BAC Information

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BAC

Clone NameB6Ng01-044H20
Chromosome2 (Build37)
Map Location 20,833,732 - 20,958,721
singlet/doubletdoublet
Overlap geneArhgap21, LOC433408
Upstream geneLOC100041302, LOC433406, LOC654360, LOC667609, Etl4
Downstream geneLOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044H20.bB6Ng01-044H20.g
ACCDH870226DH870227
length1,1701,082
definitionDH870226|Mus musculus domesticus DNA, BAC clone: B6Ng01-044H20, 5' end.DH870227|Mus musculus domesticus DNA, BAC clone: B6Ng01-044H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,833,732 - 20,835,011)(20,957,622 - 20,958,721)
sequence
gaattcacaaagctctgaagtgacagcaagggatattttaacccctatga
tttgaatacctacaaactgctctacacttggccttgagaagatcacccca
gctgctaccacctccacacagtgcgatgcacaggagcgtttggagaaaag
gtggtggggtttaatggcttacctcctctgtttccattctcttcatcctg
caaaataaaaccacaaattattaacatataataaataccaactagaatct
tacagcagcaccgttgtcagaagggtggaacgttcccaagaaagaaaggc
tgtgagtgaagccgagtgcgggaaggaaatccgcagttaccaatctgaaa
tgctatgtgtggaaattcctaactgcactatttaggtggaggcacaaaac
aagcagttggtttgctatttactgtagtgcagtgaccatctgggctgagc
ttttctgggctatgacaggttgaagagctaaccgctgcatattaagttct
tgtactcaactggaacttcatctgtttggcatctttaggtccttcttcca
tgctgcctatgttgagaaatcagtaaggcaactttaaaaaaaaaatagta
tgaaaacacacacaaggcgagcatttgttgagccttgaccaaaaaaaagg
ctaccatgcactacagaaatgaaaatggagctttggctgaaggctggtaa
tttattacataactcttgacctttattttggctgcccaaatgttgttttt
cttcttctggttataagctcagttctgagactaatcgttgccagctaagt
gacataatagagacattgttgctatcaatcgtacactttctaaaaactat
aaaacactaaaaatggttttaagttctttggtggctgcggtgttatagct
cggcagtacagttctaacctagcaagtgtgatgtgtaaagcccaggtcta
ctacacacaacacatacacacacacacacacacacacacacacacacaca
cacacacagtcttgagtgattataaaatttcacattatctgcaggagtat
ctatcccaaaccacagtatccagctatgctgaagtgtactgtcctcagtc
cattccaattgttctgggagccagcatctcgttgtatgacaagtggatgt
ctcaggtcaagtattgagca
gaattcaaagacataaaattcttgtgtcttacatgtcagtggggaatgca
gtgtcctttttgttggctttggttgggttgtgttcttgggacagaatctc
acactgtagctcaggctggcttcagatttataaccatacttctgcctcag
tctcctaggagctgggattacagtttatatacctgatttagaatcctatt
tcttatagagaaatttctattaagagatctttgtggtctctgataactac
tataaaaagataagatttatgttttccaaaatgcatctctaggtaaactg
ctctgcctacatgtgtttctcaccctttctgtctcacagttctgcagaca
ggaataaaatatgcataatattcatgctgatggagggtcctaataacctt
ctgggttgtcttacattcgtggtttagtctcggctctctttattctttgc
aatagcaacagggagagcaagcttgctgctgggaaggaatacatttgtaa
atgtaaacctttctaccattattactccaggcagaagagaaagagcacca
agtgcagccaccattccccacaagttttcatttgcatattcagggggtag
agatgggtacacggggaagcccaggagttaaaaaaaaattggtaatgaac
ctggtttaacaatggagtgataattggttcaaggtacttaaaaagatcaa
aatgactttgtaatatgacgatgttaacatcctattaaggatgttcataa
gttagtactgttataaatcatatgttccacaaaaagtactttaaaattat
ctttccatggaactagtctggcttactaataaatggatgggccaaacatg
gtggtttagaagtctttgatcaatatcctgtttctatatcctttgtagta
tttatttcagcgtacttcattaaatactaaccactgtcaacagtccaaaa
agaaagtgatctgtttaaatatttgtttggtttgaagagcgggcaaacac
actgagatgtgccaacattcttgagtctggcatagttgacgtgtcgtgat
ccagaaagtgcttgagccctcctctccaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_20833732_20835011
seq2: B6Ng01-044H20.b_42_1211

