BAC Information

Click to search

BAC

Clone NameB6Ng01-042N09
Chromosome2 (Build37)
Map Location 77,631,799 - 77,818,781
singlet/doubletdoublet
Overlap geneZfp533, BC003993, LOC667920
Upstream geneTtn, 2610301F02Rik, Sestd1, LOC623706, LOC667906
Downstream geneOTTMUSG00000016703, LOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042N09.bB6Ng01-042N09.g
ACCDH869088DH869089
length1,1641,110
definitionDH869088|Mus musculus domesticus DNA, BAC clone: B6Ng01-042N09, 5' end.DH869089|Mus musculus domesticus DNA, BAC clone: B6Ng01-042N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,817,593 - 77,818,781)(77,631,799 - 77,632,925)
sequence
gaattctaacagctttgccctgggccagtagccttagccactaccttatc
ctgcaggtttctattccacaaggattttcagaaaccaggaagaaatgtga
tcaaagattcagtatgtcagtcttgggctgttcgcatcacaaaagctccc
aactatacagaaaatgtgaaacaaaaaataataataataataatttccta
agtttcatactccttatgatatacctccctgttctatgcctgataacaat
ttctatttatagatcaaaaccacgactttttttttttatcctgaaacgtc
ctgataggcagaacactaatttttagaagagcgttttcctagagcagtct
gacaaaattttgtcatcttttaatatactattaacgagcttgctgactgc
agatgctgggcttaaaacacagcaccaaatgatattaaatttttactaga
tctaagactaaagcaggtagcaaaatccccattattgctttttctgggta
aactcatgtgacttaatccaaggcttaccaagcacatactgaaggatcaa
gtgagattgtagacaccttctctttgtcatatagtctcgtcgctgtctta
catggacctaatttccaccgaagtgcttattcaaaataaataaaataaac
taaaacaaaacgcacaggtctcttctgtatgctgtacctggcttgggcag
gaaggagttcatagttcgagcagatcttctttctggggactgatgttata
agattcccccaaatgtctggcctctgccctaccttccattcccatttgga
gcccggaaatggcagaacaagctcctgaacgcaagcctaggtgcccttca
gctcctccttctgttccgtttctttccccaaaattatgatcacagaaaca
agctgcatgagggaatgggaaaaaaaaaaactctagaggaaaaaaaaagt
aatatttttaatatcctgtgtgtgcccatgcattttgtatttgcatgcat
tgattatctggctctaaatatgctgactgtggctgtttaaccactgcaga
agctttcattatcttgccttgttgtaaaggaggtcctgagaggcctgagg
tgtcttccctcctctgagtgctggtgactaaaaatacgaacaactgggtt
acactatccctaaa
gaattcaggcaccgtgcaagagcagccagagctcttacctgctgaactat
ctctctagctcccttcaacgtattttgaagcatcaagagaattcacatag
gttggaagcaggtgccccagtactgcctgcattgtgccatgagtccttta
gggcacatcgatgttggctgagcatggcacgatcttgctaaggaagagcc
acttatttctcatcacatcaagctacatccatattcaggacaattctgac
aagaggctctgagccctctgcaaaagagtctggattgtctgtgggaaaac
ttgaaccatctgagctgtttgatcagagcaatctcatgatcgagttttcc
tttagaaacatatttttggtaacactgcagagctgagatcggctgatgaa
gtaaagagtgaaaacgggagaccatttagaaagtcgttgcaataacccag
gagagagagaaactcagtagcaacactctgtggctttcactgtttcaatc
cctggtgccctatactttgtgatatagaaggagggatatgaaattttctc
ctccaattttgaggtttctatactgtcccattgatttctcttgatttctt
gctgccgtaacccatcattcacccagcactattgaatctgactttcaata
acttgagagtgtttcctcctcttcctgacaatgagttgataaaggttaca
tttatcctgcagaccataatttccaaactaggcagaaactgttcttggag
gattctgtgaaaaaggaaggcttcttgccaaatacccctgtaagaccctg
ggatatgcaactttaagaagcttattttcctgagcttctaagaattctca
tgtgaattgtaagttctgagggagggcgggccgaattcaacaagtgaccc
tgatttgtagaaaacatgttggaaaacagtgattccctctcaaacagtat
gcaaaatgctggcgtaagcatctcagggttttctctatttcttaaaactt
tgctcttgacaaataggtgatattctagagaccatagaaacaagcaacaa
acctcagttgcatattcatcgcaggacaacatggccctccagcgtgactt
tttttaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_77817593_77818781
seq2: B6Ng01-042N09.b_43_1206 (reverse)

