BAC Information

Click to search

BAC

Clone NameB6Ng01-044D05
Chromosome2 (Build37)
Map Location 6,751,493 - 6,895,190
singlet/doubletdoublet
Overlap geneCugbp2
Upstream geneCdc123, Nudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387, LOC100040659
Downstream geneLOC100040648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044D05.bB6Ng01-044D05.g
ACCDH870024DH870025
length1,2001,069
definitionDH870024|Mus musculus domesticus DNA, BAC clone: B6Ng01-044D05, 5' end.DH870025|Mus musculus domesticus DNA, BAC clone: B6Ng01-044D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,751,493 - 6,752,716)(6,894,111 - 6,895,190)
sequence
gaattcatatgttggctgtgggcagagtgaaaattacattcagaaagtca
atggaaaagacatttaaaacctgtgtacagtatttttcttcttgtggtgt
agtgaagggtctgcaacagtcaaagcttacaaaacttataaaggctggtt
tggggctattctgtgttttgttttggttttgttgttgtcgtttcctgttt
taatgatggaaaatactctttctctctaaaatgctttaataggaggaata
taaatgatatggcaaacaatccttaaaaattcttttctggtgaggaaata
ttcacatgcttacactcagaaaatcgtgagagaaataaacaatgaattta
gcaattccaaccatctttttctctacaagcgtaatttatttcttttctcc
tcttttctttttatatcttctctccaggaactcagtcaaatgttagctta
gtggaagcagctacagtcaaagttaaattttatttaccaaattctttgca
aagtacagggattctcattcacttattagtcctacgggctctgttggacg
ctattagtaaattgcctgaaatgagtcaagaaagaaagggtaaagagagc
ctgggcttacacggcagtgatagtacttcagggaccacaggagccacgaa
aattagcactgagccctcatctccaggacagaaaagaaatcaggacagtc
ttaatgagagtcaggcagtgcccctaaggagaaccttaatatactttatc
ttgcctttatattttcattccagtgtcattaggtgcagtgaaccaactaa
cacttattgagagcatactatgtgcctaactctgggccaagcactctggg
aagactcaaattacatacagctgcagttggcagatgtgacttgctgacca
aaccagagcctcctcagaacttgttagaaaagcaagctctcagccccacc
tggacccactgaagctgcagcctgcagtagtctgggatttggttttttgt
tggtttgaacaaaacaaaacaaaacaaaccaacacaaaccctgcagtgac
tgtggagcactggctctagcactctggggagcatgaaaatgtgaagcagc
caagctgagaagttaccagcgccatgatctgtatctcactgaggttcgac
ctaggaatgggtggtgccttcaaataactaagcattggagagtaccttct


gaattcacagaaatgttttatttcatacctcatcccgagaaataccgttt
acccatcctctggtcttaaaattcttaacacacacagacctttttcttag
aaaaatatctctacctcacctataattccagaatgtagaaaagctgaggc
aggaaaatggaggatttgaggccagcctgatctacatatcaagtcttttt
cttcagtaaggaaagataagaaaatgaattttttgagtgtgtgccaaaga
aatcgtgaaaatatatgtttgtgggtttctatttcacattagaaatggaa
ctttatgtttagttgcctctgactttaaatgtaaaattcttagagatact
tccaaattgtctagcttttggtatctcttaggaataagtggttatgtttt
ctttctttttcttgttttacttgcatatcttagaatttaatatgcttaga
ttctcattcactcagttcctctgagccttggttttctcatgtgaacgatg
gccataatcatcttgtgaggaacaaaagataaaatgtggataaggttctg
ggcaaagggattaaagcatagcaagtacatgggtctttgtggttgctata
gaataaaaatgcataatgaatattaaggcaaatacatgattataaactac
aaccaagtctcttccaggatgtgtaatattgagtatatttgagtaacact
agtgtctcagtaggttagtatctttgatactaaaggtctgtcctgtgtct
gagcttgctaccagtctaccccatcacagccatcagagtgatgcatggtc
atctcctgggtcaccttaaggttgtaaaggaccttaagaggtgattcatc
ataactgctcattctcagggtgcagagactttgtcaaatcatctctttcc
aggctcctgactcaattggataagaagtgaggttatctttaattcccagg
gtcatggtgtcaaattatctggatgttcaagtcagtcattcagtgatttc
agttatattcatattgatggcaagaccttttaaaagtctctagggactgg
tgcatattcacttatggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_6751493_6752716
seq2: B6Ng01-044D05.b_43_1242

