BAC Information

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BAC

Clone NameB6Ng01-045N01
Chromosome2 (Build37)
Map Location 26,311,255 - 26,445,489
singlet/doubletdoublet
Overlap geneNotch1, Egfl7
Upstream geneClic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582
Downstream geneAgpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh, Vav2, D2Bwg1423e, Brd3, Wdr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045N01.bB6Ng01-045N01.g
ACCDH871160DH871161
length9911,043
definitionDH871160|Mus musculus domesticus DNA, BAC clone: B6Ng01-045N01, 5' end.DH871161|Mus musculus domesticus DNA, BAC clone: B6Ng01-045N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,444,487 - 26,445,489)(26,311,255 - 26,312,312)
sequence
gaattcatgcacctaggcctttttggggtactctataggcagggaggagt
ctgaactccccacatcagagcctgcccttctggctgtgtcctgaggccat
gtgctgctcagactatcctgttagcctgaggagacatcagaagatccaca
tgggcatctgcctagggccattatggagagaggggttgacaaggatttgg
gggaggtaagcactgtccctatgaaggactttgtagccatcacagatggg
aaggagtaaacaccgaggaggggtgcagacgtgctgagaagcccctatcc
atctggaatacgccctttgaggcgatattatgtcagggcaatcctgggtg
tgatttcacagcattcttgggtaccagcctccaaacctgagaggccacct
tgatccctgatgtcaaggatgcctcagtgctttggcctcagctccctagt
cagggtgaacaggctcttgggtcccaggacttgttactggttgggaatgg
tgggatgcggagtgagcactcaccggtaggtgctgcaggctctgtgtccg
tcgcaagtggtgaggtaaggctggtatacacgctgcacaaaggtctccga
gatggaacctccggaaatccccacagtacacactctacggctacagggaa
tggggtcagctagtggtctagagccaggtctcttccagtccaggtacata
cagacatggggatttctcctcagtattggggtctgctgtgggcacagcta
agagcctctggtcatgaccccagtaccccaaggccaagcccttcctcacc
tgggtttgtaacatgcttcagtagtaccatctgccgccacacttgaaacc
atgctacagcagctctccgaagccccacatgtctgcatctgaaagtgggt
aaccttcttctttggggcctaaggaaaaatctcctgtcagtctcctatga
accctcggctcaagctccacagagtcttgtgccttggccac
gaattcaggctccgaccttccccttgagggcaagaatgagacaagttatc
acaattctgtgtgtgagcaccccttctgggcccctgggccccctccgctt
tcacagtgtgcaacactgagccggggcaagacatctgaacttgatggatt
cacacttgtcctcagatgtcaggctcagagagggcatcacattccccatt
gtcactttggttagagactcctgctgtgctccaaggtgtgggccaaatgg
agaggcctaggcaggtgtcttagtcagggtttctattcctgcacaaacat
catgagcaagaaacaagttggggaggaaagggtttattcggcttacactt
ccatactgctgttcatcaccaaggaagtcaggactggaactcaagcaggt
cagggagcaggaactgatgcagaggccatggagggatgttctttactggc
ttggttcccctggcttgctcagcttgctctcttatagaacccaagactac
cagcccagagatggtaccacccacaaagggcccttccccccttgatcact
aagagaaaatgccttacagctggatctcgtggaggcatttccccaactga
aactcctttctttgtgataactccagctgtgtcaagttgacacaaaacta
gccagtacagcaggccaagggagatccacacctgtgctattatgatttct
tcttagggctaagatgcctttgtacctgctgggctctcggactagatgag
tgttgctaaaattccttcccaggaagagacacacttaaccctcctcctaa
ggtcctaggcaccaaagctgactagggcaccaatggaattgcagcgctga
caagagcagaacataggtaagggttacttactgagtccacattggactct
ttacttgtagttgtttgtattacaaatgttaaagttccccgaactgcaca
agaaggtctacacatagctttgggatcttgttccagtgggtctgattgta
ataagataccataaccagtagctgggagacagacaggtgaccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_26444487_26445489
seq2: B6Ng01-045N01.b_43_1033 (reverse)

seq1  GTGGCCAAGGGCAC-AGACTCTGCTGGAGGCCTGAGCCGGGGGTTCCATA  49
      |||||||| ||||| |||||||| |||| || ||||||| ||||| ||||
seq2  GTGGCCAA-GGCACAAGACTCTG-TGGA-GCTTGAGCCGAGGGTT-CATA  46

seq1  GGAGACTGACAGGAGACATTTTGCCTTAGGCCACAAAAAGAAGAAGGCTA  99
      |||||||||||||||  ||||| ||||||||| |  ||||||||||| ||
seq2  GGAGACTGACAGGAG--ATTTTTCCTTAGGCCCC--AAAGAAGAAGGTTA  92