seq1  GAATTCACAAAGCTCTGAAGTGACAGCAAGGGATATTTTAACCCCTATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAAGCTCTGAAGTGACAGCAAGGGATATTTTAACCCCTATGA  50

seq1  TTTGAATACCTACAAACTGCTCTACACTTGGCCTTGAGAAGATCACCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATACCTACAAACTGCTCTACACTTGGCCTTGAGAAGATCACCCCA  100

seq1  GCTGCTACCACCTCCACACAGTGCGATGCACAGGAGCGTTTGGAGAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTACCACCTCCACACAGTGCGATGCACAGGAGCGTTTGGAGAAAAG  150

seq1  GTGGTGGGGTTTAATGGCTTACCTCCTCTGTTTCCATTCTCTTCATCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGGGTTTAATGGCTTACCTCCTCTGTTTCCATTCTCTTCATCCTG  200

seq1  CAAAATAAAACCACAAATTATTAACATATAATAAATACCAACTAGAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAAACCACAAATTATTAACATATAATAAATACCAACTAGAATCT  250

seq1  TACAGCAGCACCGTTGTCAGAAGGGTGGAACGTTCCCAAGAAAGAAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAGCACCGTTGTCAGAAGGGTGGAACGTTCCCAAGAAAGAAAGGC  300

seq1  TGTGAGTGAAGCCGAGTGCGGGAAGGAAATCCGCAGTTACCAATCTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGAAGCCGAGTGCGGGAAGGAAATCCGCAGTTACCAATCTGAAA  350

seq1  TGCTATGTGTGGAAATTCCTAACTGCACTATTTAGGTGGAGGCACAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGTGTGGAAATTCCTAACTGCACTATTTAGGTGGAGGCACAAAAC  400

seq1  AAGCAGTTGGTTTGCTATTTACTGTAGTGCAGTGACCATCTGGGCTGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTTGGTTTGCTATTTACTGTAGTGCAGTGACCATCTGGGCTGAGC  450

seq1  TTTTCTGGGCTATGACAGGTTGAAGAGCTAACCGCTGCATATTAAGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGGCTATGACAGGTTGAAGAGCTAACCGCTGCATATTAAGTTCT  500

seq1  TGTACTCAACTGGAACTTCATCTGTTTGGCATCTTTAGGTCCTTCTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCAACTGGAACTTCATCTGTTTGGCATCTTTAGGTCCTTCTTCCA  550

seq1  TGCTGCCTATGTTGAGAAATCAGTAAGGCAACTTTAAAAAAAAAATAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTATGTTGAGAAATCAGTAAGGCAACTTTAAAAAAAAAATAGTA  600

seq1  TGAAAACACACACAAGGCGAGCATTTGTTGAGCCTTGACCAAAAAAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACACACACAAGGCGAGCATTTGTTGAGCCTTGACCAAAAAAAAGG  650

seq1  CTACCATGCACTACAGAAATGAAAATGGAGCTTTGGCTGAAGGCTGGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATGCACTACAGAAATGAAAATGGAGCTTTGGCTGAAGGCTGGTAA  700

seq1  TTTATTACATAACTCTTGACCTTTATTTTGGCTGCCCAAATGTTGTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTACATAACTCTTGACCTTTATTTTGGCTGCCCAAATGTTGTTTTT  750

seq1  CTTCTTCTGGTTATAAGCTCAGTTCTGAGACTAATCGTTGCCAGCTAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTGGTTATAAGCTCAGTTCTGAGACTAATCGTTGCCAGCTAAGT  800

