BAC Information

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BAC

Clone NameB6Ng01-043F21
Chromosome2 (Build37)17 (Build37)
Map Location 45,133,358 - 45,133,95056,883,334 - 56,883,494
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneArhgap15, Gtdc1, Zeb2
Downstream geneLOC100042661, LOC100041337, LOC666604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043F21.bB6Ng01-043F21.g
ACCDH869454DH869455
length587345
definitionDH869454|Mus musculus domesticus DNA, BAC clone: B6Ng01-043F21, 5' end.DH869455|Mus musculus domesticus DNA, BAC clone: B6Ng01-043F21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,133,358 - 45,133,950)(56,883,334 - 56,883,494)
sequence
tagaagtggtggcttagtgttcttcccatctagggctctcctcccaccac
ctccccatctggacctaacctatgacttctgctatcttattcaccaagtc
cacctacagtcaactaatcatctagtgttcatgaatatgtctagggaaat
aattttacattgatgaccaaaaaaaaaaaaatctcttaaaatacagaagt
gaacacaaagagttaaaaaaacgaagaaatcattcactttgaaatatatg
gtgatgttattatttttaaataatatttgttaatagggaggtgtgggtat
attatgaattaaatcaaaccacaattgtccctgaacgaatttcacaatac
attaattgaaaatctttaactttcaatttccaacttaaaattttttattg
tgttcagaagaatgcatttatctcagttcaataaacaaccgtttaggttt
atcatgggctatgtactgtgctgggtgctgggtatcatggtagggacatc
ccttccaggtgaaaatgggcatgtcagaaaatgataccatgtcagggatg
ctccactcctccattaatcattaggtagtcaggttta
atctctgtctctatattatttcatggcttttttgtttggctcttttttcc
tgtttgattatttgtttgtttcataatattctggtttggttgagtttatt
ttattatcatttttatttttagatacctgtttgttttctcatgagagtgg
gacagagagtgtgtgtatttggataggtggggaattgcaagactctgggt
ggaatttgggaggaggaaatattaatcagaatatggtgtttagaagatat
tttaaaaattaagatagaaggaagagagaaagaaagaaagaaagaaagag
agagagagagaaggaaggaaggaaggaaggaaggaaggaaggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45133358_45133950
seq2: B6Ng01-043F21.b_50_642

seq1  GAATTCTAGAAGTGGTGGCTTAGTGTTCTTCCCATCTAGGGCTCTCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAAGTGGTGGCTTAGTGTTCTTCCCATCTAGGGCTCTCCTCC  50

seq1  CACCACCTCCCCATCTGGACCTAACCTATGACTTCTGCTATCTTATTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCTCCCCATCTGGACCTAACCTATGACTTCTGCTATCTTATTCAC  100

seq1  CAAGTCCACCTACAGTCAACTAATCATCTAGTGTTCATGAATATGTCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCACCTACAGTCAACTAATCATCTAGTGTTCATGAATATGTCTAG  150

seq1  GGAAATAATTTTACATTGATGACCAAAAAAAAAAAAATCTCTTAAAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAATTTTACATTGATGACCAAAAAAAAAAAAATCTCTTAAAATAC  200

seq1  AGAAGTGAACACAAAGAGTTAAAAAAACGAAGAAATCATTCACTTTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGAACACAAAGAGTTAAAAAAACGAAGAAATCATTCACTTTGAAA  250

seq1  TATATGGTGATGTTATTATTTTTAAATAATATTTGTTAATAGGGAGGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGTGATGTTATTATTTTTAAATAATATTTGTTAATAGGGAGGTGT  300

seq1  GGGTATATTATGAATTAAATCAAACCACAATTGTCCCTGAACGAATTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATATTATGAATTAAATCAAACCACAATTGTCCCTGAACGAATTTCA  350

seq1  CAATACATTAATTGAAAATCTTTAACTTTCAATTTCCAACTTAAAATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACATTAATTGAAAATCTTTAACTTTCAATTTCCAACTTAAAATTTT  400

seq1  TTATTGTGTTCAGAAGAATGCATTTATCTCAGTTCAATAAACAACCGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTGTTCAGAAGAATGCATTTATCTCAGTTCAATAAACAACCGTTT  450

seq1  AGGTTTATCATGGGCTATGTACTGTGCTGGGTGCTGGGTAGCATGGTAGG  500
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGTTTATCATGGGCTATGTACTGTGCTGGGTGCTGGGTATCATGGTAGG  500

seq1  GACATCCCTTCCAGGTGAAAATGGGCATGTCAGAAAATGATACCATGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCCTTCCAGGTGAAAATGGGCATGTCAGAAAATGATACCATGTCA  550

seq1  GGGATGCTCCACTCCTCCATTAATCATCAGGTATTCAGGTTGA  593
      ||||||||||||||||||||||||||| ||||| ||||||| |
seq2  GGGATGCTCCACTCCTCCATTAATCATTAGGTAGTCAGGTTTA  593

seq1: chr17_56883334_56883494
seq2: B6Ng01-043F21.g_343_416 (reverse)

seq1  CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  50
                          ||||||||||||||||||||||||||||||
seq2  --------------------CTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  30

seq1  TCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCTCTCTCTCTTTCTCTCT  100
      ||||                       ||||||||||||||||    |||
seq2  TCCT-----------------------TCTCTCTCTCTCTCTT----TCT  53

seq1  TTCTCTCTTTCTTTCTCTCTTTCTCTCTCTCTCTCTTTCTTTCTTTCTTT  150
      |||| ||||||||||||||||                             
seq2  TTCTTTCTTTCTTTCTCTCTT-----------------------------  74

seq1  CTTTCTTTCTT  161
                 
seq2  -----------  74