BAC Information

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BAC

Clone NameB6Ng01-044M04
Chromosome2 (Build37)
Map Location 118,466,764 - 118,600,948
singlet/doubletdoublet
Overlap geneBub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik
Upstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461
Downstream geneDisp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044M04.bB6Ng01-044M04.g
ACCDH870424DH870425
length1,0991,020
definitionDH870424|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M04, 5' end.DH870425|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,599,841 - 118,600,948)(118,466,764 - 118,467,792)
sequence
gaattcacatcacggggacgatacccactgaggacataaccgctccttct
gcagaagccatctgtgtggtactgggtgtcccaaaaggtgggctttggtg
ggagttctagctcttttatgtcttttgagaggaggcaacagcatgggcgc
caagagccccagacctaacagcgctctcatggcctcgtctcacaatgcct
aacttccccagggcttcataggtactgtggggaaagggacctgcctgttg
ttctcctggggttgaagagctattgagatgaaggatgtatagacttattt
cttaaatataaagtgttctttgggatacaaaggtttgtttgcttttgaaa
ctgcacgcaggtacctacacacacacacacacacacacacacacacacac
acacatgcaagcacacttggcagtcaacagatagggctgattgattgcct
ctgccctaccctctctcttttctcttctcttccttcttctacctcctagc
cacccagtcatgctgcttacctggatgcatctttacagggcaagagcagg
aagtgacacacggagcacctgtggttaacagataaagttttatttgcaat
gattttacccccaatctaatctctttcctttctagggctgttcatacata
gttccttcaaaagaagaaaggggtgcctgccaagtttcctggtcatgata
ctccccctccagggtaggtctctgaataaacacctggtattgaggggtca
taggggggcttggatccttcggtgtgtgcagagcagggaggggcagaaca
gatgggtgggcatggacttctagggaggacgaggaccttcaggactttgt
tcttgaaggacaaatgaatggatggccttattgggccctcactgctcatt
attgtctcctctcataaagactggaagagggtgagggtttaagtctgagt
caacttatcatccactggcagctgtcatcacgtgagctattgaggctaga
agcctcgtcttttgggctggcatgccaggcacattgacaaccccagaact
gacaccccataacacagtacactgaagacctaaaggatcagaccctctg
gaattctaatttttacatgcccaatcttgatagaaatgatttttttttaa
attttcttaggctaaaagacagtgaattgtggaataaattctttgtgcgg
attctgaatgccagtgacaagtccacagtgtctgttctgggggagctggc
agcagaaatgggtggggcttttgatgccacattccatagccacctgaaca
gagccctgtggaagctggggaagacaatcagcccggaagctttgctcact
cagcaagacaagcagccaggcggctcccagagccctgcctaagccatggg
tatggtgaagaactggtctggggctgctgtgatttgtttagagcacactt
agacacatcagcagtccttcactaggggtcactctcagtagcacagcttt
cagccaggtggctgtgccctggcagcctcatctggtttattcaaaaggtt
tctgtgcagacagctgctttttagccctctggcttctgccttctctcttt
tgtaattttataacatgtactctcctttcactgtgtattttataataaaa
tagtttttgttacatttctgttgctggcaattcatctacacttgcaaact
aaggtgataaatggcttcattttggagaggacttactctacggtggtaga
aacttatgtatcccagacttagagcagctgcctttgggttataagaaggc
agctggccggccatttcttccgtctctctctgtccttctagagggtgtcc
agaaagaagcaggtaaaatgacacacacacacacacacacacacacacca
gctttccttaagttcaaaggtaccggcctttggggacagagtactcagca
acctgtcatgcagacacagggctgctgaggggacagagaccattttcctt
aggtgtcagaaagcaggtcagaacagaaaggactgaagtggggactaata
tggaaaacagtagtctgatggaacactgtgcactcaaagggcgcactgct
ggtgtgtggggggcttgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_118599841_118600948
seq2: B6Ng01-044M04.b_42_1140 (reverse)

seq1  CAGAGGGTCCTGATACCTTTA-GTCTTCAAGTGTACTGTGTTATGGGGTT  49
      |||||||| ||||| |||||| |||||| ||||||||||||||||||| |
seq2  CAGAGGGT-CTGAT-CCTTTAGGTCTTC-AGTGTACTGTGTTATGGGG-T  46

seq1  GTCAGTTCTGGGGTTGTCAATTGTGCCTGGCATGCCAGGCCCAAAAAGAC  99
      |||||||||||||||||||| |||||||||||||||||  || |||||||
seq2  GTCAGTTCTGGGGTTGTCAA-TGTGCCTGGCATGCCAG--CCCAAAAGAC  93

