BAC Information

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BAC

Clone NameB6Ng01-043K11
Chromosome2 (Build37)
Map Location 105,617,171 - 105,746,351
singlet/doubletdoublet
Overlap geneElp4, Immp1l
Upstream geneQser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, LOC100043394
Downstream geneLOC100043402, Dph4, LOC668765, Dcdc5, 9330126M15, C130023O10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043K11.bB6Ng01-043K11.g
ACCDH869651DH869652
length1,078974
definitionDH869651|Mus musculus domesticus DNA, BAC clone: B6Ng01-043K11, 5' end.DH869652|Mus musculus domesticus DNA, BAC clone: B6Ng01-043K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,617,171 - 105,618,274)(105,745,367 - 105,746,351)
sequence
gaattcttaggctaatggatggaaatataactcttagggaatcaataatt
ttaattaaaggtaaagggttagtggggagatggctcagtggcgaaagtgc
ttggcatgcatgatgccttgggtttgatccctgggacccacataaaaagc
caggcgtggcagcatatatggattaatccctgtgctgggaagggggagac
aggctctctggggcttgctggccagccagtgtttctctgaatcagtgggc
ttcagattccgggagagactgtctcaaaattcaggtggagaggataagag
aaagctaactgatgttgatccccgacctgaaaatgcacacacatgaacta
agggaaagcagtaataaagtgacttgagtgcccgctctgacgacccacga
gaactaactcagagacaacctgtcaggccatctgaatttcaatcttcaaa
tatggaggacaattcaaaatataccttattaaaataggtttatatatatt
ttgcctgcatctatttatatgtgtaccatacgtgtgtctggtgaccatga
gttcaaaactgggaaggcattgaagcccgagtaactggaattacatgcag
ttgaaaagccaccatgtgggtaaactgacatgggtcttctaaaagaccaa
taaatattcttaactgctgagcaatctccctagcccggattctattttat
acatggtcttatctctacatggtttacaaatgaatagttttaataactaa
atacctttattcaacctcaattttccactcacatgtgtacattggatcca
gacttcatttaccagtagtgggaaaaagagtgactaactctacggatgaa
gcataaaatgttgcttgcttgtaaccattcatcatcttagactgtctcaa
tcgtcatgatgtggaacttgtctgaagacgctttcagttagaatgagaca
tatctagtgagaagtgattcccatatgacagtctgaaatcactatggtag
tgctttctgtatccagccctgggggagttgggggcgtagcggtcacatgg
tgtcaggccaatctgagaactagtgaga
gaattctttatttgctattccacaaggaatccaccattttaatcaaatta
taagattgtataaaaattacaagactgggtttaagcagaaagcaagtgct
tagcagttatctgagtgccttaaaaatataaaggcatgtgctgtacctac
tgtcaccaatgtgacatatctgaaatgaaaacaaccaacctttatcaaat
ctctctggttgatgtgctgctaaaccacaaactttgttgcccccccatat
gattctcttatatttgtttgaactttttttaattattatttgttttgctg
atgctaactctgaatatctgattctccttttccaactgtttgggattata
gtctcctgcccaagcccaaatatgatgcaggaaaaaagaaagggtgggaa
ggaggaacggaaagagggaatggaaagaaaaaaccgtaagtaaaggtgtt
gtggtggcattcacctgtaactctcaggccaaggcaggcagacttctgtg
agttatataccaacagggctacatagagagatcctgtctcaaaggctacg
aatgaatgaatgaatgaatcaatcaaacgatccagatatcatgtatcacc
catcactgtcatcaacaattaagtgacccaaggtacgacttaaggctcta
tttccgttgtcacattgcttatcgtggatgtcggctccaaagaactttac
ctggatctcctccagtgcacatatgaaaaaaaaaatcatgtctgaggtac
acggtttttttgcctcgacatatagaactcagcatggactatgaaccctc
ttcatgtagctttcaatgtcaacaaagagagggctgtattcttctaaagc
aatagattaggggtgagagtagtacaagagggtccgggttgaactgggct
gtatgaagaaataaaactggggttgggatgttttgtaggaaacactgtta
ttacactgcttaggaaaaccctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_105617171_105618274
seq2: B6Ng01-043K11.b_40_1117

