BAC Information

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BAC

Clone NameB6Ng01-045J09
Chromosome2 (Build37)
Map Location 64,922,033 - 65,074,979
singlet/doubletdoublet
Overlap geneCobll1
Upstream geneFign, LOC620544, LOC667291, Grb14
Downstream geneLOC383705, 9330158F14Rik, Scn3a, Scn2a1, A330102K23Rik, Galnt3, LOC620893, Ttc21b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045J09.bB6Ng01-045J09.g
ACCDH870999DH871000
length1,008899
definitionDH870999|Mus musculus domesticus DNA, BAC clone: B6Ng01-045J09, 5' end.DH871000|Mus musculus domesticus DNA, BAC clone: B6Ng01-045J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,922,033 - 64,923,034)(65,074,083 - 65,074,979)
sequence
gaattcttctgatgaagatctatccagaagctcaaaggtctcttctgttc
tgtaatataagctcacggcttacctcagctggcccagacctagtgtctcc
tcttggttcttaactcctaacacgtcttgcttctcatgcttctcaagttt
tcaaaggaatcataatattaacagacttggatggtcagttaaaatggaat
ttcagataatatgtgtaaaatgtgtgtcctcaaaactgtgcagactactc
atgctgaagattatttatcagataagtaaatttacctaaacatcttgtat
ctcacctgtcaactaacaagactccaaaaagactggaggtgacacttggg
tcctcacacttctaagcctaaagacaagtaggacagaagtacagagaaag
gcaatgaagacggagtgatactagattaggttgacttctagctggctggg
atctagggtttggggtgtactcatgttggatctagtattcactaggggga
ctttggggaaaatgacatttgaatttgagctgaccgaacaaatctatgaa
tgtgcttaaagtcattcaatctcatgtttaaaatggtgtgtttcacctac
tacccagctcggtgcagtgttgggtgtgcagcctgggagcccactgctat
gggctgggctggctcaggccaggaggccagacttagcagtcacttacgct
ttcccttgcacttcatccttccctcaaggccactcagagctttctttttc
agagcagcacctgaaggatagtgccggcaacaaactatactaacctttga
cacatctcggaaccagcacaatgtcacctctgtcttttcaataggcacaa
aaccagatgcttctacagacaggaaaatgagtcccggcctctgtacagag
aatacctgccaagtcacagggcaactgtgtgcgtgaatggcaggaaatat
ctgagctatcactgatccatcacatgatgaaagaagaaagaagatgatga
agaaagaa
gaattcccgtgtgtgtctgtgtaatacacttacacaacacgcagtctcag
atgctcaggaatcggttcttctaaacaaaataggtgaggccggagagctc
ggtgatgaaatatagagctttctagtgacaagcctagaataccccgggtt
ttatgcttgagaacttgggggctaaacaaatgagttccttgaaagtatgc
atatatttaattgcttgatgactttatttatttatttatttatttggcag
cgactcctttaggctaggctggtctgcaactgcatttatagttgagggtt
acctcttgtttctgcctcccaaaattgaggttacaggaatacaccactgc
accctaaagaggaaaatattttaaagaacctttgtgcttacctttcaaac
ttcagggaagatatctgggaaaatgctcctgtaaataaactgccataata
cctaatagtattcttttaagaaaaaaaaaaagagcttctagtggcttgcc
ctctcccacttgtctattccaagtgcctgtcatgtctgatgagtattcag
gattagtgtttgctttttctaaaaaaaaaaaaaaaaaaaaaaaattgaga
cctttaaaaaagtttaaattgtgggaaaatgagagtatttaggaggtgca
gggtgcaatcctaatatgatataattgttggttttgaaggtaggttcctt
actatagaactaattatatcatgactcaatagcctaatagctggtgaggc
ctactttagttcttatccgtggattattgttgttcaaaagaagtcctctg
ttgtctgtaattttccaaggtttactctgttgtaacaggttatttgaagg
gcaaatacattgcagcttcatatttttacagggtgggggggggggtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_64922033_64923034
seq2: B6Ng01-045J09.b_45_1052

seq1  GAATTCTTCTGATGAAGATCTATCCAGAAGCTCAAAGGTCTCTTCTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGATGAAGATCTATCCAGAAGCTCAAAGGTCTCTTCTGTTC  50

