BAC Information

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BAC

Clone NameB6Ng01-045L14
Chromosome2 (Build37)
Map Location 78,432,001 - 78,567,817
singlet/doubletdoublet
Overlap geneLOC100040476
Upstream geneZfp533, BC003993, LOC667920, OTTMUSG00000016703, LOC383717
Downstream geneLOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045L14.bB6Ng01-045L14.g
ACCDH871097DH871098
length1,115952
definitionDH871097|Mus musculus domesticus DNA, BAC clone: B6Ng01-045L14, 5' end.DH871098|Mus musculus domesticus DNA, BAC clone: B6Ng01-045L14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,432,001 - 78,433,133)(78,566,859 - 78,567,817)
sequence
gaattcttgaccagtataggcaaagtccttggtctgatctccagcatact
ataaacccagctatggtgcttcatagctggaatctcaacactcaggaagt
cacagaatctgaagttcaaggtcatcattggctacatgacaaggtcaaag
ccagtctaggatacatgagaccccaccttaaaaaagagacagacttgcac
actaaagtatactataatgtattggtttgaaagaggtaatccttgcattt
acttccagatgcaataaaccgaactagagctgtgaatttgcccaagcata
gagagagaaagcagtccatgggaagcagagaagtgaaaaatctgagcacc
tttaaagcttgctagagacatggaaattctgagagtaaaaggaaatagaa
gccttccataagaatcccaagccctccagaacagcacttgtagagctttc
agagactaagatggaaccagggaggacaaggtgacagaaagggggccaag
agagtatgggatgggaggattacccttaaagattagagttatcagagtgt
tgatgtctcagtgacattaagttgttatattgttcaaacacaagaagtta
aaggtctaaagataaactaagtgttcaggaataaatacagaggcaagagg
tgttgcgaaggccaactgtactcattgtacagtcagatttggcagcatag
tctcaggtacaatgatctgcatccaaaccaatgaccatgatctctaggca
ggcaaatgtgtgctcctaggttacccaactcttgttaagaacaatgagga
gatagaaaatgtgaatcatagagatttcaagaacagtgctcatactgcct
ttacagtttgctttaatttggaaatatcttaggattttgcatgaacaaac
tctgcaaatatcaatattcctcttgcttctgttatacaaatgtttagaga
tgtgcagcttagagtgagccagaaagaacaggttttcattcctctctatc
tgtctgcttgtctattttttttcttttcagtcattttaatttccatttag
atcctaaatgtttctttttcatacatagctgatgcttgtttacttttttt
tttgtttaatttttt
gaattcagtgtttttcattgttccttctgtctttatgaacacttttttat
ttttcttgatttctatttcatccaataatgacaattttaccccttgtctc
tccctgtggtcatttacctgataactttacttcatttctctctttcaagt
atttttgtgctgtgttctttaagatatgacttttgctagtattttaattt
agacaagttatttcatttcattttcattcaatttgggaacactgacattt
gctgtctcacagatgtgtctggcttttcttgccatagttgaagaaatatt
tatatttagtaaccttttttcaagcttttttttaatatatatatacattt
cttggccttttggtttttcagtgttttcccagtgtgaatggttttgttgg
tattagttttgatcttggacattatcttcaagactttttcagagttcttc
catggacatcacatctatctttgctgaagagaacgaacatctcattcctt
tgtaactaaaaacttacagttttcccattgccctatttctctgcacattt
ctaggcatgcctgggaatttctcgtttgaacttagcttgtatgatgagtt
ttaaactgaaagcaagcagtagaaaagccttctctatcaccttcctttgc
ctctgactttcctcttatcaatcagttcagaaaccctaattagttgagga
agagtctctttcagatttcttttctgatgttcgtagtctgttttctccta
tgctatgtgcttacacattttatttccttaacattttaatattttcaatt
tacttttcaaatatagttgttctgctagcccatttgggtttttttgtttg
tttgggtagttgttttttttttttttttttgttgggttttgtattatgag
catatattttctttcaagattgagattcatcctgttgtcttcgcatgaga
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_78432001_78433133
seq2: B6Ng01-045L14.b_46_1160

seq1  GAATTCTTGACCAGTATAGGCAAAGTCCTTGGTCTGATCTCCAGCATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACCAGTATAGGCAAAGTCCTTGGTCTGATCTCCAGCATACT  50

seq1  ATAAACCCAGCTATGGTGCTTCATAGCTGGAATCTCAACACTCAGGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCCAGCTATGGTGCTTCATAGCTGGAATCTCAACACTCAGGAAGT  100

seq1  CACAGAATCTGAAGTTCAAGGTCATCATTGGCTACATGACAAGGTCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATCTGAAGTTCAAGGTCATCATTGGCTACATGACAAGGTCAAAG  150

