BAC Information

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BAC

Clone NameB6Ng01-044P17
Chromosome2 (Build37)
Map Location 84,450,555 - 84,451,452
singlet/doubletsinglet
Overlap geneCtnnd1
Upstream geneZc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763
Downstream gene2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044P17.bB6Ng01-044P17.g
ACCDH870577DH870578
length8471,231
definitionDH870577|Mus musculus domesticus DNA, BAC clone: B6Ng01-044P17, 5' end.DH870578|Mus musculus domesticus DNA, BAC clone: B6Ng01-044P17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtctgtagaccaggctggcttcaaactcacagagccgcctgcc
tctgcctcaaaagtactgggattgaaagtgtatgacactgctttgggcta
gagtagttattcttaaagcatgggatcagctgggtatggtggtacaggct
tgtagtccttactcagagattaagacaggaggattgatgtgaatttgaag
ccagtctgcttgacattgcaagaccgtgtcttaaaagacaaaacaaaaac
ctaagaaaaaagagacatgaaatcaaggctctgaatgtgcttatgattta
ataggggaattgaggtgcctagtgatgcaggagcagcagtgcaggcagcc
gagcttggtttgtaggcattgattagtgctttctgtcttgccctttcttg
tgcaggctatgaactcttatttcagccagaagtggtgcgaatatacattt
cactccttaaggagagcaagacgcctgccatcttagaagcctcggccgga
gctatccagaacttgtgtgctgggcgttggacagtgagtacctctaagaa
aatggatttggggataggggtgtagataagtagtttgctaccatcggtaa
ctttttcaccgcttgcaatgtgcttcctatctcctagtatggcagataca
tccgctctgctcttcgtcaggagaaggctctctctgccatagcttgagct
cctttacgagtgagcatgagcgagtagtaaaagctgcttctggtggcact
tgagaaatctgggctgtggatgctcggaacaaagagttaattggaaagga
tctgaacccagtgcctagcacattgtctggattccactaatatgttt
gaattcagaactcatcagctggggaacgacggtgataaaggttcccgtaa
agcagactgttaagaaggattcaactgtatgaattcagaacttttcagct
ggggaacgaggtaagtctgatcttgaactttctaaggaaattcaagacag
tctatcagaagtaaagtggaaaatggctttacaagttatgtttggcctta
aattttttctagtgttagaagcccttttgttccttttcacatgttatata
gtgcttaagatagggctgaaaattctagaggaaattcaggacagtctatc
agaagtaaagcggggagagagagtaggagcaaggagaaacggtaagtata
caggcctttccaagggtcttgaacccgaggaaaagttaaggtcaggtagg
aatacctggggagagattagaaggaagaaaaagaaaaaagaaaagaaaaa
agatcgattagcggaggtctctaggagaaggagcctgtgctctgaagaaa
cagactgggagaaaaaagcggctcattatgaaagaaaaggataccagccg
ccaagtaaagtgctaactagtcattcaagaaaaaagccaaaagcggctgg
cgaaggccagtttgctaattggcctcagggcaatcggctaccaggtgcac
tcccgccctatgcggagtccccgccctgcgtagtgcgtcagcccgtagtg
cgtcagcaatgcgcagaggggcagtgcgcagagaggcagtgcgcagactc
attcattccccgagaggaacaaaggaaaatagaacaggcatttccagtct
ttaaaggagccgagggtgggcgtgtccacgctccggtagaatacgtacag
attaaggaaattgccgagtcgggtcgtaaatacggaaccaatgctaattt
taccttggcgcagttagacaggctcgctggcgtggcactgactcctgccg
actggcaaatgattgcaaaagtcgctctccctagtatggccaaatatgtg
gaatggcgagctctgtggcaaggaggcggcacaggcgcaggcccgagcaa
ccgctgctgcttactcagagcagagagattggacttttgacttgtaccgg
tctagagagcttatcttgctgacctgattagaggattcaatggaagaatc
ttaccacggtatggtccattgtcctattggtcgctttatggtgcaaagcc
tttgccagtgagaggtaccacatactcccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_84450555_84451452
seq2: B6Ng01-044P17.b_44_890 (reverse)

