BAC Information

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BAC

Clone NameB6Ng01-045K08
Chromosome2 (Build37)
Map Location 178,755,508 - 178,956,504
singlet/doubletdoublet
Overlap geneLOC665264, LOC100043168
Upstream geneLOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26, LOC100039368
Downstream geneLOC100039413, Cdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045K08.bB6Ng01-045K08.g
ACCDH871043DH871044
length485980
definitionDH871043|Mus musculus domesticus DNA, BAC clone: B6Ng01-045K08, 5' end.DH871044|Mus musculus domesticus DNA, BAC clone: B6Ng01-045K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,956,014 - 178,956,504)(178,755,508 - 178,756,488)
sequence
cagtcctctatgagaacatcatacactctcaattactgcatcttctctag
agacacatcctgttttgactgacacaatctttcactgatccaggaacctt
ctaactaggctgaactagctgggcagcaagccctaggaatcctccatctc
tgcctccaagtgatgggattgcaggcttcagcacacctggcagtttacat
ggaccctgaggcttacctagcaatctctttactgactgacctaattctcc
agtgcctatgtgtgtatgtatatgtatatgtatgtttatcaatattatgt
atatatacgtttatgttatatatgtttatacgcatgtagttatgagttgt
aacatgtatgtttatgtattagtgcacaattcatcctgttgattgtgtgt
ttacatgtatcctctctctgtctctctctctctgtctctctctctgtctc
tcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttat
gaattcatgttcttggatcttgggctgaaagtttgtggatttgggtcatc
ctgaggcaggctctgacccatgtcctgtcttccctgccagttttgggctt
cccgtatctggggggagtcaagctcactgtctcaacccaacttgagtata
tgcagccgcatgtttgcacaagacagcagagtctcaagctctacctgcag
ggtgtccaggtcctcaataccagcgccaccctccttggagcaggccagcc
ctgccatgtgcttgggtcagaccttcaggtggtctacagacttgaagtca
tgaaagcgcaatgagcagtccttgagctcatgtatggcccaggagatggg
actctccctggaatgttctgaaggttaagaagtgatgcttggcacagagt
gggcagatagtgtgttttattactaaaaacaacacagaattccagactgg
tgcattttccctcaaattaaaatttttctaatgagtagttctttgttttt
cccctcgcttcatatcagtttttctcctttgaattctttcaaggttttct
attttgctttaatttttttcataatttgtatttatgtgtattgtagtgtt
gatcatggctgagggtctctgggttttcctgggtatgtggatttgtacct
ttaactattttctaaggagttacacgggtcctaacccctttcagggattt
cttgtgccattttctccattcttgcttctagctttcatttatttctgttt
gaaacctggcctttccgcacttctctgtagtttgctgggttcagagttaa
aattttgagttaaatttataatgatgattccttttgaccagtttcacgtt
tccactcatactcggcgtatctaagtcctccaggaaagtccagttgagga
gtctttgctctgctattcaacgtgcaacatctcactgaattccctacgtg
ttcctgcacattccgtcttccccaacaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_178956014_178956504
seq2: B6Ng01-045K08.b_46_536 (reverse)

seq1  ATAACACACACACACACACACACACACACACACGAGAGACAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACACACACACACACACACACACACACACGAGAGACAGAGAGAGAG  50

seq1  ACAGAGAGAGAGAGACAGAGAGAGGATACATGTAAACACACAATCAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAGAGAGACAGAGAGAGGATACATGTAAACACACAATCAACAG  100

seq1  GATGAATTGTGCACTAATACATAAACATACATGTTACAACTCATAACTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATTGTGCACTAATACATAAACATACATGTTACAACTCATAACTAC  150

seq1  ATGCGTATAAACATATATAACATAAACGTATATATACATAATATTGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTATAAACATATATAACATAAACGTATATATACATAATATTGATAA  200

seq1  ACATACATATACATATACATACACACATAGGCACTGGAGAATTAGGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATATACATATACATACACACATAGGCACTGGAGAATTAGGTCAG  250

seq1  TCAGTAAAGAGATTGCTAGGTAAGCCTCAGGGTCCATGTAAACTGCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAAGAGATTGCTAGGTAAGCCTCAGGGTCCATGTAAACTGCCAGG  300

seq1  TGTGCTGAAGCCTGCAATCCCATCACTTGGAGGCAGAGATGGAGGATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGAAGCCTGCAATCCCATCACTTGGAGGCAGAGATGGAGGATTCC  350

seq1  TAGGGCTTGCTGCCCAGCTAGTTCAGCCTAGTTAGAAGGTTCCTGGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTTGCTGCCCAGCTAGTTCAGCCTAGTTAGAAGGTTCCTGGATCA  400

seq1  GTGAAAGATTGTGTCAGTCAAAACAGGATGTGTCTCTAGAGAAGATGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGATTGTGTCAGTCAAAACAGGATGTGTCTCTAGAGAAGATGCAG  450

seq1  TAATTGAGAGTGTATGATGTTCTCATAGAGGACTGGAATTC  491
      |||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAGAGTGTATGATGTTCTCATAGAGGACTGGAATTC  491