seq1  CCAGTCTAGGATACATGAGACCCCACCTTAAAAAAGAGACAGACTTGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTAGGATACATGAGACCCCACCTTAAAAAAGAGACAGACTTGCAC  200

seq1  ACTAAAGTATACTATAATGTATTGGTTTGAAAGAGGTAATCCTTGCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGTATACTATAATGTATTGGTTTGAAAGAGGTAATCCTTGCATTT  250

seq1  ACTTCCAGATGCAATAAACCGAACTAGAGCTGTGAATTTGCCCAAGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAGATGCAATAAACCGAACTAGAGCTGTGAATTTGCCCAAGCATA  300

seq1  GAGAGAGAAAGCAGTCCATGGGAAGCAGAGAAGTGAAAAATCTGAGCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAAAGCAGTCCATGGGAAGCAGAGAAGTGAAAAATCTGAGCACC  350

seq1  TTTAAAGCTTGCTAGAGACATGGAAATTCTGAGAGTAAAAGGAAATAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCTTGCTAGAGACATGGAAATTCTGAGAGTAAAAGGAAATAGAA  400

seq1  GCCTTCCATAAGAATCCCAAGCCCTCCAGAACAGCACTTGTAGAGCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCATAAGAATCCCAAGCCCTCCAGAACAGCACTTGTAGAGCTTTC  450

seq1  AGAGACTAAGATGGAACCAGGGAGGACAAGGTGACAGAAAGGGGGCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTAAGATGGAACCAGGGAGGACAAGGTGACAGAAAGGGGGCCAAG  500

seq1  AGAGTATGGGATGGGAGGATTACCCTTAAAGATTAGAGTTATCAGAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATGGGATGGGAGGATTACCCTTAAAGATTAGAGTTATCAGAGTGT  550

seq1  TGATGTCTCAGTGACATTAAGTTGTTATATTGTTCAAACACAAGAAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTCAGTGACATTAAGTTGTTATATTGTTCAAACACAAGAAGTTA  600

seq1  AAGGTCTAAAGATAAACTAAGTGTTCAGGAATAAATACAGAGGCAAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTAAAGATAAACTAAGTGTTCAGGAATAAATACAGAGGCAAGAGG  650

seq1  TGTTGCGAAGGCCAACTGTACTCATTGTACAGTCAGATTTGGCAGCATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCGAAGGCCAACTGTACTCATTGTACAGTCAGATTTGGCAGCATAG  700

seq1  TCTCAGGTACAATGATCTGCATCCAAACCAATGACCATGATCTCTAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGTACAATGATCTGCATCCAAACCAATGACCATGATCTCTAGGCA  750

seq1  GGCAAATGTGTGCTCCTAGGTTACCCAACTCTTGTTAAGAACAATGAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATGTGTGCTCCTAGGTTACCCAACTCTTGTTAAGAACAATGAGGA  800

seq1  GATAGAAAATGTGAATCATAGAGATTTCAAGAACAGTGCTCATACTGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAAATGTGAATCATAGAGATTTCAAGAACAGTGCTCATACTGCCT  850

seq1  TTACAGTTTGCTTTAATTTGGAAATATCTTAGGATTTTTGCATGAACAAA  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTACAGTTTGCTTTAATTTGGAAATATCTTAGGA-TTTTGCATGAACAAA  899

seq1  CTCTGCAAATATCAATATTCCTCTTGCTTCTGTTATACAAAATGTTTAGA  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTCTGCAAATATCAATATTCCTCTTGCTTCTGTTATAC-AAATGTTTAGA  948

seq1  GATGTGCAGCTTAGAGTGAGGCCAGAAAGAACAGGGTTTTCATTCCTCCT  1000
      ||||||||||||||||||| ||||||||||||| ||||||||||||| ||
seq2  GATGTGCAGCTTAGAGTGA-GCCAGAAAGAACA-GGTTTTCATTCCT-CT  995

seq1  CTATCTTGTCTTGCCTTGTCTTATTTTTTTTCTTTTCAGTCATTTTTAAT  1050
      ||||| |||||   |||||| ||||||||||||||||||||| |||||||
seq2  CTATC-TGTCT--GCTTGTC-TATTTTTTTTCTTTTCAGTCA-TTTTAAT  1040

seq1  TTCACATTTAGATTCCTAAATTGTTTCTTTTTCATACATTAGCCTGATGC  1100
      ||| |||||||| ||||||| ||||||||||||||||| ||| |||||||
seq2  TTC-CATTTAGA-TCCTAAA-TGTTTCTTTTTCATACA-TAG-CTGATGC  1085

seq1  TTTGTTTTACTTTTTTTTTTTGTTTTATTTTTT  1133
      ||   ||||| |||||||||||||| |||||||
seq2  TT--GTTTAC-TTTTTTTTTTGTTTAATTTTTT  1115

