BAC Information

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BAC

Clone NameB6Ng01-042K01
Chromosome2 (Build37)
Map Location 54,171,777 - 54,276,305
singlet/doubletdoublet
Overlap geneLOC100041792
Upstream geneLOC666872, LOC666876, LOC207933, Rprm, LOC666913, LOC626563
Downstream geneLOC100042878, Galnt13, LOC666936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042K01.bB6Ng01-042K01.g
ACCDH868942DH868943
length9351,063
definitionDH868942|Mus musculus domesticus DNA, BAC clone: B6Ng01-042K01, 5' end.DH868943|Mus musculus domesticus DNA, BAC clone: B6Ng01-042K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,275,372 - 54,276,305)(54,171,777 - 54,172,849)
sequence
gaattcttcaatagaaaggaaaacatgggactagagaaatgttcaccacg
aaaaccactttgctgtgttttctgagcacggagtcaagctcgtaacatct
acactgggtatcttccaacgccccgtaactctagcctcaggggatcagat
gatcagggttgatcaaagcaaggtggaaataaaagaaagagtagacagac
tttagacaggagcatattgtccttttataagaacaacgaggggtaatgta
tgagcacactcctcacagaggtggggtgcagattggggttttaaaagcag
aggacttcttggggtagaaaattctttctccaagtctgttctgcagtctc
aaagtttaaattaccattggatgttggtggggacttattagggaggcagg
tgttgtcaggaccctcttctcgtggcagaagtggaatttagtttccttac
ctaatgagacctcacctaaccatcctttaggttcccttgtcaggatgttt
ctggacctagtggctgctggttgtattgtttttagaaataagttcttttc
aggtcaagaataagggggcgtctgttccaactgaagtgtctatagatttt
acttttgatcagaggttgcacttaggataagagagaacagttctggacag
gaagtgcatttgacttttagtacaagaaaagtggtgagtgtgtgtttcca
gttggtcaatgtcacagccttattcagtttgataccgttgaaagaactga
tgcacaggaaatgtaagaagagaaggagtcacttctccttagagaaaagg
gtcactgttctataccataaacttcttagaaagcaacagtggctccatgt
gtagctagtgttttgttttataaatagaagagagagagaccaagatatgt
ttgataaaagcctggtattgtgagggggggagggg
gaattcctggagagatagttttccatgaaagaccttgaatacagaagtct
gtgatggggtagaatataaaagaagacatagtgagctagtgaataggaga
cataaagaaatgagatggagcttgactctaccatgtaggggaaattctgc
aactctgggaatggctgagatcctcaagcctactcacagaggaggataac
aatcagtattggcattcatttagaaatcatgcctttggggctggttaaga
gcactggttgttcttccgaggtcctaaattcaattcctagcaactacatg
gtggctcaaactacctgtaatgggatctcatgctctcttctgttatgcag
gcatacatgcaaatatcatacatatgtatgaataaataaatctttaaagg
aaaaaagaggaaacatctagtggagaatgtccttagttacacatggctca
ggttaaaattttgaggtacactgctgagccctacttcagtatgaagatcc
aagttgcgatgtagacagctgtctgtgcttctctcataattcattgaatt
ctgaatagtatttcacttcatactagaaaagaacttgttatattcataat
cataatcagggctgttagaaacaaaactcatcctgattaccacagaaaag
gaggtaaacaatagataactccaatcttttctgtttctaaattaactaag
ttggggtgagtgtcctctaaaggatggaatagaatgtggtcttcataagg
ggggtcgttcattttacaagacagagagagcctaatcaaactcgactgta
attacttgtgggtgtgtctccatctctcctggcatgctctgacctgcgat
gttcccactcctccctggtacatcctaagctccccagcgagttctccact
gatatagcacattccagagtgaacctctcaaaataacaaacatcgtgctc
tgtgtttttttttttttttcctcctctgctcttggctgttgttgtctaat
gctagcactgttaccactacgggaaataaagctcctattagcagttctgc
ttcgttctgcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_54275372_54276305
seq2: B6Ng01-042K01.b_46_980 (reverse)

seq1  CCCCT-CCCACCTCACAATACCAGGCTTCTATCAAACATATCTTGGTCTC  49
      ||||| ||| |||||||||||||||||| |||||||||||||||||||||
seq2  CCCCTCCCCCCCTCACAATACCAGGCTTTTATCAAACATATCTTGGTCTC  50

seq1  TCTCTCTTCTATTTATAAAACAAAACACTAGCTACACATGGAGCCACTGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTCTATTTATAAAACAAAACACTAGCTACACATGGAGCCACTGT  100