seq1  GAGGC-TCTAGCCTCAATAGCTCCACGTGATGACAGCTTGCCAGTGGATG  148
      ||||| |||||||||||||||| |||||||||||||| ||||||||||||
seq2  GAGGCTTCTAGCCTCAATAGCT-CACGTGATGACAGC-TGCCAGTGGATG  141

seq1  ATAAGTTGACTCAGACCTTAAACCCCTCACCCTCTTCCAGTCTTTATGAG  198
      ||||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  ATAAGTTGACTCAGA-CTTAAA-CCCTCACCCTCTTCCAGTCTTTATGAG  189

seq1  AGGAGACAATAATGAGCAGTGAGGGCCCAATAAGGCCATCCATTCATTTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACAATAATGAGCAGTGAGGGCCCAATAAGGCCATCCATTCATTTG  239

seq1  TCCTTCAAGAACAAAGTCCTGAAGGTCCTCGTCCTCCCTAGAAGTCCATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAAGAACAAAGTCCTGAAGGTCCTCGTCCTCCCTAGAAGTCCATG  289

seq1  CCCACCCATCTGTTCTGCCCCTCCCTGCTCTGCACACACCGAAGGATCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCATCTGTTCTGCCCCTCCCTGCTCTGCACACACCGAAGGATCCA  339

seq1  AGCCCCCCTATGACCCCTCAATACCAGGTGTTTATTCAGAGACCTACCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCCTATGACCCCTCAATACCAGGTGTTTATTCAGAGACCTACCCT  389

seq1  GGAGGGGGAGTATCATGACCAGGAAACTTGGCAGGCACCCCTTTCTTCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGAGTATCATGACCAGGAAACTTGGCAGGCACCCCTTTCTTCTT  439

seq1  TTGAAGGAACTATGTATGAACAGCCCTAGAAAGGAAAGAGATTAGATTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGAACTATGTATGAACAGCCCTAGAAAGGAAAGAGATTAGATTGG  489

seq1  GGGTAAAATCATTGCAAATAAAACTTTATCTGTTAACCACAGGTGCTCCG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAATCATTGCAAATAAAACTTTATCTGTTAACCACAGGTGCTCCG  539

seq1  TGTGTCACTTCCTGCTCTTGCCCTGTAAAGATGCATCCAGGTAAGCAGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCACTTCCTGCTCTTGCCCTGTAAAGATGCATCCAGGTAAGCAGCA  589

seq1  TGACTGGGTGGCTAGGAGGTAGAAGAAGGAAGAGAAGAGAAAAGAGAGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGGTGGCTAGGAGGTAGAAGAAGGAAGAGAAGAGAAAAGAGAGAG  639

seq1  GGTAGGGCAGAGGCAATCAATCAGCCCTATCTGTTGACTGCCAAGTGTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGCAGAGGCAATCAATCAGCCCTATCTGTTGACTGCCAAGTGTGC  689

seq1  TTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTAC  739

seq1  CTGCGTGCAGTTTCAAAAGCAAACAAACCTTTGTATCCCAAAGAACACTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTGCAGTTTCAAAAGCAAACAAACCTTTGTATCCCAAAGAACACTT  789

seq1  TATATTTAAGAAATAAGTCTATACATCCTTCATCTCAATAGCTCTTCAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTAAGAAATAAGTCTATACATCCTTCATCTCAATAGCTCTTCAAC  839

seq1  CCCAGGAGAACAACAGGCAGGTCCCTTTCCCCACAGTACCTATGAAGCCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGAACAACAGGCAGGTCCCTTTCCCCACAGTACCTATGAAGCCC  889

seq1  TGGGGAAGTTAGGCATTGTGAGACGAGGCCATGAGAGCGCTGTTAGGTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGTTAGGCATTGTGAGACGAGGCCATGAGAGCGCTGTTAGGTCT  939

seq1  GGGGCTCTTGGCGCCCATGCTGTTGCCTCCTCTCAAAAGACATAAAAGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCTTGGCGCCCATGCTGTTGCCTCCTCTCAAAAGACATAAAAGAG  989

seq1  CTAGAACTCCCACCAAAGCCCACCTTTTGGGACACCCAGTACCACACAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTCCCACCAAAGCCCACCTTTTGGGACACCCAGTACCACACAGA  1039

seq1  TGGCTTCTGCAGAAGGAGCGGTTATGTCCTCAGTGGGTATCGTCCCCGTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTGCAGAAGGAGCGGTTATGTCCTCAGTGGGTATCGTCCCCGTG  1089

seq1  ATGTGAATTC  1108
      ||||||||||
seq2  ATGTGAATTC  1099

seq1: chr2_118466764_118467792
seq2: B6Ng01-044M04.g_66_1085

seq1  GAATTCTAATTTTCACATGCCCAATCTTGATAGAAATGATTTTTTTTTAA  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTTTTACATGCCCAATCTTGATAGAAATGATTTTTTTTTAA  50