seq1  GAATTCTTAGGCAAATGGATGGAAATATAACTCTTAGGGAATAAATAATT  50
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  GAATTCTTAGGCTAATGGATGGAAATATAACTCTTAGGGAATCAATAATT  50

seq1  TTAATTAAAGGTAAAGGGTTAGTGGGGAGATGGCTCAGTGGCGAAAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAAAGGTAAAGGGTTAGTGGGGAGATGGCTCAGTGGCGAAAGTGC  100

seq1  TTGGCATGCATGATGCCTTGGGTTTGATCCCTGGGACCCACATAAAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATGCATGATGCCTTGGGTTTGATCCCTGGGACCCACATAAAAAGC  150

seq1  CAGGCATGGCAGCATATATGGATTAATCCCTGTGCTGGGAAGGTGGAGAC  200
      ||||| ||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGGCGTGGCAGCATATATGGATTAATCCCTGTGCTGGGAAGGGGGAGAC  200

seq1  AGGCTCTCTGGGGCTTGCTGGCCAGCCAGTGTTTCTCTGAATCAGTGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTCTGGGGCTTGCTGGCCAGCCAGTGTTTCTCTGAATCAGTGGGC  250

seq1  TTCAGATTCAGTGAGAGACTGTCTCAAAATTCAGGTGGAGAGGATAAGAG  300
      ||||||||| | ||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTCCGGGAGAGACTGTCTCAAAATTCAGGTGGAGAGGATAAGAG  300

seq1  AAAGCTAACTGATGTTGATCGCCGACCTGAAAATGCACACACATGAACTA  350
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAGCTAACTGATGTTGATCCCCGACCTGAAAATGCACACACATGAACTA  350

seq1  AGGGAAAGCAGTAATAAAGTGACTTGAGTGCCCGCTCTGACGACCCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGGAAAGCAGTAATAAAGTGACTTGAGTGCCCGCTCTGACGACCCACGA  400

seq1  GAACTAACTCAGAGACAACCTGTCAGGCCATCTGAATTTCAATCTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAACTCAGAGACAACCTGTCAGGCCATCTGAATTTCAATCTTCAAA  450

seq1  TATGGAGGACAATTCAAAATATAGTTTATTAAAATAGGTTTATATATATT  500
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  TATGGAGGACAATTCAAAATATACCTTATTAAAATAGGTTTATATATATT  500

seq1  TTGCCTGCATCTATTTATATGTGTACCATACGTGTGTCTGGTGACCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGCATCTATTTATATGTGTACCATACGTGTGTCTGGTGACCATGA  550

seq1  GTTCAGAAGTGGGAAGGCATTGAAGCCCGAGTAACTGGAATTACATGCAG  600
      ||||| || |||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAACTGGGAAGGCATTGAAGCCCGAGTAACTGGAATTACATGCAG  600

seq1  TTGAAAAGCCACCATGTGGGTAAACTGAAATGGGTCTTCTAAAAGAGCAA  650
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  TTGAAAAGCCACCATGTGGGTAAACTGACATGGGTCTTCTAAAAGACCAA  650

seq1  TAAATATTCTTAACTGCTGAGCAATCTCCCTAGCCCGGATTCTATTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTCTTAACTGCTGAGCAATCTCCCTAGCCCGGATTCTATTTTAT  700

seq1  ACATGGTCTTATCTCTACATGGTTTACAAATGAATAGTTTTAATATTTAA  750
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  ACATGGTCTTATCTCTACATGGTTTACAAATGAATAGTTTTAATAACTAA  750