seq1  TGCTTTCTAAGAAGTTTATGGTATAGAACAGTGACCCTTTTCTCTAAGGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTAAGAAGTTTATGGTATAGAACAGTGACCCTTTTCTCTAAGGA  150

seq1  GAAGTGACTCCTTCTCTTCTTACATTTCCTGTGCATCAGTTCTTTCAACG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGACTCCTTCTCTTCTTACATTTCCTGTGCATCAGTTCTTTCAACG  200

seq1  GTATCAAACTGAATAAGGCTGTGACATTGACCAACTGGAAACACACACTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAACTGAATAAGGCTGTGACATTGACCAACTGGAAACACACACTC  250

seq1  ACCACTTTTCTTGTACTAAAAGTCAAATGCACTTCCTGTCCAGAACTGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTTTCTTGTACTAAAAGTCAAATGCACTTCCTGTCCAGAACTGTT  300

seq1  CTCTCTTATCCTAAGTGCAACCTCTGATCAAAAGTAAAATCTATAGACAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTATCCTAAGTGCAACCTCTGATCAAAAGTAAAATCTATAGACAC  350

seq1  TTCAGTTGGAACAGACGCCCCCTTATTCTTGACCTGAAAAGAACTTATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTGGAACAGACGCCCCCTTATTCTTGACCTGAAAAGAACTTATTT  400

seq1  CTAAAAACAATACAACCAGCAGCCACTAGGTCCAGAAACATCCTGACAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAACAATACAACCAGCAGCCACTAGGTCCAGAAACATCCTGACAAG  450

seq1  GGAACCTAAAGGATGGTTAGGTGAGGTCTCATTAGGTAAGGAAACTAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTAAAGGATGGTTAGGTGAGGTCTCATTAGGTAAGGAAACTAAAT  500

seq1  TCCACTTCTGCCACGAGAAGAGGGTCCTGACAACACCTGCCTCCCTAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCTGCCACGAGAAGAGGGTCCTGACAACACCTGCCTCCCTAATA  550

seq1  AGTCCCCACCAACATCCAATGGTAATTTAAACTTTGAGACTGCAGAACAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCACCAACATCCAATGGTAATTTAAACTTTGAGACTGCAGAACAG  600

seq1  ACTTGGAGAAAGAATTTTCTACCCCAAGAAGTCCTCTGCTTTTAAAACCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAGAAAGAATTTTCTACCCCAAGAAGTCCTCTGCTTTTAAAACCC  650

seq1  CAATCTGCACCCCACCTCTGTGAGGAGTGTGCTCATACATTACCCCTCGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGCACCCCACCTCTGTGAGGAGTGTGCTCATACATTACCCCTCGT  700

seq1  TGTTCTTATAAAAGGACAATATGCTCCTGTCTAAAGTCTGTCTACTCTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTATAAAAGGACAATATGCTCCTGTCTAAAGTCTGTCTACTCTTT  750

seq1  CTTTTATTTCCACCTTGCTTTGATCAACCCTGATCATCTGATCCCCTGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTCCACCTTGCTTTGATCAACCCTGATCATCTGATCCCCTGAG  800

seq1  GCTAGAGTTACGGGGCGTTGGAAGATACCCAGTGTAGATGTTACGAGCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGTTACGGGGCGTTGGAAGATACCCAGTGTAGATGTTACGAGCTT  850

seq1  GACTCCGTGCTCAGAAAACACAGCAAAGTGGTTTTCGTGGTGAACATTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCGTGCTCAGAAAACACAGCAAAGTGGTTTTCGTGGTGAACATTTC  900

seq1  TCTAGTCCCATGTTTTCCTTTCTATTGAAGAATTC  934
      |||||||||||||||||||||||||||||||||||
seq2  TCTAGTCCCATGTTTTCCTTTCTATTGAAGAATTC  935

seq1: chr2_54171777_54172849
seq2: B6Ng01-042K01.g_66_1128

seq1  GAATTCCTGGAGAGATAGTTTTCCATGAAAGACCTTGAATACAGAAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAGAGATAGTTTTCCATGAAAGACCTTGAATACAGAAGTCT  50

seq1  GTGATGGGGTAGAATATAAAAGAAGACATAGTGAGCTAGTGAATAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGGGTAGAATATAAAAGAAGACATAGTGAGCTAGTGAATAGGAGA  100