seq1  GAATTCATATGTTGGCTGTGGGCAGAGTGAAAATTACATTCAGAAAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGTTGGCTGTGGGCAGAGTGAAAATTACATTCAGAAAGTCA  50

seq1  ATGGAAAAGACATTTAAAACCTGTGTACAGTATTTTTCTTCTTGTGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAGACATTTAAAACCTGTGTACAGTATTTTTCTTCTTGTGGTGT  100

seq1  AGTGAAGGGTCTGCAACAGTCAAAGCTTACAAAACTTATAAAGGCTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGGGTCTGCAACAGTCAAAGCTTACAAAACTTATAAAGGCTGGTT  150

seq1  TGGGGCTATTCTGTGTTTTGTTTTGGTTTTGTTGTTGTCGTTTCCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTATTCTGTGTTTTGTTTTGGTTTTGTTGTTGTCGTTTCCTGTTT  200

seq1  TAATGATGGAAAATACTCTTTCTCTCTAAAATGCTTTAATAGGAGGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGGAAAATACTCTTTCTCTCTAAAATGCTTTAATAGGAGGAATA  250

seq1  TAAATGATATGGCAAACAATCCTTAAAAATTCTTTTCTGGTGAGGAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATATGGCAAACAATCCTTAAAAATTCTTTTCTGGTGAGGAAATA  300

seq1  TTCACATGCTTACACTCAGAAAATCGTGAGAGAAATAAACAATGAATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGCTTACACTCAGAAAATCGTGAGAGAAATAAACAATGAATTTA  350

seq1  GCAATTCCAACCATCTTTTTCTCTACAAGCGTAATTTATTTCTTTTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCCAACCATCTTTTTCTCTACAAGCGTAATTTATTTCTTTTCTCC  400

seq1  TCTTTTCTTTTTATATCTTCTCTCCAGGAACTCAGTCAAATGTTAGCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTTTATATCTTCTCTCCAGGAACTCAGTCAAATGTTAGCTTA  450

seq1  GTGGAAGCAGCTACAGTCAAAGTTAAATTTTATTTACCAAATTCTTTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGCAGCTACAGTCAAAGTTAAATTTTATTTACCAAATTCTTTGCA  500

seq1  AAGTACAGGGATTCTCATTCACTTATTAGTCCTACGGGCTCTGTTGGACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAGGGATTCTCATTCACTTATTAGTCCTACGGGCTCTGTTGGACG  550

seq1  CTATTAGTAAATTGCCTGAAATGAGTCAAGAAAGAAAGGGTAAAGAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGTAAATTGCCTGAAATGAGTCAAGAAAGAAAGGGTAAAGAGAGC  600

seq1  CTGGGCTTACACGGCAGTGATAGTACTTCAGGGACCACAGGAGCCACGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTACACGGCAGTGATAGTACTTCAGGGACCACAGGAGCCACGAA  650

seq1  AATTAGCACTGAGCCCTCATCTCCAGGACAGAAAAGAAATCAGGACAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCACTGAGCCCTCATCTCCAGGACAGAAAAGAAATCAGGACAGTC  700

seq1  TTAATGAGAGTCAGGCAGTGCCCCTAAGGAGAACCTTAATATACTTTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAGAGTCAGGCAGTGCCCCTAAGGAGAACCTTAATATACTTTATC  750