seq1  TGTAATATAAGCTCACGGCTTACCTCAGCTGGCCCAGACCTAGTGTCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATAAGCTCACGGCTTACCTCAGCTGGCCCAGACCTAGTGTCTCC  100

seq1  TCTTGGTTCTTAACTCCTAACACGTCTTGCTTCTCATGCTTCTCAAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTCTTAACTCCTAACACGTCTTGCTTCTCATGCTTCTCAAGTTT  150

seq1  TCAAAGGAATCATAATATTAACAGACTTGGATGGTCAGTTAAAATGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGAATCATAATATTAACAGACTTGGATGGTCAGTTAAAATGGAAT  200

seq1  TTCAGATAATATGTGTAAAATGTGTGTCCTCAAAACTGTGCAGACTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATAATATGTGTAAAATGTGTGTCCTCAAAACTGTGCAGACTACTC  250

seq1  ATGCTGAAGATTATTTATCAGATAAGTAAATTTACCTAAACATCTTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAAGATTATTTATCAGATAAGTAAATTTACCTAAACATCTTGTAT  300

seq1  CTCACCTGTCAACTAACAAGACTCCAAAAAGACTGGAGGTGACACTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTGTCAACTAACAAGACTCCAAAAAGACTGGAGGTGACACTTGGG  350

seq1  TCCTCACACTTCTAAGCCTAAAGACAAGTAGGACAGAAGTACAGAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACACTTCTAAGCCTAAAGACAAGTAGGACAGAAGTACAGAGAAAG  400

seq1  GCAATGAAGACGGAGTGATACTAGATTAGGTTGACTTCTAGCTGGCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAAGACGGAGTGATACTAGATTAGGTTGACTTCTAGCTGGCTGGG  450

seq1  ATCTAGGGTTTGGGGTGTACTCATGTTGGATCTAGTATTCACTAGGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGGTTTGGGGTGTACTCATGTTGGATCTAGTATTCACTAGGGGGA  500

seq1  CTTTGGGGAAAATGACATTTGAATTTGAGCTGACCGAACAAATCTATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGGAAAATGACATTTGAATTTGAGCTGACCGAACAAATCTATGAA  550

seq1  TGTGCTTAAAGTCATTCAATCTCATGTTTAAAATGGTGTGTTTCACCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTAAAGTCATTCAATCTCATGTTTAAAATGGTGTGTTTCACCTAC  600

seq1  TACCCAGCTCGGTGCAGTGTTGGGTGTGCAGCCTGGGAGCCCACTGCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGCTCGGTGCAGTGTTGGGTGTGCAGCCTGGGAGCCCACTGCTAT  650

seq1  GGGCTGGGCTGGCTCAGGCCAGGAGGCCAGACTTAGCAGTCACTTACGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGCTGGCTCAGGCCAGGAGGCCAGACTTAGCAGTCACTTACGCT  700

seq1  TTCCCTTGCACTTCATCCTTCCCTCAAGGCCACTCAGAGCTTTCTTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTGCACTTCATCCTTCCCTCAAGGCCACTCAGAGCTTTCTTTTTC  750

seq1  AGAGCAGCACCTGAAGGATAGTGCCGGCAACAAACTATACTAACCTTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGCACCTGAAGGATAGTGCCGGCAACAAACTATACTAACCTTTGA  800

seq1  CACATCTCGGAACCAGCACAATGTCACCTCTGTCTTTTCAATAGGCACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCGGAACCAGCACAATGTCACCTCTGTCTTTTCAATAGGCACAA  850

seq1  AACCAGATGCTTCTACAGACAGGAAAATGAGT-CCGGCCTCTGTACAGAG  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AACCAGATGCTTCTACAGACAGGAAAATGAGTCCCGGCCTCTGTACAGAG  900

seq1  AATACCTGCCAAGTCACAGGGCAACTGTGTGCGTGAATGGCAGGGAAATA  949
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  AATACCTGCCAAGTCACAGGGCAACTGTGTGCGTGAATGGCA-GGAAAT-  948

seq1  ATCTGAGCTATCACTGATCCATCACCATGGATGAAA-AAGAAAGA-----  993
      |||||||||||||||||||||||| ||| ||||||| ||||||||     
seq2  ATCTGAGCTATCACTGATCCATCA-CAT-GATGAAAGAAGAAAGAAGATG  996