seq1  GACATAATAGAGACATTGTTGCTATCAATCGTACACTTTCTAAAAACTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAATAGAGACATTGTTGCTATCAATCGTACACTTTCTAAAAACTAT  850

seq1  AAAACACTAAAAATGGTTTTAAGTTCTTTGGTGGCTGCGGTGTTATAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTAAAAATGGTTTTAAGTTCTTTGGTGGCTGCGGTGTTATAGCT  900

seq1  CGGCAGTACAGTTCTAACCTAGCAAGTGTGATGTGTAAAGCCCCAGGTCT  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CGGCAGTACAGTTCTAACCTAGCAAGTGTGATGTGTAAAG-CCCAGGTCT  949

seq1  ACTACACACAAACCACACACACACACACACACACACACACACACACACAC  1000
      |||||||||||  |||| ||||||||||||||||||||||||||||||||
seq2  ACTACACACAA--CACATACACACACACACACACACACACACACACACAC  997

seq1  ACACACACACAGTCTTTGAGTGAATTAATAAAATTTCACAATTATCTGCA  1050
      |||||||||||||| ||||||||  | |||||||||||| ||||||||||
seq2  ACACACACACAGTC-TTGAGTGA--TTATAAAATTTCAC-ATTATCTGCA  1043

seq1  GGAGTATCTATCCCAAACCACAGTATCACAGCTATGCTG-AGTGTTACTG  1099
      ||||||||||||||||||||||||||| ||||||||||| |||| |||||
seq2  GGAGTATCTATCCCAAACCACAGTATC-CAGCTATGCTGAAGTG-TACTG  1091

seq1  TCCTCAGGTCCCATTCCAAATGTTTCCTGGGAGCAAGGCACTGCTGTTGT  1149
      |||||||   ||||||||| ||||  |||||||| ||   ||   |||||
seq2  TCCTCAG--TCCATTCCAATTGTT--CTGGGAGCCAGCATCT--CGTTGT  1135

seq1  ATGACTAGT-GATGTGCTCAAGGTCACAAAGTTATTGA--AAGCCAGACA  1196
      ||||| ||| ||||| ||| |||||   ||| ||||||  |         
seq2  ATGACAAGTGGATGT-CTC-AGGTC---AAG-TATTGAGCA---------  1170

seq1  GGGACTACAGGGAATAGACTCAAACTCTGCGGGCTCCACAAATGCTTTCT  1246
                                                        
seq2  --------------------------------------------------  1170

seq1  AATACAGATATATTTTTTTAACATGTATTGAGCA  1280
                                        
seq2  ----------------------------------  1170

seq1: chr2_20957622_20958721
seq2: B6Ng01-044H20.g_67_1148 (reverse)

seq1  TGCCTGGAGGAGAGGTGCTCAAGACACTTTCTGGAATCACTGACACGTCA  50
      |||||||||  |||| ||||||| |||||||||| ||||| |||||||| 
seq2  TGCCTGGAGAGGAGG-GCTCAAG-CACTTTCTGG-ATCAC-GACACGTC-  45

seq1  AACTATGCCAAGACCTCAAAGAATGTTGGCAACATCTTCAGTGTGTTTGC  100
      ||||||||| ||| ||| |||||||||||| ||||| |||||||||||||
seq2  AACTATGCC-AGA-CTC-AAGAATGTTGGC-ACATC-TCAGTGTGTTTGC  90

seq1  CCGCTTCCTTCAAAACCAAACAAATTATTTTAAACAAGATCACTTTCCTT  150
      |||||  |||| |||||||||||||   ||||||| |||||||||| |||
seq2  CCGCT--CTTC-AAACCAAACAAAT--ATTTAAAC-AGATCACTTT-CTT  133

seq1  TTTGGACTTGTTGACAGTGGTTAGTATTTAATGAAGTACGCTGAAATAAA  200
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAC-TGTTGACAGTGGTTAGTATTTAATGAAGTACGCTGAAATAAA  182

