BAC Information

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BAC

Clone NameB6Ng01-042L07
Chromosome2 (Build37)
Map Location 28,605,590 - 28,782,145
singlet/doubletdoublet
Overlap gene1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1
Upstream geneRxra, Col5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik
Downstream geneLOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042L07.bB6Ng01-042L07.g
ACCDH868997DH868998
length1,1761,177
definitionDH868997|Mus musculus domesticus DNA, BAC clone: B6Ng01-042L07, 5' end.DH868998|Mus musculus domesticus DNA, BAC clone: B6Ng01-042L07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,605,590 - 28,606,791)(28,780,953 - 28,782,145)
sequence
gaattccagggatcgggaacttcctcaggaaaggggccagtgtgtctttg
ccacctgagggtctggctctctaaccacagggcagcccctcacccgctca
cgaggctgtgcagactcacctggttggagagtataccctgcctttcttgg
gggagggagatggggctcatttccagactgtgacatgccactgcgtcacc
tccattcaggagggtggtgttgacccctgatctagtcagcagtctcattc
ttggatactgtttgggttttccatggaggagattaaaaacagccaaaggg
cagggtgtggtggtacacagcattgatcccagcactccagaaacagaggc
aggtgagcctctgagagttccaggccagccaggagtgagactcttgtctc
aaatgaaaataaaacaccaacaaaaatcagccagaggcctagcttgtctt
tggatctagcctttgccttaaatgcgtagtggatttatcttgagctgtct
gctcacggcaggcgtggtcccttcaggaccctgcaaggcaggatgtgtct
cttcagtggggctcattagccctgggttctagctttcccatctcctggct
cttcaggaagagcgagctagagctatcctccacagctctgcctcgctggc
tctcggcaggcttgccatggcttctcctgcaacccagcagttaatgcagc
cttcttgtaggaaggcccaccttccttgtcgcgtcccaggcccctgcccg
tttccaggggaaactgcagcgatttaattggcataataaaaatggcagtc
ctagtgtgttttgttaggaaaagatcattacctaaagttaccggcattgt
ctcccacacagcctctatttcctaaacatgtctgcctggtaaggtccctg
gaggtctcatagaatccaaacagaggtgggaggtctgacgagatctgaga
ccctcacctgaacaatcacctagcaaactagctaacagagcttaagcaca
ccataccagcccatgtcagcccaaacagggatggttacagcgatcttgaa
agcatctgcaattcctgtccagagcaacctgcatcaagctagtgcacgac
tcattttgtgaaaccgggaatatatccaccgctaaatgcacgaaaaagtc
aacatagctgcctctctcctgtttaa
gaattcacaggcagcaagaagagagagcccctgggccacatttgaggatt
tgactccccaaagcccacccccagtgacacacttcctccaaaaaggccac
aactcttactccctgttaaacagtgccactccctaatgaccaagcattca
aatatctgagcctgtgggggccattcctattcaaaccaccaccaagcccc
aggcaacttgaggttctcaggactcatctgtgcccctgcctggctgatgc
ctggatagggagcctggcattcatttctttctaaccaaccccacatacac
agaactgttttcccacaaacttgcttccccctcagtcttcccaggtcata
agtgacgccatgcacccaagtactaaagctcaaaccttccctggctcagg
tccctttatctgtcacatctaacccaccacaagactctgggaggtagttc
agttggtagagtgcttgttcagccccaggttccatgcccagcatggcata
aacccaggatagaggcatacacctataaccctagctcttggacatagagg
catgagggccaaggtaacatagtaaccttgagctgtgtgggacatggtct
cagaaaatgtagccatagtggtgcactgctttaatcccagcactcaggag
gcacaggcaagaggatctctgtgagttcgaggtcagcctggtctacagag
tgagttccaggatagccaggcatatatatagtgaagccctctctcaaaac
aaaacaaaacagaaaataggtgcgtgggactcgccaggatctcatggatg
ctgcccgaaaagccgaacccagcagccctgtctttcaagctctgctccct
gcatctgagttgcttcccagctcaaaacagttcagtagctcccccaccca
acccccactttcccagctccttacaagccttgtttctagagcagactttc
aaagtttgtggctctgaaggaagaggccaaggcccaacaggtgaggtcct
cagcccagtacgattagacttacctgaggtagggactctactgatccctg
aattacctccaatcctgggcctttctcgtccctctggtatgctcacttct
gccctaagcttaagtctctttcttcctgcatgccgaatggaaggtctacc
gacacctgactcttccttgtcttcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_28605590_28606791
seq2: B6Ng01-042L07.b_44_1219