seq1: chr2_78566859_78567817
seq2: B6Ng01-045L14.g_69_1020 (reverse)

seq1  TGTCTCAAGACAGAAGAACAACAGGATGAATTCTAAATCTTGAAAAGAAA  50
      ||||||| |   |||| ||||||||||||| ||| ||||||||||   ||
seq2  TGTCTCATG--CGAAG-ACAACAGGATGAA-TCTCAATCTTGAAA--GAA  44

seq1  AATATATGCTCAATAATACAAAACCAAACAAAAAAAAAAAAAAAAAAACA  100
      ||||||||||| ||||||||||||| ||| ||||||||||||||||||||
seq2  AATATATGCTC-ATAATACAAAACCCAAC-AAAAAAAAAAAAAAAAAACA  92

seq1  ACTAACCAAACAAACAAAAAAACCCAAATGGGCTAGCAGAACAACTATAT  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCAAACAAACAAAAAAACCCAAATGGGCTAGCAGAACAACTATAT  142

seq1  TTGAAAAGTAAATTG-AAATATTAAAATGTTAAGGAAATAAAATGTGTAA  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGTAAATTGAAAATATTAAAATGTTAAGGAAATAAAATGTGTAA  192

seq1  GCACATAGCATAGGAGAAAACAGACTACGAACATCAGAAAAGAAATCTGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAGCATAGGAGAAAACAGACTACGAACATCAGAAAAGAAATCTGA  242

seq1  AAGAGACTCTTCCTCAACTAATTAGGGTTTCTGAACTGATTGATAAGAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACTCTTCCTCAACTAATTAGGGTTTCTGAACTGATTGATAAGAGG  292

seq1  AAAGTCAGAGGCAAAGGAAGGTGATAGAGAAGGCTTTTCTACTGCTTGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGAGGCAAAGGAAGGTGATAGAGAAGGCTTTTCTACTGCTTGCT  342

seq1  TTCAGTTTAAAACTCATCATACAAGCTAAGTTCAAACGAGAAATTCCCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTAAAACTCATCATACAAGCTAAGTTCAAACGAGAAATTCCCAG  392

seq1  GCATGCCTAGAAATGTGCAGAGAAATAGGGCAATGGGAAAACTGTAAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCTAGAAATGTGCAGAGAAATAGGGCAATGGGAAAACTGTAAGTT  442

seq1  TTTAGTTACAAAGGAATGAGATGTTCGTTCTCTTCAGCAAAGATAGATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTACAAAGGAATGAGATGTTCGTTCTCTTCAGCAAAGATAGATGT  492

seq1  GATGTCCATGGAAGAACTCTGAAAAAGTCTTGAAGATAATGTCCAAGATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCATGGAAGAACTCTGAAAAAGTCTTGAAGATAATGTCCAAGATC  542

seq1  AAAACTAATACCAACAAAACCATTCACACTGGGAAAACACTGAAAAACCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAATACCAACAAAACCATTCACACTGGGAAAACACTGAAAAACCA  592

seq1  AAAGGCCAAGAAATGTATATATATATTAAAAAAAAGCTTGAAAAAAGGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCAAGAAATGTATATATATATTAAAAAAAAGCTTGAAAAAAGGTT  642

seq1  ACTAAATATAAATATTTCTTCAACTATGGCAAGAAAAGCCAGACACATCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATATAAATATTTCTTCAACTATGGCAAGAAAAGCCAGACACATCT  692

seq1  GTGAGACAGCAAATGTCAGTGTTCCCAAATTGAATGAAAATGAAATGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACAGCAAATGTCAGTGTTCCCAAATTGAATGAAAATGAAATGAAA  742

seq1  TAACTTGTCTAAATTAAAATACTAGCAAAAGTCATATCTTAAAGAACACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTCTAAATTAAAATACTAGCAAAAGTCATATCTTAAAGAACACA  792

seq1  GCACAAAAATACTTGAAAGAGAGAAATGAAGTAAAGTTATCAGGTAAATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAAATACTTGAAAGAGAGAAATGAAGTAAAGTTATCAGGTAAATG  842

seq1  ACCACAGGGAGAGACAAGGGGTAAAATTGTCATTATTGGATGAAATAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGGGAGAGACAAGGGGTAAAATTGTCATTATTGGATGAAATAGAA  892

seq1  ATCAAGAAAAATAAAAAAGTGTTCATAAAGACAGAAGGAACAATGAAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAAAAATAAAAAAGTGTTCATAAAGACAGAAGGAACAATGAAAAA  942

seq1  CACTGAATTC  959
      ||||||||||
seq2  CACTGAATTC  952