seq1  AAACATAAACTATGGAAGACTATAGTATCCTTCTCTTCAGTGATGTCAAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAATGAGTAAACAT-TTAGTGGAATCCAGACACTGTGCTAGGCACT-GGT  98
              |||||| ||||||||||||||||| ||||||||||||| |||
seq2  --------AAACATATTAGTGGAATCCAGACAATGTGCTAGGCACTGGGT  42

seq1  TCAGATCCTTACCAATTAACTCTTTGTTCCGAGCATCCACAG-CCAGATT  147
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  TCAGATCCTTTCCAATTAACTCTTTGTTCCGAGCATCCACAGCCCAGATT  92

seq1  TCTC-AGTGCC-CCAGAAGCAGCTTTTACTACTCGCTCATGCTCACTCGT  195
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGTGCCACCAGAAGCAGCTTTTACTACTCGCTCATGCTCACTCGT  142

seq1  -AAGGAGCTC-AGCTATGGCAGAGAGAGCCTTCTCCTGACGAAGAGCAGA  243
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGCTCAAGCTATGGCAGAGAGAGCCTTCTCCTGACGAAGAGCAGA  192

seq1  GCGGATGTATCTGCCATACTAGGAGATAGGAAGCACATTGCAAGCGGTGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGATGTATCTGCCATACTAGGAGATAGGAAGCACATTGCAAGCGGTGA  242

seq1  AAAAGTTACCGATGGTAGCAAACTACTTATCTACACCCCTATCCCCAAAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTACCGATGGTAGCAAACTACTTATCTACACCCCTATCCCCAAAT  292

seq1  CCATTTTCTTAGAGGTACTCACTGTCCAACGCCCAGCACACAAGTTCTGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCTTAGAGGTACTCACTGTCCAACGCCCAGCACACAAGTTCTGG  342

seq1  ATAGCTCCGGCCGAGGCTTCTAAGATGGCAGGCGTCTTGCTCTCCTTAAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCCGGCCGAGGCTTCTAAGATGGCAGGCGTCTTGCTCTCCTTAAG  392

seq1  GAGTGAAATGTATATTCGCACCACTTCTGGCTGAAATAAGAGTTCATAGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAATGTATATTCGCACCACTTCTGGCTGAAATAAGAGTTCATAGC  442

seq1  CTGCACAAGAAAGGGCAAGACAGAAAGCACTAATCAATGCCTACAAACCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAAGAAAGGGCAAGACAGAAAGCACTAATCAATGCCTACAAACCA  492

seq1  AGCTCGGCTGCCTGCACTGCTGCTCCTGCATCACTAGGCACCTCAATTCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGGCTGCCTGCACTGCTGCTCCTGCATCACTAGGCACCTCAATTCC  542

seq1  CCTATTAAATCATAAGCACATTCAGAGCCTTGATTTCATGTCTCTTTTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTAAATCATAAGCACATTCAGAGCCTTGATTTCATGTCTCTTTTTT  592

seq1  CTTAGGTTTTTGTTTTGTCTTTTAAGACACGGTCTTGCAATGTCAAGCAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTTTTTGTTTTGTCTTTTAAGACACGGTCTTGCAATGTCAAGCAG  642

seq1  ACTGGCTTCAAATTCACATCAATCCTCCTGTCTTAATCTCTGAGTAAGGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTTCAAATTCACATCAATCCTCCTGTCTTAATCTCTGAGTAAGGA  692

seq1  CTACAAGCCTGTACCACCATACCCAGCTGATCCCATGCTTTAAGAATAAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGCCTGTACCACCATACCCAGCTGATCCCATGCTTTAAGAATAAC  742

seq1  TACTCTAGCCCAAAGCAGTGTCATACACTTTCAATCCCAGTACTTTTGAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAGCCCAAAGCAGTGTCATACACTTTCAATCCCAGTACTTTTGAG  792

seq1  GCAGAGGCAGGCGGCTCTGTGAGTTTGAAGCCAGCCTGGTCTACAGACAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGCGGCTCTGTGAGTTTGAAGCCAGCCTGGTCTACAGACAG  842

seq1  AATTC  898
      |||||
seq2  AATTC  847