seq1  ATACCTTTATTTAACCTCAATTTTCCACTCAAGATGTGTACATTGGATCC  800
      ||||||||||| |||||||||||||||||| | |||||||||||||||||
seq2  ATACCTTTATTCAACCTCAATTTTCCACTC-ACATGTGTACATTGGATCC  799

seq1  AGACTTCATTTACCAATAGTGGGAAAAAAGGGTAACTAAATCTACGGATG  850
      ||||||||||||||| ||||||| |||||| || ||||| ||||||||||
seq2  AGACTTCATTTACCAGTAGTGGG-AAAAAGAGTGACTAACTCTACGGATG  848

seq1  AAATCATAAAATGTTGTTTGCTTGTATACCATTTATTATTTTTAAAACTG  900
       || |||||||||||| ||||||||| |||||| || || ||  | ||||
seq2  -AAGCATAAAATGTTGCTTGCTTGTA-ACCATTCATCATCTT--AGACTG  894

seq1  TTTTCAAATCATTAATGATTTTGAAACTTGTTTTGAAAAACACTTTTAAG  950
      | |   ||||  | |||| | || ||||||| |   || || | ||| ||
seq2  TCT--CAATC-GTCATGA-TGTGGAACTTGTCT--GAAGACGC-TTTCAG  937

seq1  TTAGAAATGAGACAAAATTTTGTGAGAAATTGTTTCCACAATATGAAAGT  1000
      |||| |||||||| | || | ||||||| |  || ||   |||||| |||
seq2  TTAG-AATGAGAC-ATATCTAGTGAGAAGTGATTCCC---ATATGACAGT  982

seq1  ACTGAAAACCAGTTATGGTAGTGCTTTTCTGTAATCCCAGCCC-GGGGGA  1049
       |||||| |    ||||||||||| ||||||||   ||||||| ||||||
seq2  -CTGAAATC--ACTATGGTAGTGC-TTTCTGTA--TCCAGCCCTGGGGGA  1026

seq1  GTT-GGGGCAGAACGGTCACCATGGGTTTCAGGCAAATCTGAGATACATA  1098
      ||| |||||  | |||||| ||| ||| |||||| ||||||||| || ||
seq2  GTTGGGGGCGTAGCGGTCA-CAT-GGTGTCAGGCCAATCTGAGA-AC-TA  1072

seq1  GTGAGA  1104
      ||||||
seq2  GTGAGA  1078

seq1: chr2_105745367_105746351
seq2: B6Ng01-043K11.g_66_1039 (reverse)

seq1  GGAGGGTCTTTCCTAAGCAGTGTGAATGGCAAGTGTTACTCTGACAACCT  50
      ||||||| ||||||||||||||| |||  | |||||| |    | ||| |
seq2  GGAGGGT-TTTCCTAAGCAGTGT-AATAAC-AGTGTTTCCTACAAAACAT  47

seq1  TGTTCACACATTTAATTGTCACTTCTCCAAAGCAGC----TGCAAATAAC  96
            | || ||     | | |||| || | ||||    | |||    |
seq2  CCCAACCCCAGTT-----TTATTTCTTCATA-CAGCCCAGTTCAA--CCC  89

seq1  GGAAACTACTTGAAGT-TTCTCTCCCCTAAATCTGAGTGGAATTAGATGT  145
      |||  || |||| | |  |||| ||||| |||||   | |  ||||| | 
seq2  GGACCCT-CTTGTACTACTCTCACCCCT-AATCT--ATTGCTTTAGAAG-  134

seq1  ATTTGTACCTTATTTTTCTAGTAATTTGAATCTGAATGGAGAGGGTTCCT  195
      | |    || | | ||| | |  |||  || ||  ||| ||||||||| |
seq2  AATACAGCCCTCTCTTTGTTGACATTGAAAGCTACATGAAGAGGGTTCAT  184

seq1  ACTACACTATGAGTTTTATTTGTGGTAGAAAAAAAACCATGTAATTCAGA  245
      | | ||   |||||| ||| ||| |  | ||||||||| ||||  |||||
seq2  AGTCCATGCTGAGTTCTATATGTCGAGGCAAAAAAACCGTGTACCTCAGA  234

