BAC Information

Click to search

BAC

Clone NameB6Ng01-045L09
Chromosome2 (Build37)
Map Location 178,522,012 - 178,580,879
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26
Downstream geneLOC100039368, LOC665264, LOC100043168, LOC100039413, Cdh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045L09.bB6Ng01-045L09.g
ACCDH871087DH871088
length289936
definitionDH871087|Mus musculus domesticus DNA, BAC clone: B6Ng01-045L09, 5' end.DH871088|Mus musculus domesticus DNA, BAC clone: B6Ng01-045L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,522,012 - 178,522,300)(178,580,308 - 178,580,879)
sequence
caccgcacttaggtttggagcctgaaggaagagctgggaactagaacatg
ggagcaaggtgtcagctgagagaaaggatacaagggaagattcctgttat
gactgatgctgtttctctcaggtggaaggcacagcttaggttctatgaag
gcgaacctgggatgtctttaccacctgaccatgagtccctacctcaaatg
tttggacaggcttgactcatgcagcatcagcagtggaggtgaggggggac
agtgggggcagtgacagtaggagaggaggggcggggcgg
gaattctgtctcaatctctcttcacttgatttctttgagaccaggtctga
agttggctgacctaggctgaccagtcctgggaattttctgttctctactt
caccagagttgggaatacagttgcacactcacgcctggctttttgcatgg
gtcatggggatctgaacttgtactttcatgcctacacagcaagcatactt
ccaccactgtgggccagtgtacaagaggcttcgcatggagatctctggcc
cggcctggtgcgagagttccagcggagggaggcgagtacgggcaggctct
gctgctgcagttggctctacctctgtctctgccgtgccttccaggttatt
ctgcgcagccctgaactgagtcgggttgcgttgggcctacgagaggccga
ctagtcagtgaggagtgcagcagagcatcaagcgtgagcttcgggagagc
agacctcttcccaagtgttacagctcttaggacagaaggttctcacacac
ctctaatccttccagataggattctgatctacagttttggggtaggtaag
ggtctgacaacaggcacttctcattggcttggtctgggagctttagggga
accttatttgcatgtgggagggcttggtgcttctacaggacagatggtca
cacacctctctgtggggttgagggactgtgggaggctgtaactgtgacaa
gagccaggggtccaggaggcgtggccgaacaccttctgtcccatgcaggc
tgaaatcaccacccacagggtcactgggattctagacctttgtttgatca
gggaccaggctgtctgtgccacagcccactgccccacacactaccctcca
gacaccttccatagtctgaggagatgttcttaacacgttctccaggttgg
gatctgtttatttggttggtagttggttggttgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_178522012_178522300
seq2: B6Ng01-045L09.b_47_335

seq1  CACCGCACTTAGGTTTGGAGCCTGAAGGAAGAGCTGGGAACTAGAACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCACTTAGGTTTGGAGCCTGAAGGAAGAGCTGGGAACTAGAACATG  50

seq1  GGAGCAAGGTGTCAGCTGAGAGAAAGGATACAAGGGAAGATTCCTGTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAGGTGTCAGCTGAGAGAAAGGATACAAGGGAAGATTCCTGTTAT  100

seq1  GACTGATGCTGTTTCTCTCAGGTGGAAGGCACAGCTTAGGTTCTATGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATGCTGTTTCTCTCAGGTGGAAGGCACAGCTTAGGTTCTATGAAG  150

seq1  GCGAACCTGGGATGTCTTTACCACCTGACCATGAGTCCCTACCTCAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAACCTGGGATGTCTTTACCACCTGACCATGAGTCCCTACCTCAAATG  200

seq1  TTTGGACAGGCTTGACTCATGCAGCATCAGCAGTGGAGGTGAGGGGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACAGGCTTGACTCATGCAGCATCAGCAGTGGAGGTGAGGGGGGAC  250

seq1  AGTGGGGGCAGTGACAGTAGGAGAGGAGGGGCGGGGCGG  289
      |||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGGCAGTGACAGTAGGAGAGGAGGGGCGGGGCGG  289

seq1: chr2_178580308_178580879
seq2: B6Ng01-045L09.g_434_1005 (reverse)

seq1  AACCAACCAACCAACTAACCAACCAAATAAACAGATCCAAACCTGGAGAA  50
      | |||||||||||||| ||||||||||||||||||||| ||||||||| |
seq2  ACCCAACCAACCAACT-ACCAACCAAATAAACAGATCCCAACCTGGAG-A  48

seq1  ACGTGTTAAGAACATCTCCTCAGACTATGG-AGGTGTCTGGAGGGTAGTG  99
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACGTGTTAAGAACATCTCCTCAGACTATGGAAGGTGTCTGGAGGGTAGTG  98

seq1  TGTGGGGCAGTGGGCTGT-GCACAGACAGCCTGGTCCCTGATCAAACAAA  148
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGTGGGGCAGTGGGCTGTGGCACAGACAGCCTGGTCCCTGATCAAACAAA  148

seq1  GGTCTAGAATCCCAGTGACCCTGTGGGTGGTGATTTCAGCCTGCATGGGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAGAATCCCAGTGACCCTGTGGGTGGTGATTTCAGCCTGCATGGGA  198

seq1  CAGAAGGTGTTCGGCCACGCCTCCTGGACCCCTGGCTCTTGTCACAGTTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGTGTTCGGCCACGCCTCCTGGACCCCTGGCTCTTGTCACAGTTA  248

seq1  CAGCCTCCCACAGTCCCTCAACCCCACAGAGAGGTGTGTGACCATCTGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCCACAGTCCCTCAACCCCACAGAGAGGTGTGTGACCATCTGTC  298

seq1  CTGTAGAAGCACCAAGCCCTCCCACATGCAAATAAGGTTCCCCTAAAGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAAGCACCAAGCCCTCCCACATGCAAATAAGGTTCCCCTAAAGCT  348

seq1  CCCAGACCAAGCCAATGAGAAGTGCCTGTTGTCAGACCCTTACCTACCCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACCAAGCCAATGAGAAGTGCCTGTTGTCAGACCCTTACCTACCCC  398

seq1  AAAACTGTAGATCAGAATCCTATCTGGAAGGATTAGAGGTGTGTGAGAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTAGATCAGAATCCTATCTGGAAGGATTAGAGGTGTGTGAGAAC  448

seq1  CTTCTGTCCTAAGAGCTGTAACACTTGGGAAGAGGTCTGCTCTCCCGAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCCTAAGAGCTGTAACACTTGGGAAGAGGTCTGCTCTCCCGAAG  498

seq1  CTCACGCTTGATGCTCTGCTGCACTCCTCACTGACTAGTCGGCCTCTCGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGCTTGATGCTCTGCTGCACTCCTCACTGACTAGTCGGCCTCTCGT  548

seq1  AGGCCCAACGCAACCCGACTCAGT  572
      ||||||||||||||||||||||||
seq2  AGGCCCAACGCAACCCGACTCAGT  572