seq1  GAATTCCAGGGATCGGGAACTTCCTCAGGAAAGGGGCCAGTGTGTCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGATCGGGAACTTCCTCAGGAAAGGGGCCAGTGTGTCTTTG  50

seq1  CCACCTGAGGGTCTGGCTCTCTAACCACAGGGCAGCCCCTCACCCGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGAGGGTCTGGCTCTCTAACCACAGGGCAGCCCCTCACCCGCTCA  100

seq1  CGAGGCTGTGCAGACTCACCTGGTTGGAGAGTATACCCTGCCTTTCTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCTGTGCAGACTCACCTGGTTGGAGAGTATACCCTGCCTTTCTTGG  150

seq1  GGGAGGGAGATGGGGCTCATTTCCAGACTGTGACATGCCACTGCGTCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGAGATGGGGCTCATTTCCAGACTGTGACATGCCACTGCGTCACC  200

seq1  TCCATTCAGGAGGGTGGTGTTGACCCCTGATCTAGTCAGCAGTCTCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCAGGAGGGTGGTGTTGACCCCTGATCTAGTCAGCAGTCTCATTC  250

seq1  TTGGATACTGTTTGGGTTTTCCATGGAGGAGATTAAAAACAGCCAAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATACTGTTTGGGTTTTCCATGGAGGAGATTAAAAACAGCCAAAGGG  300

seq1  CAGGGTGTGGTGGTACACAGCATTGATCCCAGCACTCCAGAAACAGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGTGGTGGTACACAGCATTGATCCCAGCACTCCAGAAACAGAGGC  350

seq1  AGGTGAGCCTCTGAGAGTTCCAGGCCAGCCAGGAGTGAGACTCTTGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGCCTCTGAGAGTTCCAGGCCAGCCAGGAGTGAGACTCTTGTCTC  400

seq1  AAATGAAAATAAAACACCAACAAAAATCAGCCAGAGGCCTAGCTTGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAATAAAACACCAACAAAAATCAGCCAGAGGCCTAGCTTGTCTT  450

seq1  TGGATCTAGCCTTTGCCTTAAATGCGTAGTGGATTTATCTTGAGCTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTAGCCTTTGCCTTAAATGCGTAGTGGATTTATCTTGAGCTGTCT  500

seq1  GCTCACGGCAGGCGTGGTCCCTTCAGGACCCTGCAAGGCAGGATGTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACGGCAGGCGTGGTCCCTTCAGGACCCTGCAAGGCAGGATGTGTCT  550

seq1  CTTCAGTGGGGCTCATTAGCCCTGGGTTCTAGCTTTCCCATCTCCTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTGGGGCTCATTAGCCCTGGGTTCTAGCTTTCCCATCTCCTGGCT  600

seq1  CTTCAGGAAGAGCGAGCTAGAGCTATCCTCCACAGCTCTGCCTCGCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGAAGAGCGAGCTAGAGCTATCCTCCACAGCTCTGCCTCGCTGGC  650

seq1  TCTCGGCAGGCTTGCCATGGCTTCTCCTGCAACCCAGCAGTTAATGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGCAGGCTTGCCATGGCTTCTCCTGCAACCCAGCAGTTAATGCAGC  700

seq1  CTTCTTGTAGGAAGGCCCACCTTCCTTGTCGCGTCCCAGGCCCCTGCCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTAGGAAGGCCCACCTTCCTTGTCGCGTCCCAGGCCCCTGCCCG  750

seq1  TTTCCAGGGGAAACTGCAGCGATTTAATTGGCATAATAAAAATGGCAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGGGAAACTGCAGCGATTTAATTGGCATAATAAAAATGGCAGTC  800