seq1: chr2_178755508_178756488
seq2: B6Ng01-045K08.g_69_1048

seq1  GAATTCATGTTCTTGGATCTTGGGCTGAAAGTTTGTGGATTTGGGTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTCTTGGATCTTGGGCTGAAAGTTTGTGGATTTGGGTCATC  50

seq1  CTGAGGCAGGCTCTGACCCATGTCCTGTCTTCCCTGCCAGTTTTGGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCAGGCTCTGACCCATGTCCTGTCTTCCCTGCCAGTTTTGGGCTT  100

seq1  CCCGTATCTGGGGGGAGTCAAGCTCACTGTCTCAACCCAACTTGAGTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTATCTGGGGGGAGTCAAGCTCACTGTCTCAACCCAACTTGAGTATA  150

seq1  TGCAGCCGCATGTTTGCACAAGACAGCAGAGTCTCAAGCTCTACCTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCGCATGTTTGCACAAGACAGCAGAGTCTCAAGCTCTACCTGCAG  200

seq1  GGTGTCCAGGTCCTCAATACCAGCGCCACCCTCCTTGGAGCAGGCCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCAGGTCCTCAATACCAGCGCCACCCTCCTTGGAGCAGGCCAGCC  250

seq1  CTGCCATGTGCTTGGGTCAGACCTTCAGGTGGTCTACAGACTTGAAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATGTGCTTGGGTCAGACCTTCAGGTGGTCTACAGACTTGAAGTCA  300

seq1  TGAAAGCGCAATGAGCAGTCCTTGAGCTCATGTATGGCCCAGGAGATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCGCAATGAGCAGTCCTTGAGCTCATGTATGGCCCAGGAGATGGG  350

seq1  ACTCTCCCTGGAATGTTCTGAAGGTTAAGAAGTGATGCTTGGCACAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCCTGGAATGTTCTGAAGGTTAAGAAGTGATGCTTGGCACAGAGT  400

seq1  GGGCAGATAGTGTGTTTTATTACTAAAAACAACACAGAATTCCAGACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGATAGTGTGTTTTATTACTAAAAACAACACAGAATTCCAGACTGG  450

seq1  TGCATTTTCCCTCAAATTAAAATTTTTCTAATGAGTAGTTCTTTGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTCCCTCAAATTAAAATTTTTCTAATGAGTAGTTCTTTGTTTTT  500

seq1  CCCCTCGCTTCATATCAGTTTTTCTCCTTTGAATTCTTTCAAGGTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCGCTTCATATCAGTTTTTCTCCTTTGAATTCTTTCAAGGTTTTCT  550

seq1  ATTTTGCTTTAATTTTTTTCATAATTTGTATTTATGTGTATTGTAGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTTTAATTTTTTTCATAATTTGTATTTATGTGTATTGTAGTGTT  600

seq1  GATCATGGCTGAGGGTCTCTGGG-TTTCCTGGGTATGTGGATTTGTACCT  649
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GATCATGGCTGAGGGTCTCTGGGTTTTCCTGGGTATGTGGATTTGTACCT  650

seq1  TTAACTA-TTTCTAAGGAGTTACACGGGTCCTAACCCC-TTCAGGGATTT  697
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  TTAACTATTTTCTAAGGAGTTACACGGGTCCTAACCCCTTTCAGGGATTT  700

seq1  CTTGTGCCATTTTCTCCATTCTTGCTTCTAGCTTTCCATTTATTTCTGTT  747
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTTGTGCCATTTTCTCCATTCTTGCTTCTAGCTTT-CATTTATTTCTGTT  749

seq1  TGAAACCTGGCCTTTCCGCACTTCTCTGTAGTTTGCTGTGTTCTGAGTTT  797
      |||||||||||||||||||||||||||||||||||||| |||| ||| ||
seq2  TGAAACCTGGCCTTTCCGCACTTCTCTGTAGTTTGCTGGGTTCAGAG-TT  798

seq1  ATATTTTTGAGTTTAAATTTAT-ATGATGATTCCTTTGACCCAGTTTCAC  846
      | | ||||||| |||||||||| ||||||||||||||   ||||||||||
seq2  AAAATTTTGAG-TTAAATTTATAATGATGATTCCTTTTGACCAGTTTCAC  847

seq1  GTTT-CACTCATACTCGGCGTACTCT-AGTCCTCCAGG-AAGTCCAGGTG  893
      |||| ||||||||||||||||| ||| ||||||||||| |||||||| ||
seq2  GTTTCCACTCATACTCGGCGTA-TCTAAGTCCTCCAGGAAAGTCCAGTTG  896

seq1  AGGAGTTCTTTGTCTCTGCTATTCCAACGTGCAACACCTCCACTGAAATT  943
      ||||| |||||| |||||||||| |||||||||||| || ||||| ||||
seq2  AGGAG-TCTTTG-CTCTGCTATT-CAACGTGCAACATCT-CACTG-AATT  941

seq1  CCCTACGTGTT-CTGCACATTCTGTCTTCCCCAACAAAG  981
      ||||||||||| |||||||||| ||||||||||||||||
seq2  CCCTACGTGTTCCTGCACATTCCGTCTTCCCCAACAAAG  980