seq1  CCTGATTTTTTTTTTCATATGTGAACTGGAGGAGGAATTGGTTAAGTGAT  295
      | ||||||||||||||||||||| ||||||||||     ||| ||||  |
seq2  CATGATTTTTTTTTTCATATGTGCACTGGAGGAGATCCAGGTAAAGTTCT  284

seq1  TTCTAGAAGACATCCAAGATAAGCAATGTTTGAACGGAAAAAGAGACCTA  345
      ||  ||  |||||||| ||||||||||||   |||||||| |||| | ||
seq2  TTGGAGCCGACATCCACGATAAGCAATGTGACAACGGAAATAGAGCCTTA  334

seq1  AGTCAATACTTGTGTCACTTAATTACTGCTGACAGTGATGGGTGATACAT  395
      ||||    |||| |||||||||||  || |||||||||||||||||||||
seq2  AGTCGTACCTTGGGTCACTTAATTGTTGATGACAGTGATGGGTGATACAT  384

seq1  GATATATGGATTGATTGATTGATTCATTCATTCATTCATTCATTTATTTT  445
      ||||| ||||| | ||||||||||||||||||||||||||| |    |||
seq2  GATATCTGGATCGTTTGATTGATTCATTCATTCATTCATTCGTAGCCTTT  434

seq1  GAGACAGGATCTCTCTATGTAGCCCTGTTGGTATATAACTCACAGAAGTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGATCTCTCTATGTAGCCCTGTTGGTATATAACTCACAGAAGTC  484

seq1  TGCCTGCCTTTGCCTGAGACTTACAGGTGAATGCCACCACAACACCTTTA  545
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  TGCCTGCCTTGGCCTGAGAGTTACAGGTGAATGCCACCACAACACCTTTA  534

seq1  CTTACGGTTTTTTCTTTCCATTCCCTCTTTCCCTTCCTCCTTCCCACCCT  595
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTACGGTTTTTTCTTTCCATTCCCTCTTTCCGTTCCTCCTTCCCACCCT  584

seq1  TTCTTTTTTCCTGCATCATATTTGGGCTTGGGCAGGAGACTATAATCCCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTCCTGCATCATATTTGGGCTTGGGCAGGAGACTATAATCCCA  634

seq1  AACAGTTGGAAAAGGAGAATCAGATATTCAGAGTTAGCATCAGCAAAACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTGGAAAAGGAGAATCAGATATTCAGAGTTAGCATCAGCAAAACA  684

seq1  AATAATAATTAAAAAAACTTCAAACAAATATAAGAGAATCATATGGGGGG  745
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATAATAATTAAAAAAAGTTCAAACAAATATAAGAGAATCATATGGGGGG  734

seq1  GCAACAAAGTTTGTGGTTTAGCAGCACATCAACCAGAGAGATTTGATAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAAAGTTTGTGGTTTAGCAGCACATCAACCAGAGAGATTTGATAAA  784

seq1  GGTTGCTTGTTTTCATTTCAGATATGTCACACTGGTGACAGTAGGTACAG  845
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTTGGTTGTTTTCATTTCAGATATGTCACATTGGTGACAGTAGGTACAG  834

seq1  CACATGCCTTTATATTTTTAAGGCACTCAGATAACTGCTAAGCACTTGCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCCTTTATATTTTTAAGGCACTCAGATAACTGCTAAGCACTTGCT  884

seq1  TTCTGCTTAAACCCAGTCTTGTAATTTTTATACAATCTTATAATTTTATT  945
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCTGCTTAAACCCAGTCTTGTAATTTTTATACAATCTTATAATTTGATT  934

seq1  AAAATGGTGGATTCCTTCTCTAATAGCAAATAAAGAATTC  985
      ||||||||||||||||| |  |||||||||||||||||||
seq2  AAAATGGTGGATTCCTTGTGGAATAGCAAATAAAGAATTC  974