seq1  TTTATGGGATAATGTGTTACCCAGTTTTGTTCTGTTTTTTTTTTAAGTCA  50
      |||| ||||||  |||| ||||||  |||||| || |||||    |||||
seq2  TTTA-GGGATA--GTGTAACCCAG--TTGTTC-GTATTTTT----AGTCA  40

seq1  CTAGCACTCAGGAGAGGGAAGAACAACCTCAAGGGCCTCTCAGGAACCTC  100
      | |||||||||  |||||||||   ||||||  ||||||||||| |||||
seq2  CCAGCACTCAGAGGAGGGAAGA--CACCTCA--GGCCTCTCAGG-ACCTC  85

seq1  CTTTACTACAAGGCAAGATAAATGATAGCTTCTGCAGT-GTTAAACAG-C  148
      |||||| |||||||||||| ||||| |||||||||||| ||||||||| |
seq2  CTTTACAACAAGGCAAGAT-AATGAAAGCTTCTGCAGTGGTTAAACAGCC  134

seq1  ACAGTCAGCAATATTAGAGCCAAGATAATCAATGCATGCAAAATACAAAA  198
      ||||||||||   |||||||| ||||||||||||||||| ||||||||||
seq2  ACAGTCAGCATATTTAGAGCC-AGATAATCAATGCATGC-AAATACAAAA  182

seq1  TGCATGGGCCACACACAGGATATTTAAAAATATTTACCTTTTTTTTTTCC  248
      |||||||| ||||||||||||| ||||||||| ||||  |||||||||||
seq2  TGCATGGG-CACACACAGGATA-TTAAAAATA-TTAC--TTTTTTTTTCC  227

seq1  TCCTAGAGTTTTTTTTTTTTTCCCATTCCCTCATGCAGCTTGTTTCTTGT  298
      | ||||||  |||||||||||||||||||||||||||||||||||| |||
seq2  T-CTAGAG--TTTTTTTTTTTCCCATTCCCTCATGCAGCTTGTTTC-TGT  273

seq1  GATCATAATTTTGGGGAAAGAAACGGAACAGAAGGAGGAGCTGAAGGGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATAATTTTGGGGAAAGAAACGGAACAGAAGGAGGAGCTGAAGGGCA  323

seq1  CCTAGGCTTGCGTTCAGGAGCTTGTTCTGCCATTTCCGGGCTCCAAATGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCTTGCGTTCAGGAGCTTGTTCTGCCATTTCCGGGCTCCAAATGG  373

seq1  GAATGGAAGGTAGGGCAGAGGCCAGACATTTGGGGGAATCTTATAACATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAAGGTAGGGCAGAGGCCAGACATTTGGGGGAATCTTATAACATC  423

seq1  AGTCCCCAGAAAGAAGATCTGCTCGAACTATGAACTCCTTCCTGCCCAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCAGAAAGAAGATCTGCTCGAACTATGAACTCCTTCCTGCCCAAG  473

seq1  CCAGGTACAGCATACAGAAGAGACCTGTGCGTTTTGTTTTAGTTTATTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTACAGCATACAGAAGAGACCTGTGCGTTTTGTTTTAGTTTATTTT  523

seq1  ATTTATTTTGAATAAGCACTTCGGTGGAAATTAGGTCCATGTAAGACAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTGAATAAGCACTTCGGTGGAAATTAGGTCCATGTAAGACAGC  573

seq1  GACGAGACTATATGACAAAGAGAAGGTGTCTACAATCTCACTTGATCCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGACTATATGACAAAGAGAAGGTGTCTACAATCTCACTTGATCCTT  623