seq1  ATTTTCTTAGGCTAAAAGACAGTGAATTGTGGAATAAATTCTTTGTGCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTAGGCTAAAAGACAGTGAATTGTGGAATAAATTCTTTGTGCGG  100

seq1  ATTCTGAATGCCAGTGACAAGTCCACAGTGTCTGTTCTGGGGGAGCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAATGCCAGTGACAAGTCCACAGTGTCTGTTCTGGGGGAGCTGGC  150

seq1  AGCAGAAATGGGTGGGGCTTTTGATGCCACATTCCATAGCCACCTGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAATGGGTGGGGCTTTTGATGCCACATTCCATAGCCACCTGAACA  200

seq1  GAGCCCTGTGGAAGCTGGGGAAGACAATCAGCCCGGAAGCTTTGCTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTGTGGAAGCTGGGGAAGACAATCAGCCCGGAAGCTTTGCTCACT  250

seq1  CAGCAAGACAAGCAGCCAGGCGGCTCCCAGAGCCCTGCCTAAGCCATGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGACAAGCAGCCAGGCGGCTCCCAGAGCCCTGCCTAAGCCATGGG  300

seq1  TATGGTGAAGAACTGGTCTGGGGCTGCTGTGATTTGTTTAGAGCACACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGAAGAACTGGTCTGGGGCTGCTGTGATTTGTTTAGAGCACACTT  350

seq1  AGACACATCAGCAGTCCTTCACTAGGGGTCACTCTCAGTAGCACAGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATCAGCAGTCCTTCACTAGGGGTCACTCTCAGTAGCACAGCTTT  400

seq1  CAGCCAGGTGGCTGTGCCCTGGCAGCCTCATCTGGTTTATTCAAAAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGTGGCTGTGCCCTGGCAGCCTCATCTGGTTTATTCAAAAGGTT  450

seq1  TCTGTGCAGACAGCTGCTTTTTAGCCCTCTGGCTTCTGCCTTCTCTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCAGACAGCTGCTTTTTAGCCCTCTGGCTTCTGCCTTCTCTCTTT  500

seq1  TGTAATTTTATAACATGTACTCTCCTTTCACTGTGTATTTTATAATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTTATAACATGTACTCTCCTTTCACTGTGTATTTTATAATAAAA  550

seq1  TAGTTTTTGTTACATTTCTGTTGCTGGCAATTCATCTACACTTGCAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTGTTACATTTCTGTTGCTGGCAATTCATCTACACTTGCAAACT  600

seq1  AAGGTGATAAATGGCTTCATTTTGGAGAGGACTTACTCTACGGTGGTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGATAAATGGCTTCATTTTGGAGAGGACTTACTCTACGGTGGTAGA  650

seq1  AACTTATGTATCCCAGACTTAGAGCAGCTGCCTTTGGGTTATAAGAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATGTATCCCAGACTTAGAGCAGCTGCCTTTGGGTTATAAGAAGGC  700

seq1  AGCTGGCCGGCCATTTCTTCCGTCTCTCTCTGTCCTTCTAGAGGGTGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCCGGCCATTTCTTCCGTCTCTCTCTGTCCTTCTAGAGGGTGTCC  750

seq1  AGAAAGAAGCAGGTAAAATGACACACACACACACACACACACACACACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAGCAGGTAAAATGACACACACACACACACACACACACACACCA  800

seq1  GCTTTCCTTAAGTTCAAAGGTACCGGCCTTTGGGGACAGAGTACTCAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCTTAAGTTCAAAGGTACCGGCCTTTGGGGACAGAGTACTCAGCA  850

seq1  ACCTGTCATGCAGGACACAGGGCTGCTGAGGGGACAGAGACCATTTTCCT  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCATGCA-GACACAGGGCTGCTGAGGGGACAGAGACCATTTTCCT  899

seq1  TAGGTGTCAGGAAAGCAGGGGTCAGAACAGAAAGGACTGAAGTGGGGACT  950
      ||||||||| |||||||  |||||||||||||||||||||||||||||||
seq2  TAGGTGTCA-GAAAGCA--GGTCAGAACAGAAAGGACTGAAGTGGGGACT  946

seq1  AATATGGAAAACAGTAAGTCTGATGGAACACTGTGCACCCAAAGGGGCGC  1000
      ||||||||||||||| |||||||||||||||||||||| |||| ||||||
seq2  AATATGGAAAACAGT-AGTCTGATGGAACACTGTGCACTCAAA-GGGCGC  994

seq1  ACTGGCTGGGTGTGTGGGGGGCTGTGGGG  1029
      ||| ||| ||||||||||||||| |||||
seq2  ACT-GCT-GGTGTGTGGGGGGCT-TGGGG  1020