BAC Information

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BAC

Clone NameB6Ng01-044D01
Chromosome2 (Build37)
Map Location 151,155,557 - 151,156,619
singlet/doubletsinglet
Overlap genenone
Upstream gene3300002I08Rik, LOC100043832, OTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik
Downstream geneLOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044D01.bB6Ng01-044D01.g
ACCDH870016DH870017
length1,2301,066
definitionDH870016|Mus musculus domesticus DNA, BAC clone: B6Ng01-044D01, 5' end.DH870017|Mus musculus domesticus DNA, BAC clone: B6Ng01-044D01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaatattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaatcatctggaataacaaaaaacct
aggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcac
catgcctgacctaaagctttactacagagcaattgtggtaaaaactgcat
ggtactggtatagagacagacaagtagaccaatggaatagaattgaagac
ccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagc
taaaaccatccagtggaagaaagacagcattttcaacaaatggtgctggc
acaactgggttgttatcatgtagaagaatgcgaatcgatccatacttatc
tccttgtactagtcaaatctaaatggatcaagacttcacataaaaccaga
gacactgaactataaggagaaagtgggaaaagcgtgaagatatgggcaca
ggaaattctgaacaaacgcaatggctggctgtagatcgaatgacatggac
tatgaactcagttctgcagcagacgtctagactaagacacccacagatag
aagacttacattctaaattcagatggggca
gaattctatgtggacaaacatacagtagtttgtataccttctgcactaaa
cagaatccttttgaccaggatggaggaggcacacagctgcctggccttgg
ttaagctttctactgtggctgtctgcatccataccaggtttgtcagcctg
tggggagcccacctgctcccgtggtattggagagcaacatgacatgggga
agggacttcaggtgacattgaaatatgggtaattaatctttgaccatcca
ggaaggccatgtgttaaaatgaatctctcgctcattcctcctgagtgacc
gtttttccccccatcatcagccctcctttcccattaattcttggcctcca
ggcaccattttctattggatagtctcattcaactttctcagaagggatat
tctgtgggaattgctttcttagatgacaaatgtgttaagtccgccaaccc
taaaatatttatatttgagaaggatatttgaaataatgaagataaaatgt
agaaatacatgcaggcactccacctgtttgtttccacaagcatctccact
gttttcatggctcactggtaggtgtctctttgtggccataaggcatagtc
tgtgaaagcagtttgcaatttgattttcttggtctcttgctttttcagaa
atgctctgacacacctttgtgctgtctgatgaattattccttaagtgaat
tctgcaggggttttgattgcgtggtcctggctagtaaggcatgcacatag
gtccacagatggtggatcctcagagggaagtctgatatgacttcatttct
ccatgttgtatgtgatagtgcttttctttcagaagttgtgtaagcctttg
tcactcagacatgttcctgagagtcacctaaaggtgaactatacctagag
tgaatcccagtatggaagtctactgtgtgctgtggagcaaatggctatct
gaagagcaaagtacacatgtgatttcagagacaaccctgagaataaacgt
taatcctgaaactaccatatactgaaaagtattggcaattctgggatgtg
tagatttggttcagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_151155557_151156619
seq2: B6Ng01-044D01.g_66_1131

seq1  GAATTCTATGTGGACAAACATACAGTAGTTTGTATACCTTCTGCACTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTGGACAAACATACAGTAGTTTGTATACCTTCTGCACTAAA  50

seq1  CAGAATCCTTTTGACCAGGATGGAGGAGGCACACAGCTGCCTGGCCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCCTTTTGACCAGGATGGAGGAGGCACACAGCTGCCTGGCCTTGG  100

seq1  TTAAGCTTTCTACTGTGGCTGTCTGCATCCATACCAGGTTTGTCAGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTTTCTACTGTGGCTGTCTGCATCCATACCAGGTTTGTCAGCCTG  150

seq1  TGGGGAGCCCACCTGCTCCCGTGGTATTGGAGAGCAACATGACATGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGCCCACCTGCTCCCGTGGTATTGGAGAGCAACATGACATGGGGA  200