seq1  CCCCACTTACAGATGCAGACCATGTGGGGCTCCGGAGAACTGCTTGTAGC  149
       ||||||| |||||||||| ||||||||||| |||||| |||| ||||||
seq2  -CCCACTTTCAGATGCAGA-CATGTGGGGCTTCGGAGAGCTGC-TGTAGC  139

seq1  ATGGTTTCTAGTGTTGGCAGCAGATGGTACTACTG-AGCATGTCTACAGA  198
      |||||||| |||| |||| |||||||||||||||| ||||||| |||| |
seq2  ATGGTTTCAAGTG-TGGCGGCAGATGGTACTACTGAAGCATGT-TACAAA  187

seq1  CCCAGGTGAGGAAGGGCTTGGGCCTTGGGGTACTGGGGTCATGACCAGAG  248
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCAGGTGAGGAAGGGCTT-GGCCTTGGGGTACTGGGGTCATGACCAGAG  236

seq1  GCTCTTAGCTGTGCCCACAGCAGACCCCAATACCTGAGGAG-AATTCCCA  297
      |||||||||||||||||||||||||||||||| |||||||| ||| ||||
seq2  GCTCTTAGCTGTGCCCACAGCAGACCCCAATA-CTGAGGAGAAATCCCCA  285

seq1  TGTCTGTATGTACCTGGACTGGAAGAGACCTGGCTCTAGACCACTAGCTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTATGTACCTGGACTGGAAGAGACCTGGCTCTAGACCACTAGCTG  335

seq1  ACCCCATTCCCTGTAGCCGTAGAGTGTGTACTGTGGGGATTTCCGGAGGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATTCCCTGTAGCCGTAGAGTGTGTACTGTGGGGATTTCCGGAGGT  385

seq1  TCCATCTCGGAGACCTTTGTGCAGCGTGTATACCAGCCTTACCTCACCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCGGAGACCTTTGTGCAGCGTGTATACCAGCCTTACCTCACCAC  435

seq1  TTGCGACGGACACAGAGCCTGCAGCACCTACCGGTGAGTGCTCACTCCGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGACGGACACAGAGCCTGCAGCACCTACCGGTGAGTGCTCACTCCGC  485

seq1  ATCCCACCATTCCCAACCAGTAACAAGTCCTGGGACCCAAGAGCCTGTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACCATTCCCAACCAGTAACAAGTCCTGGGACCCAAGAGCCTGTTC  535

seq1  ACCCTGACTAGGGAGCTGAGGCCAAAGCACTGAGGCATCCTTGACATCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGACTAGGGAGCTGAGGCCAAAGCACTGAGGCATCCTTGACATCAG  585

seq1  GGATCAAGGTGGCCTCTCAGGTTTGGAGGCTGGTACCCAAGAATGCTGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAGGTGGCCTCTCAGGTTTGGAGGCTGGTACCCAAGAATGCTGTG  635

seq1  AAATCACACCCAGGATTGCCCTGACATAATATCGCCTCAAAGGGCGTATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACACCCAGGATTGCCCTGACATAATATCGCCTCAAAGGGCGTATT  685

seq1  CCAGATGGATAGGGGCTTCTCAGCACGTCTGCACCCCTCCTCGGTGTTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGGATAGGGGCTTCTCAGCACGTCTGCACCCCTCCTCGGTGTTTA  735

seq1  CTCCTTCCCATCTGTGATGGCTACAAAGTCCTTCATAGGGACAGTGCTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCCATCTGTGATGGCTACAAAGTCCTTCATAGGGACAGTGCTTA  785

seq1  CCTCCCCCAAATCCTTGTCAACCCCTCTCTCCATAATGGCCCTAGGCAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCAAATCCTTGTCAACCCCTCTCTCCATAATGGCCCTAGGCAGA  835

seq1  TGCCCATGTGGATCTTCTGATGTCTCCTCAGGCTAACAGGATAGTCTGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATGTGGATCTTCTGATGTCTCCTCAGGCTAACAGGATAGTCTGAG  885

seq1  CAGCACATGGCCTCAGGACACAGCCAGAAGGGCAGGCTCTGATGTGGGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACATGGCCTCAGGACACAGCCAGAAGGGCAGGCTCTGATGTGGGGA  935

seq1  GTTCAGACTCCTCCCTGCCTATAGAGTACCCCAAAAAGGCCTAGGTGCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGACTCCTCCCTGCCTATAGAGTACCCCAAAAAGGCCTAGGTGCAT  985

