletdoublet
Overlap genenone
Upstream geneBC034902, Ankrd5, Snap25, LOC668911, Mkks, 2210009G21Rik, Jag1
Downstream geneBtbd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042J05.bB6Ng01-042J05.g
ACCDH868910DH868911
length1,0791,158
definitionDH868910|Mus musculus domesticus DNA, BAC clone: B6Ng01-042J05, 5' end.DH868911|Mus musculus domesticus DNA, BAC clone: B6Ng01-042J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,399,256 - 137,400,346)(137,282,640 - 137,283,827)
sequence
gaattcattgaggaatccagaaaactaaaggcactttaaaattgaagaca
tactgtgtatgaaaacagatgtgtgaaaacctataaagtaaccagttcac
caaatactacttgcctactttctgtgtgcccagaccctacctgttctaag
ttggggattcaaaagtaagtagaggagaaaataaagattcctctgaagag
cttctgtttctgcagggtaggcctgtgattaaataagaaattaaaatgag
gtaaagtattatgaacattatgagaaatagtaaagattcctcagggtatg
agagtaagaggcaagtgtatcctgggggaagaagttctatctaaaccaaa
gcccagggtgaggtagatatgatttatacaagcaataaagaaagaacact
cagacaaaatgatcagtatgtataaaagtataaaagcatgcaggcagaaa
agagagagagagagagagagagagagagagagagagagagagagagagag
agagaccttgaagacattcaccttgaaatggcaaagaatgaaagaggaag
aacatgggctttggggaggaaatgtccatgaagtaccatgatggtcagtg
atgctgaacaatggataatcgttcaacttcatccccaaagcagcagcagc
agttaatcagttttaagcagctgagcgaaatggatatcttctgtaatttt
caggggacagtggtagtgataacattttattatatagtatcaaaattatg
tgatcacactaattgagaaactcctgtcttcccggtgtaaagaaattggg
gagcacatgaaactatatgaggcagcgttgaaagtattatgcctagttag
atgtaggttatgagcagaatgcagaatcctggctggcagcatgcacgtca
acctgagtcatcagtggatgattgttccggcacttacagaaagactaaag
ggacacagagaagagacaggccaaagtgaaaaatgagtcccagtctcttt
gtgcatattacttttaaaaacacattgacatttaagttaagtattgagtg
catagtttgaaatatggggaggatactat
gaattctcttggtggattgtggggaagggcttcaagtccttgctacagat
ctgctaactctttccagaggtcacagttgcttcctaaagaactagttgct
ccaacaatggtataccgtatctgtacattcagaatggatcttcctgacac
ttaagaaacaagggcatcataaactttatatattatgtgataggtatgta
taatgcatgcacaccccaaacgtcatacctagctaacttgaatacaacag
ttacataagcctatagttataggctatagcttatagtaaagcttgattgt
tagcctattgtattctatagtgctgaatatcttgtgtaatttattgtcta
ctgtactgagagtataaagacagagagagcagttgtatcagcattctttc
ccactatcatgcgggtgaaagtgccacagtgtgttggagactgtaattca
ttctttgcatcaagaagggctaaaggatgaaagggttaatgttaaaggaa
acaaacagcattttcctcttttacaatggtctgaaaagtgtagtcctaga
gtagcaatatcagcattgttaagaccttctctcaggggctaggcagatgg
ctaagtgggtaagggcattgacattgcaaacattagggattcagtttgaa
tctccagcaacctcatacaaaacaatgcatggctgtatgtccctgtaacc
ccagcaaccgtatatcccacgagtttgctggtcagccagccaagctgaaa
tagtgagcctgtctcagttagaatcttaccaataagacagaaagctacag
aggaagacaccaacattgtgctctggcctctctgtagcttcataagccac
atacatttgcagactttcgtgcatcacacaaatacagcatggcgtgtgca
cacatataaacacagccatgcacacatgaacatatatatatatacacaca
cagctataaaattttctttcagactcaaagctattgtgaactggtccaga
atttgtgtttaataagccttcagtagaatgaaacaagctacgggacgact
catctgtattacttttacagcttaaaattaaaccgtacatggaatataca
ggtattttttcatgcaatgctttccctctgcttttttggtggcgcgcatt
gtactgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_137399256_137400346
seq2: B6Ng01-042J05.b_44_1122 (reverse)

seq1  ATAGTATCCTCCCCATATTTCAAACTATGCACTCAAATACTTTTACTTAA  50
      |||||||||||||||||||||||||||||||||| ||||| || ||||||
seq2  ATAGTATCCTCCCCATATTTCAAACTATGCACTC-AATAC-TTAACTTAA  48

seq1  ATGTTCAATGTGTTTTTAAAAGGTAATTATGCCACAAAGAGACTGGGACT  100
      ||| ||||||||||||||||| |||| |||| ||||||||||||||||| 
seq2  ATG-TCAATGTGTTTTTAAAA-GTAA-TATG-CACAAAGAGACTGGGAC-  93