seq1  CTAGTGTGTTTTGTTAGGAAAAGATCATTACCTAAAGTTACCGGCATTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTGTTTTGTTAGGAAAAGATCATTACCTAAAGTTACCGGCATTGT  850

seq1  CTCCCACACAGCCTCTATTTCCTAAACATGTCTGCCTGGTAAGGTCCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACACAGCCTCTATTTCCTAAACATGTCTGCCTGGTAAGGTCCCTG  900

seq1  GAGGTCTCATAGAATCCAAACAGAGGTGGGAGGTCTGACGGAGATCTGAG  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAGGTCTCATAGAATCCAAACAGAGGTGGGAGGTCTGAC-GAGATCTGAG  949

seq1  ACCCTCACCTGAACAATCACCTAGCAAAACTAGCTAACAGAGCTTAAGCA  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACCCTCACCTGAACAATCACCTAGC-AAACTAGCTAACAGAGCTTAAGCA  998

seq1  CACCATACCAGCCCATGCCAGCCCAAACAGGGATGGTTACAGCGATCCTG  1050
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  CACCATACCAGCCCATGTCAGCCCAAACAGGGATGGTTACAGCGATCTTG  1048

seq1  AGAGCATTCTGCAAGTCCCCGGTCCCAGGAGGCAACCTGCATCAGAGCCT  1100
      | |||| ||||||| |  || || ||||   ||||||||||||| || ||
seq2  AAAGCA-TCTGCAATT--CCTGT-CCAG--AGCAACCTGCATCA-AG-CT  1090

seq1  AGTTGCAACGACTCATTTTGTTAAAACCGGGGAATTAATATTCTCACCGC  1150
      || ||| ||||||||||||| | ||||||||     |||||   ||||||
seq2  AG-TGC-ACGACTCATTTTG-TGAAACCGGG-----AATATATCCACCGC  1132

seq1  TAAATGCACACGAAAGAGTCAACAATAGGCTGCTCTCTCCCCTTTTGTTT  1200
      ||||||  ||||||| ||||||| ||| ||||| ||||| ||   |||||
seq2  TAAATG--CACGAAAAAGTCAAC-ATA-GCTGC-CTCTCTCC---TGTTT  1174

seq1  AA  1202
      ||
seq2  AA  1176

seq1: chr2_28780953_28782145
seq2: B6Ng01-042L07.g_68_1244 (reverse)

seq1  TCTGAAAGACAAGGAAGAGTCAGGTGACAGCATGGACCTTCAGTGCAGCA  50
      |||| ||||||||||||||||||||| | |  | |||||||  | | |||
seq2  TCTG-AAGACAAGGAAGAGTCAGGTGTCGG--TAGACCTTCCATTCGGCA  47

seq1  TGCAGAGAAGAAAGCAGACTTTAAGCCTGAGGCAGAAGTGAGCATAACCA  100
      ||||| |||||||| |||| |||||| |  ||||||||||||||| ||||
seq2  TGCAG-GAAGAAAG-AGAC-TTAAGCTTAGGGCAGAAGTGAGCAT-ACCA  93

seq1  GAGGGGAACGAGAAGGGGCCAGAGATGGGAGGTAACTCAGGGATCAGGTA  150
      |||||  ||||||| || |||| ||| |||||||| |||||||||| |||
seq2  GAGGG--ACGAGAAAGGCCCAG-GATTGGAGGTAATTCAGGGATCA-GTA  139

seq1  GGAAGTCCCTACCTCAGGTAGGTCTTACTCTGTACTGGGCCTGGGGACCT  200
      |  ||||||||||||||||| ||| || || |||||||| ||| ||||||
seq2  G--AGTCCCTACCTCAGGTAAGTC-TAATC-GTACTGGG-CTGAGGACCT  184

seq1  CACCTGCTGGGCCTTGGCCTCTTCCTTCAGAAGCCACAAACTTTGAAAGT  250
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  CACCTGTTGGGCCTTGGCCTCTTCCTTCAG-AGCCACAAACTTTGAAAGT  233

seq1  CTGCTCTAG-AACAAGGCTTGTAAGGAGCTGGG-AAGTGGGGGTTGGGTG  298
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  CTGCTCTAGAAACAAGGCTTGTAAGGAGCTGGGAAAGTGGGGGTTGGGTG  283