seq1  GAATTC  1003
      ||||||
seq2  GAATTC  991

seq1: chr2_26311255_26312312
seq2: B6Ng01-045N01.g_68_1110

seq1  GAATTCAGGCTCCGACCTTCCCCTTGAGGGCAAGAATGAGACAAGTTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCTCCGACCTTCCCCTTGAGGGCAAGAATGAGACAAGTTATC  50

seq1  ACAATTCTGTGTGTGAGCACCCCTTCTGGGCCCCTGGGCCCCCTCCGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCTGTGTGTGAGCACCCCTTCTGGGCCCCTGGGCCCCCTCCGCTT  100

seq1  TCACAGTGTGCAACACTGAGCCGGGGCAAGACATCTGAACTTGATGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTGTGCAACACTGAGCCGGGGCAAGACATCTGAACTTGATGGATT  150

seq1  CACACTTGTCCTCAGATGTCAGGCTCAGAGAGGGCATCACATTCCCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTGTCCTCAGATGTCAGGCTCAGAGAGGGCATCACATTCCCCATT  200

seq1  GTCACTTTGGTTAGAGACTCCTGCTGTGCTCCAAGGTGTGGGCCAAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTTGGTTAGAGACTCCTGCTGTGCTCCAAGGTGTGGGCCAAATGG  250

seq1  AGAGGCCTAGGCAGGTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCTAGGCAGGTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACAT  300

seq1  CATGAGCAAGAAACAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCAAGAAACAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACACTT  350

seq1  CCATACTGCTGTTCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTGCTGTTCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGT  400

seq1  CAGGGAGCAGGAACTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGCAGGAACTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGC  450

seq1  TTGGTTCCCCTGGCTTGCTCAGCTTGCTCTCTTATAGAACCCAAGACTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCCCCTGGCTTGCTCAGCTTGCTCTCTTATAGAACCCAAGACTAC  500

seq1  CAGCCCAGAGATGGTACCACCCACAAAGGGCCCTTCCCCCCTTGATCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGAGATGGTACCACCCACAAAGGGCCCTTCCCCCCTTGATCACT  550

seq1  AAGAGAAAATGCCTTACAGCTGGATCTCGTGGAGGCATTTCCCCAACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAATGCCTTACAGCTGGATCTCGTGGAGGCATTTCCCCAACTGA  600

seq1  AACTCCTTTCTTTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTTTCTTTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAACTA  650

seq1  GCCAGTACAGCAGGCCAAGGGAGATCCACACCTGTGCTATTATGATTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTACAGCAGGCCAAGGGAGATCCACACCTGTGCTATTATGATTTCT  700

seq1  TCTTAGGGCTAAGATGCCTTTGTACCTGCTGGGCTCTCGGACTAGATGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGGCTAAGATGCCTTTGTACCTGCTGGGCTCTCGGACTAGATGAG  750

seq1  TGTTGCTAAAATTCCTTCCCAGGAAGAGACAACACTTAACCCTCCTCCTA  800
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTTGCTAAAATTCCTTCCCAGGAAGAGAC-ACACTTAACCCTCCTCCTA  799

seq1  AGGTCCTAGGCACCAAAGCTGACTAGGGCACCAATGGATTTGCAGCGCTG  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGTCCTAGGCACCAAAGCTGACTAGGGCACCAATGGAATTGCAGCGCTG  849

seq1  ACAAGAGCAGAACATAGGTAAAGGGTTACTTACTGAGTCCACATTGGAAC  900
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  ACAAGAGCAGAACATAGGT-AAGGGTTACTTACTGAGTCCACATTGG-AC  897

seq1  TCTTTACTTGTAGCTGTTTGTATTACAAATGTTAATGTTCCCCCGAACTG  950
      ||||||||||||| ||||||||||||||||||||| ||| ||||||||||
seq2  TCTTTACTTGTAGTTGTTTGTATTACAAATGTTAAAGTT-CCCCGAACTG  946

seq1  CACAGGAAGGTCTACACATAGCTTTTGGGAACCTGTCCCCAGTGGGTTCT  1000
      |||| ||||||||||||||||| ||||||| | |||  |||||||| |||
seq2  CACAAGAAGGTCTACACATAGC-TTTGGGATCTTGT-TCCAGTGGG-TCT  993

seq1  GATTGGTAAATAAAGATACCAATAGCCAGTAGCTGGGGAGGACAGACAAG  1050
      |||| ||||   |||||||| ||| ||||||||||||   ||||||| ||
seq2  GATT-GTAA--TAAGATACC-ATAACCAGTAGCTGGG--AGACAGAC-AG  1036

seq1  GTGGACCG  1058
      || |||||
seq2  GT-GACCG  1043