seq1  TCATTTTTTCACTTTGGCCTGTCTCCTTCTCTGTGTCCCTTTAGTCTTTC  150
      ||| |||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCA-TTTTTCACTTTGGCCTGTCT-CTTCTCTGTGTCCCTTTAGTCTTTC  141

seq1  TGTAAGTGCCGGAACAATCATCCACCTGATGACTCAGGTTGACGTGCATG  200
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTAAGTGCCGGAACAATCATCCA-CTGATGACTCAGGTTGACGTGCATG  190

seq1  CTGCCAGCCAGGATTCTGCATTCTGCTCATAACCTACATCTAACTAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGCCAGGATTCTGCATTCTGCTCATAACCTACATCTAACTAGGCA  240

seq1  TAATACTTTCAACGCTGCCTCATATAGTTTCATGTGCTCCCCAATTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTTTCAACGCTGCCTCATATAGTTTCATGTGCTCCCCAATTTCTT  290

seq1  TACACCGGGAAGACAGGAGTTTCTCAATTAGTGTGATCACATAATTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCGGGAAGACAGGAGTTTCTCAATTAGTGTGATCACATAATTTTGA  340

seq1  TACTATATAATAAAATGTTATCACTACCACTGTCCCCTGAAAATTACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATATAATAAAATGTTATCACTACCACTGTCCCCTGAAAATTACAGA  390

seq1  AGATATCCATTTCGCTCAGCTGCTTAAAACTGATTAACTGCTGCTGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCCATTTCGCTCAGCTGCTTAAAACTGATTAACTGCTGCTGCTGC  440

seq1  TTTGGGGATGAAGTTGAACGATTATCCATTGTTCAGCATCACTGACCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGATGAAGTTGAACGATTATCCATTGTTCAGCATCACTGACCATC  490

seq1  ATGGTACTTCATGGACATTTCCTCCCCAAAGCCCATGTTCTTCCTCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACTTCATGGACATTTCCTCCCCAAAGCCCATGTTCTTCCTCTTTC  540

seq1  ATTCTTTGCCATTTCAAGGTGAATGTCTTCAAGGTCTCTCTCTCTCTCTC  600
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  ATTCTTTGCCATTTCAAGGTGAATGTCTTCAAGG--TCTCTCTCTCTCTC  588

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTGCCT  638

seq1  GCATGCTTTTATACTTTTATACATACTGATCATTTTGTCTGAGTGTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTTTTATACTTTTATACATACTGATCATTTTGTCTGAGTGTTCTT  688

seq1  TCTTTATTGCTTGTATAAATCATATCTACCTCACCCTGGGCTTTGGTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTGCTTGTATAAATCATATCTACCTCACCCTGGGCTTTGGTTTA  738

seq1  GATAGAACTTCTTCCCCCAGGATACACTTGCCTCTTACTCTCATACCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAACTTCTTCCCCCAGGATACACTTGCCTCTTACTCTCATACCCTG  788

seq1  AGGAATCTTTACTATTTCTCATAATGTTCATAATACTTTACCTCATTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTTTACTATTTCTCATAATGTTCATAATACTTTACCTCATTTTA  838

seq1  ATTTCTTATTTAATCACAGGCCTACCCTGCAGAAACAGAAGCTCTTCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTATTTAATCACAGGCCTACCCTGCAGAAACAGAAGCTCTTCAGA  888

seq1  GGAATCTTTATTTTCTCCTCTACTTACTTTTGAATCCCCAACTTAGAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTTTATTTTCTCCTCTACTTACTTTTGAATCCCCAACTTAGAACA  938

seq1  GGTAGGGTCTGGGCACACAGAAAGTAGGCAAGTAGTATTTGGTGAACTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGTCTGGGCACACAGAAAGTAGGCAAGTAGTATTTGGTGAACTGG  988

seq1  TTACTTTATAGGTTTTCACACATCTGTTTTCATACACAGTATGTCTTCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTATAGGTTTTCACACATCTGTTTTCATACACAGTATGTCTTCAA  1038

seq1  TTTTAAAGTGCCTTTAGTTTTCTGGATTCCTCAATGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGTGCCTTTAGTTTTCTGGATTCCTCAATGAATTC  1079

seq1: chr2_137282640_137283827
seq2: B6Ng01-042J05.g_66_1223

seq1  GAATTCTCTTGGTGGATTGTGGGGAAGGGCTTCAAGTCCTTGCTACAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGGTGGATTGTGGGGAAGGGCTTCAAGTCCTTGCTACAGAT  50

seq1  CTGCTAACTCTTTCCAGAGGTCACAGTTGCTTCCTAAAGAACTAGTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAACTCTTTCCAGAGGTCACAGTTGCTTCCTAAAGAACTAGTTGCT  100

seq1  CCAACAATGGTATACCGTATCTGTACATTCAGAATGGATCTTCCTGACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAATGGTATACCGTATCTGTACATTCAGAATGGATCTTCCTGACAC  150