seq1  CATAAAGAAATGAGATGGAGCTTGACTCTACCATGTAGGGGAAATTCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGAAATGAGATGGAGCTTGACTCTACCATGTAGGGGAAATTCTGC  150

seq1  AACTCTGGGAATGGCTGAGATCCTCAAGCCTACTCACAGAGGAGGATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGGGAATGGCTGAGATCCTCAAGCCTACTCACAGAGGAGGATAAC  200

seq1  AATCAGTATTGGCATTCATTTAGAAATCATGCCTTTGGGGCTGGTTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTATTGGCATTCATTTAGAAATCATGCCTTTGGGGCTGGTTAAGA  250

seq1  GCACTGGTTGTTCTTCCGAGGTCCTAAATTCAATTCCTAGCAACTACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGTTGTTCTTCCGAGGTCCTAAATTCAATTCCTAGCAACTACATG  300

seq1  GTGGCTCAAACTACCTGTAATGGGATCTCATGCTCTCTTCTGTTATGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCAAACTACCTGTAATGGGATCTCATGCTCTCTTCTGTTATGCAG  350

seq1  GCATACATGCAAATATCATACATATGTATGAATAAATAAATCTTTAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATGCAAATATCATACATATGTATGAATAAATAAATCTTTAAAGG  400

seq1  AAAAAAGAGGAAACATCTAGTGGAGAATGTCCTTAGTTACACATGGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAGGAAACATCTAGTGGAGAATGTCCTTAGTTACACATGGCTCA  450

seq1  GGTTAAAATTTTGAGGTACACTGCTGAGCCCTACTTCAGTATGAAGATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAAATTTTGAGGTACACTGCTGAGCCCTACTTCAGTATGAAGATCC  500

seq1  AAGTTGCGATGTAGACAGCTGTCTGTGCTTCTCTCATAATTCATTGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCGATGTAGACAGCTGTCTGTGCTTCTCTCATAATTCATTGAATT  550

seq1  CTGAATAGTATTTCACTTCATACTAGAAAAGAACTTGTTATATTCATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAGTATTTCACTTCATACTAGAAAAGAACTTGTTATATTCATAAT  600

seq1  CATAATCAGGGCTGTTAGAAACAAAACTCATCCTGATTACCACAGAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCAGGGCTGTTAGAAACAAAACTCATCCTGATTACCACAGAAAAG  650

seq1  GAGGTAAACAATAGATAACTCCAATCTTTTCTGTTTCTAAATTAACTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAAACAATAGATAACTCCAATCTTTTCTGTTTCTAAATTAACTAAG  700

seq1  TTGGGGTGAGTGTCCTCTAAAGGATGGAATAGAATGTGGTCTTCATAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTGAGTGTCCTCTAAAGGATGGAATAGAATGTGGTCTTCATAAGG  750

seq1  GGGGTCGTTCATTTTACAAGACAGAGAGAGCCTAATCAAACTCGACTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCGTTCATTTTACAAGACAGAGAGAGCCTAATCAAACTCGACTGTA  800

seq1  ATTACTTGTGGGTGTGTCTCCATCTCTCCTGGCATGCTCTGACCTGCGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTGTGGGTGTGTCTCCATCTCTCCTGGCATGCTCTGACCTGCGAT  850

seq1  GTTCCCACTCCTCCCTGGTACATCCTAAGCTCCCCAGCGAGTTCTCCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCACTCCTCCCTGGTACATCCTAAGCTCCCCAGCGAGTTCTCCACT  900

seq1  GATATAGCACATTCCAGAGTGAACCTCTCAAAATAACAAACATCGTGCTT  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GATATAGCACATTCCAGAGTGAACCTCTCAAAATAACAAACATCGTGC-T  949

seq1  CTGTGTTTTTTTTTTTTTTTTTCCT-CTCTGCTCTTGGCTGTTTGTTGTT  999
      |||||  |||||||||||||||||| ||||||||||||||| |||||| |
seq2  CTGTG--TTTTTTTTTTTTTTTCCTCCTCTGCTCTTGGCTG-TTGTTG-T  995

seq1  CTTAATTGCTAGCACTGTTACCACTTACGGGAAATAAAAGCTCCTATTAG  1049
      ||  | |||||||||||||||||| |||||||||| ||||||||||||| 
seq2  CT--AATGCTAGCACTGTTACCAC-TACGGGAAAT-AAAGCTCCTATTA-  1040

seq1  GCAGTTCTGCTTCCGTTCTGCAGG  1073
      |||||||||||| |||||||||||
seq2  GCAGTTCTGCTT-CGTTCTGCAGG  1063