seq1  CAGTATGTGCTTGGTAAGCCTTGGATTAAGTCACATGAGTTTACCCAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGTGCTTGGTAAGCCTTGGATTAAGTCACATGAGTTTACCCAGAA  673

seq1  AAAGCAATAATGGGGATTTTGCTACCTGCTTTAGTCTTAGATCTAGTAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATAATGGGGATTTTGCTACCTGCTTTAGTCTTAGATCTAGTAAA  723

seq1  AATTTAATATCATTTGGTGCTGTGTTTTAAGCCCAGCATCTGCAGTCAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATATCATTTGGTGCTGTGTTTTAAGCCCAGCATCTGCAGTCAGC  773

seq1  AAGCTCGTTAATAGTATATTAAAAGATGACAAAATTTTGTCAGACTGCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCGTTAATAGTATATTAAAAGATGACAAAATTTTGTCAGACTGCTC  823

seq1  TAGGAAAACGCTCTTCTAAAAATTAGTGTTCTGCCTATCAGGACGTTTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAACGCTCTTCTAAAAATTAGTGTTCTGCCTATCAGGACGTTTCA  873

seq1  GGATAAAAAAAAAAAGTCGTGGTTTTGATCTATAAATAGAAATTGTTATC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAAAAAAAAAGTCGTGGTTTTGATCTATAAATAGAAATTGTTATC  923

seq1  AGGCATAGAACAGGGAGGTATATCATAAGGAGTATGAAACTTAGGAAATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAGAACAGGGAGGTATATCATAAGGAGTATGAAACTTAGGAAATT  973

seq1  ATTATTATTATTATTTTTTGTTTCACATTTTCTGTATAGTTGGGAGCTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTATTTTTTGTTTCACATTTTCTGTATAGTTGGGAGCTTT  1023

seq1  TGTGATGCGAACAGCCCAAGACTGACATACTGAATCTTTGATCACATTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGCGAACAGCCCAAGACTGACATACTGAATCTTTGATCACATTTC  1073

seq1  TTCCTGGTTTCTGAAAATCCTTGTGGAATAGAAACCTGCAGGATAAGGTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGTTTCTGAAAATCCTTGTGGAATAGAAACCTGCAGGATAAGGTA  1123

seq1  GTGGCTAAGGCTACTGGCCCAGGGCAAAGCTGTTAGAATTC  1189
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAAGGCTACTGGCCCAGGGCAAAGCTGTTAGAATTC  1164

seq1: chr2_77631799_77632925
seq2: B6Ng01-042N09.g_68_1177

seq1  GAATTCAGGCACCGTGCAAGAGCAGCCAGAGCTCTTACCTGCTGAACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCACCGTGCAAGAGCAGCCAGAGCTCTTACCTGCTGAACTAT  50

seq1  CTCTCTAGCTCCCTTCAACGTATTTTGAAGCATCAAGAGAATTCACATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGCTCCCTTCAACGTATTTTGAAGCATCAAGAGAATTCACATAG  100

seq1  GTTGGAAGCAGGTGCCCCAGTACTGCCTGCATTGTGCCATGAGTCCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAGCAGGTGCCCCAGTACTGCCTGCATTGTGCCATGAGTCCTTTA  150

seq1  GGGCACATCGATGTTGGCTGAGCATGGCACGATCTTGCTAAGGAAGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACATCGATGTTGGCTGAGCATGGCACGATCTTGCTAAGGAAGAGCC  200

seq1  ACTTATTTCTCATCACATCAAGCTACATCCATATTCAGGACAATTCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTCTCATCACATCAAGCTACATCCATATTCAGGACAATTCTGAC  250

seq1  AAGAGGCTCTGAGCCCTCTGCAAAAGAGTCTGGATTGTCTGTGGGAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCTCTGAGCCCTCTGCAAAAGAGTCTGGATTGTCTGTGGGAAAAC  300