seq1  TACTACAAAGGATATAGAAACAGGATATTGATCAAAGACTTCTAAACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACAAAGGATATAGAAACAGGATATTGATCAAAGACTTCTAAACCAC  232

seq1  CATGTTTGGCCCATCCATTTATTAGTAAGCCAGACTAGTTCCATGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGGCCCATCCATTTATTAGTAAGCCAGACTAGTTCCATGGAAAG  282

seq1  ATAATTTTAAAGTACTTTTTGTGGAACATATGATTTATAACAGTACTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTAAAGTACTTTTTGTGGAACATATGATTTATAACAGTACTAAC  332

seq1  TTATGAACATCCTTAATAGGATGTTAACATCGTCATATTACAAAGTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAACATCCTTAATAGGATGTTAACATCGTCATATTACAAAGTCATT  382

seq1  TTGATCTTTTTAAGTACCTTGAACCAATTATCACTCCATTGTTAAACCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTTTTTAAGTACCTTGAACCAATTATCACTCCATTGTTAAACCAG  432

seq1  GTTCATTACCAATTTTTTTTTAACTCCTGGGCTTCCCCGTGTACCCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTACCAATTTTTTTTTAACTCCTGGGCTTCCCCGTGTACCCATCT  482

seq1  CTACCCCCTGAATATGCAAATGAAAACTTGTGGGGAATGGTGGCTGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCCTGAATATGCAAATGAAAACTTGTGGGGAATGGTGGCTGCACT  532

seq1  TGGTGCTCTTTCTCTTCTGCCTGGAGTAATAATGGTAGAAAGGTTTACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTCTTTCTCTTCTGCCTGGAGTAATAATGGTAGAAAGGTTTACAT  582

seq1  TTACAAATGTATTCCTTCCCAGCAGCAAGCTTGCTCTCCCTGTTGCTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATGTATTCCTTCCCAGCAGCAAGCTTGCTCTCCCTGTTGCTATT  632

seq1  GCAAAGAATAAAGAGAGCCGAGACTAAACCACGAATGTAAGACAACCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAATAAAGAGAGCCGAGACTAAACCACGAATGTAAGACAACCCAG  682

seq1  AAGGTTATTAGGACCCTCCATCAGCATGAATATTATGCATATTTTATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTATTAGGACCCTCCATCAGCATGAATATTATGCATATTTTATTCC  732

seq1  TGTCTGCAGAACTGTGAGACAGAAAGGGTGAGAAACACATGTAGGCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCAGAACTGTGAGACAGAAAGGGTGAGAAACACATGTAGGCAGAG  782

seq1  CAGTTTACCTAGAGATGCATTTTGGAAAACATAAATCTTATCTTTTTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTACCTAGAGATGCATTTTGGAAAACATAAATCTTATCTTTTTATA  832

seq1  GTAGTTATCAGAGACCACAAAGATCTCTTAATAGAAATTTCTCTATAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTATCAGAGACCACAAAGATCTCTTAATAGAAATTTCTCTATAAGA  882

seq1  AATAGGATTCTAAATCAGGTATATAAACTGTAATCCCAGCTCCTAGGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGATTCTAAATCAGGTATATAAACTGTAATCCCAGCTCCTAGGAGA  932

seq1  CTGAGGCAGAAGTATGGTTATAAATCTGAAGCCAGCCTGAGCTACAGTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCAGAAGTATGGTTATAAATCTGAAGCCAGCCTGAGCTACAGTGT  982

seq1  GAGATTCTGTCCCAAGAACACAACCCAACCAAAGCCAACAAAAAGGACAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTGTCCCAAGAACACAACCCAACCAAAGCCAACAAAAAGGACAC  1032

seq1  TGCATTCCCCACTGACATGTAAGACACAAGAATTTTATGTCTTTGAATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCCCCACTGACATGTAAGACACAAGAATTTTATGTCTTTGAATTC  1082