seq1  TTGCCTTTATA-TTTCATTCCAGTGTCATTAGGTGCAGTGAACCAACTAA  799
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTATATTTTCATTCCAGTGTCATTAGGTGCAGTGAACCAACTAA  800

seq1  CACTTATTGAGAGCATACTATGTGCCTAACTCTGGGCCAAGCACTCTGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATTGAGAGCATACTATGTGCCTAACTCTGGGCCAAGCACTCTGGG  850

seq1  AAGACTCAAATTACATACAGCTGCAGTTGGCAGATGTGACTTGCTGACCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCAAATTACATACAGCTGCAGTTGGCAGATGTGACTTGCTGACCA  900

seq1  AACCAGAGCCTCCTCAGAACTTGTTAGAAAAGCAAGCTCTCAGCCCCACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAGCCTCCTCAGAACTTGTTAGAAAAGCAAGCTCTCAGCCCCACC  950

seq1  TGGACCCACTGAAGCTGCAGCCTGCAGGTAGTCTTGGGATTTGGTTTTTT  999
      |||||||||||||||||||||||||| |||||| |||||||||| |||||
seq2  TGGACCCACTGAAGCTGCAGCCTGCA-GTAGTC-TGGGATTTGG-TTTTT  997

seq1  TGTTGGTTTTTGAACAAAACAAAAACAAAACAAACCAACACAAACCCTGC  1049
      ||||||  |||||||||||| |||||||||||||||||||||||||||||
seq2  TGTTGG--TTTGAACAAAAC-AAAACAAAACAAACCAACACAAACCCTGC  1044

seq1  AGTGACTGTGGAAGCACTGGCCTCTAGCATCTCTGGGGAGCCATGAAAAT  1099
      ||||||||||| |||||||| |||||||| |||||||||| |||||||||
seq2  AGTGACTGTGG-AGCACTGG-CTCTAGCA-CTCTGGGGAG-CATGAAAAT  1090

seq1  GTGAAAAGGCAGCAAAGCTGAGAAGTACACAGCGCACAAGATCTGGTAAT  1149
      |||||   ||||| ||||||||||||   |||||| || ||||||   ||
seq2  GTGAA---GCAGCCAAGCTGAGAAGTTACCAGCGC-CATGATCTG--TAT  1134

seq1  CTCACTGAAGGTTCAGACTCTAGGAATGTGTTGTTGCTTTTCAAAATAAA  1199
      ||||||| |||||| ||| ||||||||| || ||  |  |||||   | |
seq2  CTCACTG-AGGTTC-GAC-CTAGGAATGGGTGGTGCC--TTCAA---ATA  1176

seq1  ACTAGAGCATTTGAGAGTACCTTCT  1224
      |||| |||||| |||||||||||||
seq2  ACTA-AGCATTGGAGAGTACCTTCT  1200


seq1: chr2_6894111_6895190
seq2: B6Ng01-044D05.g_67_1135 (reverse)

seq1  GTCCAATAAGTTGAATATGCACAGTTCCCTAGAAGAACTTTTTAAAAGGT  50
      |||| ||||| |||||||||||   ||||||| |||   |||||||||||
seq2  GTCC-ATAAG-TGAATATGCACCAGTCCCTAG-AGA--CTTTTAAAAGGT  45

seq1  CTTTGCCATCAATATTGAATATAACTGATAATCACCTGAATGACTGACTT  100
      | |||||||||||| ||||||||||||| ||||| |||||||||||||||
seq2  C-TTGCCATCAATA-TGAATATAACTGA-AATCA-CTGAATGACTGACTT  91

seq1  GAACATCCAAGATAATTTGACACCATGACCCTGGGAATTAAGGATAACCT  150
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  GAACATCC-AGATAATTTGACACCATGACCCTGGGAATTAAAGATAACCT  140

seq1  CACTTCTTATCCAATTGAGTCAGGAGCCTGGGAAAGAGATGATTTGACAA  200
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CACTTCTTATCCAATTGAGTCAGGAGCCT-GGAAAGAGATGATTTGACAA  189