seq1  TTGAACCATCTGAGCTGTTTGATCAGAGCAATCTCATGATCGAGTTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCATCTGAGCTGTTTGATCAGAGCAATCTCATGATCGAGTTTTCC  350

seq1  TTTAGAAACATATTTTTGGTAACACTGCAGAGCTGAGATCGGCTGATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAACATATTTTTGGTAACACTGCAGAGCTGAGATCGGCTGATGAA  400

seq1  GTAAAGAGTGAAAACGGGAGACCATTTAGAAAGTCGTTGCAATAACCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAGTGAAAACGGGAGACCATTTAGAAAGTCGTTGCAATAACCCAG  450

seq1  GAGAGAGAGAAACTCAGTAGCAACACTCTGTGGCTTTCACTGTTTCAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAAACTCAGTAGCAACACTCTGTGGCTTTCACTGTTTCAATC  500

seq1  CCTGGTGCCCTATACTTTGTGATATAGAAGGAGGGATATGAAATTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGCCCTATACTTTGTGATATAGAAGGAGGGATATGAAATTTTCTC  550

seq1  CTCCAATTTTGAGGTTTCTATACTGTCCCATTGATTTCTCTTGATTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATTTTGAGGTTTCTATACTGTCCCATTGATTTCTCTTGATTTCTT  600

seq1  GCTGCCGTAACCCATCATTCACCCAGCACTATTGAATCTGACTTTCAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCGTAACCCATCATTCACCCAGCACTATTGAATCTGACTTTCAATA  650

seq1  ACTTGAGAGTGTTTCCTCCTCTTCCTGACAATGAGTTGATAAAGGTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGAGTGTTTCCTCCTCTTCCTGACAATGAGTTGATAAAGGTTACA  700

seq1  TTTATCCTGCAGACCATAATTTCCAAACTAGGCAGAAACTGTTCTTGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCTGCAGACCATAATTTCCAAACTAGGCAGAAACTGTTCTTGGAG  750

seq1  GATTCTGTGAAAAAGGAAGGCTTCTTGCCAAATACCCCTGTAAGACCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTGAAAAAGGAAGGCTTCTTGCCAAATACCCCTGTAAGACCCTG  800

seq1  GGATATGCAACTTTAAGAAGCTTATTTTCCTGAGCTTCTAAGAATTCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGCAACTTTAAGAAGCTTATTTTCCTGAGCTTCTAAGAATTCTCA  850

seq1  TGTGAATTGTAAGTTCTGAGGGAGGGCGGGCCGAATTCAACAAGTGACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTGTAAGTTCTGAGGGAGGGCGGGCCGAATTCAACAAGTGACCC  900

seq1  TGATTTGTAGAAAACATGTTGGAAAACAGTGATTCCCTCTCAAAACAGTA  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGATTTGTAGAAAACATGTTGGAAAACAGTGATTCCCTCTC-AAACAGTA  949

seq1  TGCAAAATGCTGGCGTAAGCAATCTCAGGGTTTTCTCTAATTTCCTTAAA  1000
      |||||||||||||||||||| ||||||||||||||||||  || ||||||
seq2  TGCAAAATGCTGGCGTAAGC-ATCTCAGGGTTTTCTCTA--TTTCTTAAA  996

seq1  ACTTTGCTCTTTGACAAAATAGGTGATATCCTAGAGACCAATAAGAAACA  1050
      ||||||||| ||||| ||||||||||||| ||||||||||   |||||| 
seq2  ACTTTGCTC-TTGAC-AAATAGGTGATATTCTAGAGACCA--TAGAAAC-  1041

seq1  AAGCAAAACAAAACCTCAGTTGCAATAATCATCGCAAGGACAAACAGTGC  1100
      ||||||    ||||||||||||| ||| ||||||| ||||| ||||  ||
seq2  AAGCAA---CAAACCTCAGTTGC-ATATTCATCGC-AGGAC-AACATGGC  1085

seq1  TCTCCAGCGTAGACTTTTTTTATATTT  1127
       ||||||||| ||||||||||| ||||
seq2  CCTCCAGCGT-GACTTTTTTTA-ATTT  1110