seq1  GGGGAGCCTACTGAACTGTTTTGAGCTGGGAAGCAACTCAGATGCAGGGA  348
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAG-CTACTGAACTGTTTTGAGCTGGGAAGCAACTCAGATGCAGGGA  332

seq1  GCAGAGCTTGAAAGACAGGGCTGCTGGGTTCGGCTTTTCGGGCAGCATCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTTGAAAGACAGGGCTGCTGGGTTCGGCTTTTCGGGCAGCATCC  382

seq1  ATGAGATCCTGGCGAGTCCCACGCACCTATTTTCTGTTTTGTTTTGTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATCCTGGCGAGTCCCACGCACCTATTTTCTGTTTTGTTTTGTTTT  432

seq1  GAGAGAGGGCTTCACTATATATATGCCTGGCTATCCTGGAACTCACTCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGGCTTCACTATATATATGCCTGGCTATCCTGGAACTCACTCTG  482

seq1  TAGACCAGGCTGACCTCGAACTCACAGAGATCCTCTTGCCTGTGCCTCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGACCTCGAACTCACAGAGATCCTCTTGCCTGTGCCTCCT  532

seq1  GAGTGCTGGGATTAAAGCAGTGCACCACTATGGCTACATTTTCTGAGACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGGGATTAAAGCAGTGCACCACTATGGCTACATTTTCTGAGACC  582

seq1  ATGTCCCACACAGCTCAAGGTTACTATGTTACCTTGGCCCTCATGCCTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCACACAGCTCAAGGTTACTATGTTACCTTGGCCCTCATGCCTCT  632

seq1  ATGTCCAAGAGCTAGGGTTATAGGTGTATGCCTCTATCCTGGGTTTATGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAAGAGCTAGGGTTATAGGTGTATGCCTCTATCCTGGGTTTATGC  682

seq1  CATGCTGGGCATGGAACCTGGGGCTGAACAAGCACTCTACCAACTGAACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGGGCATGGAACCTGGGGCTGAACAAGCACTCTACCAACTGAACT  732

seq1  ACCTCCCAGAGTCTTGTGGTGGGTTAGATGTGACAGATAAAGGGACCTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCAGAGTCTTGTGGTGGGTTAGATGTGACAGATAAAGGGACCTGA  782

seq1  GCCAGGGAAGGTTTGAGCTTTAGTACTTGGGTGCATGGCGTCACTTATGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGAAGGTTTGAGCTTTAGTACTTGGGTGCATGGCGTCACTTATGA  832

seq1  CCTGGGAAGACTGAGGGGGAAGCAAGTTTGTGGGAAAACAGTTCTGTGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAAGACTGAGGGGGAAGCAAGTTTGTGGGAAAACAGTTCTGTGTA  882

seq1  TGTGGGGTTGGTTAGAAAGAAATGAATGCCAGGCTCCCTATCCAGGCATC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGTTGGTTAGAAAGAAATGAATGCCAGGCTCCCTATCCAGGCATC  932

seq1  AGCCAGGCAGGGGCACAGATGAGTCCTGAGAACCTCAAGTTGCCTGGGGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCAGGGGCACAGATGAGTCCTGAGAACCTCAAGTTGCCTGGGGC  982

seq1  TTGGTGGTGGTTTGAATAGGAATGGCCCCCACAGGCTCAGATATTTGAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGTGGTTTGAATAGGAATGGCCCCCACAGGCTCAGATATTTGAAT  1032

seq1  GCTTGGTCATTAGGGAGTGGCACTGTTTAACAGGGAGTAAGAGTTGTGGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTCATTAGGGAGTGGCACTGTTTAACAGGGAGTAAGAGTTGTGGC  1082

seq1  CTTTTTGGAGGAAGTGTGTCACTGGGGGTGGGCTTTGGGGAGTCAAATCC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGGAGGAAGTGTGTCACTGGGGGTGGGCTTTGGGGAGTCAAATCC  1132

seq1  TCAAATGTGGCCCAGGGGCTCTCTCTTCTTGCTGCCTGTGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTGGCCCAGGGGCTCTCTCTTCTTGCTGCCTGTGAATTC  1177