seq1  AGTCTCTGCACCCTGAGAATGAGCAGTTATGATGAATCACCTCTTAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGCACCCTGAGAATGAGCAGTTATGATGAATCACCTCTTAAGGT  239

seq1  CCTTTACAACCTTAAGGTGACCCAGGAGATGACCATGCATCACTCTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACAACCTTAAGGTGACCCAGGAGATGACCATGCATCACTCTGATG  289

seq1  GCTGTGATGGGGTAGACTGGTAGCAAGCTCAGACACAGGACAGACCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGATGGGGTAGACTGGTAGCAAGCTCAGACACAGGACAGACCTTTA  339

seq1  GTATCAAAGATACTAACCTACTGAGACACTAGTGTTACTCAAATATACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAAGATACTAACCTACTGAGACACTAGTGTTACTCAAATATACTC  389

seq1  AATATTACACATCCTGGAAGAGACTTGGTTGTAGTTTATAATCATGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTACACATCCTGGAAGAGACTTGGTTGTAGTTTATAATCATGTATT  439

seq1  TGCCTTAATATTCATTATGCATTTTTATTCTATAGCAACCACAAAGACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAATATTCATTATGCATTTTTATTCTATAGCAACCACAAAGACCC  489

seq1  ATGTACTTGCTATGCTTTAATCCCTTTGCCCAGAACCTTATCCACATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTGCTATGCTTTAATCCCTTTGCCCAGAACCTTATCCACATTTT  539

seq1  ATCTTTTGTTCCTCACAAGATGATTATGGCCATCGTTCACATGAGAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGTTCCTCACAAGATGATTATGGCCATCGTTCACATGAGAAAAC  589

seq1  CAAGGCTCAGAGGAACTGAGTGAATGAGAATCTAAGCATATTAAATTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTCAGAGGAACTGAGTGAATGAGAATCTAAGCATATTAAATTCTA  639

seq1  AGATATGCAAGTAAAACAAGAAAAAGAAAGAAAACATAACCACTTATTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGCAAGTAAAACAAGAAAAAGAAAGAAAACATAACCACTTATTCC  689

seq1  TAAGAGATACCAAAAGCTAGACAATTTGGAAGTATCTCTAAGAATTTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGATACCAAAAGCTAGACAATTTGGAAGTATCTCTAAGAATTTTAC  739

seq1  ATTTAAAGTCAGAGGCAACTAAACATAAAGTTCCATTTCTAATGTGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGTCAGAGGCAACTAAACATAAAGTTCCATTTCTAATGTGAAAT  789

seq1  AGAAACCCACAAACATATATTTTCACGATTTCTTTGGCACACACTCAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCACAAACATATATTTTCACGATTTCTTTGGCACACACTCAAAA  839

seq1  AATTCATTTTCTTATCTTTCCTTACTGAAGAAAAAGACTTGATATGTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTTTCTTATCTTTCCTTACTGAAGAAAAAGACTTGATATGTAGA  889

seq1  TCAGGCTGGCCTCAAATCCTCCATTTTCCTGCCTCAGCTTTTCTACATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTGGCCTCAAATCCTCCATTTTCCTGCCTCAGCTTTTCTACATTC  939

seq1  TGGAATTATAGGTGAGGTAGAGATATTTTTCTAAGAAAAAGGTCTGTGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTATAGGTGAGGTAGAGATATTTTTCTAAGAAAAAGGTCTGTGTG  989

seq1  TGTTAAGAATTTTAAGACCAGAGGATGGGTAAACGGTATTTCTCGGGATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGAATTTTAAGACCAGAGGATGGGTAAACGGTATTTCTCGGGATG  1039

seq1  AGGTATGAAATAAAACATTTCTGTGAATTC  1080
      ||||||||||||||||||||||||||||||
seq2  AGGTATGAAATAAAACATTTCTGTGAATTC  1069


| Home | SequenceCutter | Blast | Download |