seq1  AGGGACTTCAGGTGACATTGAAATATGGGTAATTAATCTTTGACCATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTTCAGGTGACATTGAAATATGGGTAATTAATCTTTGACCATCCA  250

seq1  GGAAGGCCATGTGTTAAAATGAATCTCTCGCTCATTCCTCCTGAGTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCCATGTGTTAAAATGAATCTCTCGCTCATTCCTCCTGAGTGACC  300

seq1  GTTTTTCCCCCCATCATCAGCCCTCCTTTCCCATTAATTCTTGGCCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCCCCCATCATCAGCCCTCCTTTCCCATTAATTCTTGGCCTCCA  350

seq1  GGCACCATTTTCTATTGGATAGTCTCATTCAACTTTCTCAGAAGGGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCATTTTCTATTGGATAGTCTCATTCAACTTTCTCAGAAGGGATAT  400

seq1  TCTGTGGGAATTGCTTTCTTAGATGACAAATGTGTTAAGTCCGCCAACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGAATTGCTTTCTTAGATGACAAATGTGTTAAGTCCGCCAACCC  450

seq1  TAAAATATTTATATTTGAGAAGGATATTTGAAATAATGAAGATAAAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTTATATTTGAGAAGGATATTTGAAATAATGAAGATAAAATGT  500

seq1  AGAAATACATGCAGGCACTCCACCTGTTTGTTTCCACAAGCATCTCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATACATGCAGGCACTCCACCTGTTTGTTTCCACAAGCATCTCCACT  550

seq1  GTTTTCATGGCTCACTGGTAGGTGTCTCTTTGTGGCCATAAGGCATAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATGGCTCACTGGTAGGTGTCTCTTTGTGGCCATAAGGCATAGTC  600

seq1  TGTGAAAGCAGTTTGCAATTTGATTTTCTTGGTCTCTTGCTTTTTCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGCAGTTTGCAATTTGATTTTCTTGGTCTCTTGCTTTTTCAGAA  650

seq1  ATGCTCTGACACACCTTTGTGCTGTCTGATGAATTATTCCTTAAGTGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTGACACACCTTTGTGCTGTCTGATGAATTATTCCTTAAGTGAAT  700

seq1  TCTGCAGGGG-TTTGATTGCGTGGTCCTGGCTAGTAAGGCATGCACATAG  749
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGGGGTTTTGATTGCGTGGTCCTGGCTAGTAAGGCATGCACATAG  750

seq1  GTCCACAGATGGTGGATCCTCAGAGGGAAGTCTGATATGACTTCATTTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAGATGGTGGATCCTCAGAGGGAAGTCTGATATGACTTCATTTCT  800

seq1  CCATGTTGTATGTGATAGTGCTTTTCTTTCAGAAGTTGTGTAAGCCTTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTGTATGTGATAGTGCTTTTCTTTCAGAAGTTGTGTAAGCCTTTG  850

seq1  TCACTCAGACATGTTCCTGAGAGTCACCTAAAGGTGAACTATACCTAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAGACATGTTCCTGAGAGTCACCTAAAGGTGAACTATACCTAGAG  900

seq1  TGAATCCAAGTATGGAAGTCTACTGTGTGCTGTGGAGCAAATGGCTATCT  949
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCCAGTATGGAAGTCTACTGTGTGCTGTGGAGCAAATGGCTATCT  950

seq1  GAAGAGCAGAGTACACCATGTGATTACAGAGACAACCC-GAGAATAAACG  998
      |||||||| |||||| ||||||||| |||||||||||| |||||||||||
seq2  GAAGAGCAAAGTACA-CATGTGATTTCAGAGACAACCCTGAGAATAAACG  999

seq1  TTAATCCTGAGACTACCATATACTGAAGAGTATTGGCAA-TCTGGGATGT  1047
      |||||||||| |||||||||||||||| ||||||||||| ||||||||||
seq2  TTAATCCTGAAACTACCATATACTGAAAAGTATTGGCAATTCTGGGATGT  1049

seq1  GT-GATTTGGTTCAGTG  1063
      || ||||||||||||||
seq2  GTAGATTTGGTTCAGTG  1066