seq1  TTAAGAAACAAGGGCATCATAAACTTTATATATTATGTGATAGGTATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAACAAGGGCATCATAAACTTTATATATTATGTGATAGGTATGTA  200

seq1  TAATGCATGCACACCCCAAACGTCATACCTAGCTAACTTGAATACAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCATGCACACCCCAAACGTCATACCTAGCTAACTTGAATACAACAG  250

seq1  TTACATAAGCCTATAGTTATAGGCTATAGCTTATAGTAAAGCTTGATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAAGCCTATAGTTATAGGCTATAGCTTATAGTAAAGCTTGATTGT  300

seq1  TAGCCTATTGTATTCTATAGTGCTGAATATCTTGTGTAATTTATTGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTATTGTATTCTATAGTGCTGAATATCTTGTGTAATTTATTGTCTA  350

seq1  CTGTACTGAGAGTATAAAGACAGAGAGAGCAGTTGTATCAGCATTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTGAGAGTATAAAGACAGAGAGAGCAGTTGTATCAGCATTCTTTC  400

seq1  CCACTATCATGCGGGTGAAAGTGCCACAGTGTGTTGGAGACTGTAATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATCATGCGGGTGAAAGTGCCACAGTGTGTTGGAGACTGTAATTCA  450

seq1  TTCTTTGCATCAAGAAGGGCTAAAGGATGAAAGGGTTAATGTTAAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCATCAAGAAGGGCTAAAGGATGAAAGGGTTAATGTTAAAGGAA  500

seq1  ACAAACAGCATTTTCCTCTTTTACAATGGTCTGAAAAGTGTAGTCCTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAGCATTTTCCTCTTTTACAATGGTCTGAAAAGTGTAGTCCTAGA  550

seq1  GTAGCAATATCAGCATTGTTAAGACCTTCTCTCAGGGGCTAGGCAGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAATATCAGCATTGTTAAGACCTTCTCTCAGGGGCTAGGCAGATGG  600

seq1  CTAAGTGGGTAAGGGCATTGACATTGCAAACATTAGGGATTCAGTTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGGGTAAGGGCATTGACATTGCAAACATTAGGGATTCAGTTTGAA  650

seq1  TCTCCAGCAACCTCATACAAAACAATGCATGGCTGTATGTCCCTGTAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCAACCTCATACAAAACAATGCATGGCTGTATGTCCCTGTAACC  700

seq1  CCAGCAACCGTATATCCCACGAGTTTGCTGGTCAGCCAGCCAAGCTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACCGTATATCCCACGAGTTTGCTGGTCAGCCAGCCAAGCTGAAA  750

seq1  TAGTGAGCCTGTCTCAGTTAGAATCTTACCAATAAGACAGAAAGCTACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGCCTGTCTCAGTTAGAATCTTACCAATAAGACAGAAAGCTACAG  800

seq1  AGGAAGACACCAACATTGTGCTCTGGCCTCTCTGTAGCTTCATAAGCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACACCAACATTGTGCTCTGGCCTCTCTGTAGCTTCATAAGCCAC  850

seq1  ATACATTTGCAGACTTTCGTGCATCACACAAATACAGCATGGCGTGTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTGCAGACTTTCGTGCATCACACAAATACAGCATGGCGTGTGCA  900

seq1  CACATATAAACACAGCCATGCACACATGAACAATATATATATATACACAC  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CACATATAAACACAGCCATGCACACATGAAC-ATATATATATATACACAC  949

seq1  ACAGCTATTAAAATTTTTCTTTCAGACTCAAAGCTATTGTGAAACTGGTC  1000
      ||||||||  ||| ||||||||||||||||||||||||||| ||||||| 
seq2  ACAGCTAT--AAAATTTTCTTTCAGACTCAAAGCTATTGTG-AACTGGT-  995

seq1  CCAGAAATTTGTGTTTTAATAAGCCTTCCAGGTAGGAATGAAACAGGCTA  1050
      |||| |||||||| ||||||||||||||   ||| |||||||||| ||||
seq2  CCAG-AATTTGTG-TTTAATAAGCCTTC--AGTA-GAATGAAACAAGCTA  1040

seq1  CGGGACCGACTCCAATCTGTATTACTTTTACCAGCCTTAAATATTAAAAC  1100
      ||||| ||||||  |||||||||||||||| ||| |||||| ||| ||||
seq2  CGGGA-CGACTC--ATCTGTATTACTTTTA-CAG-CTTAAA-ATT-AAAC  1083

seq1  CGTAAACATTGAAATTATACAGTTATTTTTTTTCCATGCCATTTGCCTTT  1150
      |||  |||| |||  ||||||| ||||||||   ||||| ||    ||||
seq2  CGT--ACATGGAA--TATACAGGTATTTTTT---CATGCAAT---GCTTT  1123

seq1  CCCCCTGCTTTTTTGTGGTGGCG-GCAATTTGTACTGCA  1188
      ||| |||||||||  |||||||| |||  ||||||||||
seq2  CCCTCTGCTTTTT--TGGTGGCGCGCA--TTGTACTGCA  1158