seq1  ---AAGAAAGAA  1002
         |||||||||
seq2  ATGAAGAAAGAA  1008

seq1: chr2_65074083_65074979
seq2: B6Ng01-045J09.g_70_968 (reverse)

seq1  CCCACCCCCACCCCCACCCTTGTAAAATATGAAGCTGCATTG-ATTTGCC  49
      | ||||||| ||||||||||   |||||||||||||||| || |||||||
seq2  CACACCCCCCCCCCCACCCTGTAAAAATATGAAGCTGCAATGTATTTGCC  50

seq1  CTTCAAATAACCTGTTACAACAGAGTAAACCTTGGAAAATTACAGACAAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATAACCTGTTACAACAGAGTAAACCTTGGAAAATTACAGACAAC  100

seq1  AGAGGACTTCTTTTGAACAACAAT-ATCCACGGATAAGAACTAAAGTAGG  148
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGAGGACTTCTTTTGAACAACAATAATCCACGGATAAGAACTAAAGTAGG  150

seq1  CCTCACCAGCTATTAGGCTATTGAGTCATGATATAATTAGTTCTATAGTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCAGCTATTAGGCTATTGAGTCATGATATAATTAGTTCTATAGTA  200

seq1  AGGAACCTACCTTCAAAACCAACAATTATATCATATTAGGATTGCACCCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCTACCTTCAAAACCAACAATTATATCATATTAGGATTGCACCCT  250

seq1  GCACCTCCTAAATACTCTCATTTTCCCACAATTTAAACTTTTTTAAAGGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCCTAAATACTCTCATTTTCCCACAATTTAAACTTTTTTAAAGGT  300

seq1  CTCAATTTTTTTTTTTTTTTTTTTTTTTTAGAAAAAGCAAACACTAATCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTTTTTTTTTTTTTTTTTTTTTTTAGAAAAAGCAAACACTAATCC  350

seq1  TGAATACTCATCAGACATGACAGGCACTTGGAATAGACAAGTGGGAGAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACTCATCAGACATGACAGGCACTTGGAATAGACAAGTGGGAGAGG  400

seq1  GCAAGCCACTAGAAGCTCTTTTTTTTTTTCTTAAAAGAATACTATTAGGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCACTAGAAGCTCTTTTTTTTTTTCTTAAAAGAATACTATTAGGT  450

seq1  ATTATGGCAGTTTATTTACAGGAGCATTTTCCCAGATATCTTCCCTGAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGCAGTTTATTTACAGGAGCATTTTCCCAGATATCTTCCCTGAAG  500

seq1  TTTGAAAGGTAAGCACAAAGGTTCTTTAAAATATTTTCCTCTTTAGGGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGGTAAGCACAAAGGTTCTTTAAAATATTTTCCTCTTTAGGGTG  550

seq1  CAGTGGTGTATTCCTGTAACCTCAATTTTGGGAGGCAGAAACAAGAGGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGTATTCCTGTAACCTCAATTTTGGGAGGCAGAAACAAGAGGTA  600

seq1  ACCCTCAACTATAAATGCAGTTGCAGACCAGCCTAGCCTAAAGGAGTCGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAACTATAAATGCAGTTGCAGACCAGCCTAGCCTAAAGGAGTCGC  650

seq1  TGCCAAATAAATAAATAAATAAATAAAGTCATCAAGCAATTAAATATATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAATAAATAAATAAATAAATAAAGTCATCAAGCAATTAAATATATG  700

seq1  CATACTTTCAAGGAACTCATTTGTTTAGCCCCCAAGTTCTCAAGCATAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTTCAAGGAACTCATTTGTTTAGCCCCCAAGTTCTCAAGCATAAA  750

seq1  ACCCGGGGTATTCTAGGCTTGTCACTAGAAAGCTCTATATTTCATCACCG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGGGTATTCTAGGCTTGTCACTAGAAAGCTCTATATTTCATCACCG  800

seq1  AGCTCTCCGGCCTCACCTATTTTGTTTAGAAGAACCGATTCCTGAGCATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCCGGCCTCACCTATTTTGTTTAGAAGAACCGATTCCTGAGCATC  850

seq1  TGAGACTGCGTGTTGTGTAAGTGTATTACACAGACACACACGGGAATTC  897
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTGCGTGTTGTGTAAGTGTATTACACAGACACACACGGGAATTC  899