BAC Information

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BAC

Clone NameB6Ng01-045N09
Chromosome2 (Build37)
Map Location 21,844,306 - 21,845,292
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
Downstream geneLOC637235, Myo3a, LOC100041703, Myo3a, Gad2, Apbb1ip, Pdss1, Abi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045N09.bB6Ng01-045N09.g
ACCDH871175DH871176
length921990
definitionDH871175|Mus musculus domesticus DNA, BAC clone: B6Ng01-045N09, 5' end.DH871176|Mus musculus domesticus DNA, BAC clone: B6Ng01-045N09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgcactaaacccatctggtcctggcttttggtggttggtagact
tttaatgacagcttctttttctttaggggttatgggactctttacatggt
ttatctgatcctgatttaagtttggtattgagtatctgtctagaaaattg
tccattttatccagattttccattttttgtatattggttttgttttgttg
ttttgttttgtttttgtttttgagaataggctttgtagtaggatttgatg
atttttttgaatttccttggtttctgttgttatgtcttccttttcatttc
tgatttcttaaatttggatactgtctccgtgtcctctggttagtctggca
aatggtttacctatcttgttgattttctcaaagaaacagttcctggtttt
gttgcttctttgtatagttctttttgtttctacttggctgatttcaggcc
tgagtttgattatttcctgcagtctactcctcttaggtgtatttgcttct
ttttgttctagagctttcatgtgagctatcaagctgctagtgtatgctct
ctccagtttctttttggaggtacttagagctatgagttttccccttacca
ctgctttcattgtgtcccataagattttgtttgatgtgccttcattttca
ttaaattctaaaaagtctttaatttcttttcgttatttcttccttgacca
agttatcattgagtagaacattgttcagcttccatgtgtatgtgggcttt
ccattgtgtttgtgtcattgaagaccagcctttagtctgtatgatctgat
aggatgctaggattatttcatgtacttgtatctgttgagacctgtttgtg
gccattatatggttaatttggagaggtatcatgaggtaatgaaagaatga
tatgttctataatatcctgta
gaattctctacgtagtccaggctggtcttgtactcacaaagatcctcctg
cacctgcttaccaagtgctggaatttaaggcatgtgtctccatgcctggc
ttgatttttaaattgtcaacaaagaaagtaaacatttatgttgattaatc
ttgaatttctctttttaaatgaatgaagtatggagttaaatgtcgatact
aatttttaaaatccaccagttggcagtgtgatgagtgaatgcacattacc
catcaaatttatatattgagttctcaatcttgactgcttcagaaagtaac
ttaatttgaaaacaggtttgtcctgttaggttcccccctcctcaacttga
cacatgctagagttatcggaaaatctcacctaggaaattatctctgtggg
gcaatgggctatgcaaagacaatctggtctccagtcgagctgaggtgtgg
aaccctggtacccgatggtgataatacccgcctacatgggacagaacgag
ttccctcatgtctactggattcaaggctcctgtcaaagttaccgccctcc
acagcccccacaggagaagctgtggctcgtagtcacatagacttcagacc
ttcaggctagactcctcccagttacctagcaacaccaagataacagccca
ccataagaggggctgtttggccccacctcactctctcctcgttttctctt
actctctctccctctcactctctttttcttactctctagcctttcttctc
tctctctttttccccttctttcttcttggccatggttccattcctacaga
ttttaactccagctcccagcagagtgcctactaactattctggactggta
atagtaaataagcagaaaactaaaaagataatgtgtatgctaccacatac
acacagaagagacatacacaccagctgtgcatgcacttacacacacacag
acacagacacacagagcccacacacatatcataaatgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_21844306_21845292
seq2: B6Ng01-045N09.g_68_1057 (reverse)

seq1  TCACATTTATG-TATGTGTGTGGGCTCCTGTGTGTCTGTGTCTGTGTGTG  49
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  TCACATTTATGATATGTGTGTGGGCT-CTGTGTGTCTGTGTCTGTGTGTG  49

seq1  TGTAAGTGCATGCACAGCT-GTGTGTATGTCTC-TCTGTGTGTATGT-GT  96
      ||||||||||||||||||| ||||||||||||| ||||||||||||| ||
seq2  TGTAAGTGCATGCACAGCTGGTGTGTATGTCTCTTCTGTGTGTATGTGGT  99

seq1  AGCATACACATTATC-TTTTAG-TTTCTGCTTATTTACTATTACCAGTCC  144
      ||||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  AGCATACACATTATCTTTTTAGTTTTCTGCTTATTTACTATTACCAGTCC  149

seq1  AGAATAGTTAGTAGGCACCTCTGCTGGGAGCTGGAGTTAAAATCTGTAGG  194
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGAATAGTTAGTAGGCA-CTCTGCTGGGAGCTGGAGTTAAAATCTGTAGG  198

seq1  AATGGAACCATGGCCAAGAAGAAAGAAGGGGGAAAAAGAGAGAGAGAAGA  244
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATGGAACCATGGCCAAGAAGAAAGAA-GGGGAAAAAGAGAGAGAGAAGA  247

seq1  AAGGCTAGAGAGTAAGAAAAAGAGAGTGAGAGGGAGAGAGAGTAAGAGAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTAGAGAGTAAGAAAAAGAGAGTGAGAGGGAGAGAGAGTAAGAGAA  297

seq1  AACGAGGAGAGAGTGAGGTGGGGCCAAACAGCCCCTCTTATGGTGGGCTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGGAGAGAGTGAGGTGGGGCCAAACAGCCCCTCTTATGGTGGGCTG  347

seq1  TTATCTTGGTGTTGCTAGGTAACTGGGAGGAGTCTAGCCTGAAGGTCTGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTGGTGTTGCTAGGTAACTGGGAGGAGTCTAGCCTGAAGGTCTGA  397

seq1  AGTCTATGTGACTACGAGCCACAGCTTCTCCTGTGGGGGCTGTGGAGGGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATGTGACTACGAGCCACAGCTTCTCCTGTGGGGGCTGTGGAGGGC  447

seq1  GGTAACTTTGACAGGAGCCTTGAATCCAGTAGACATGAGGGAACTCGTTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTTTGACAGGAGCCTTGAATCCAGTAGACATGAGGGAACTCGTTC  497

seq1  TGTCCCATGTAGGCGGGTATTATCACCATCGGGTACCAGGGTTCCACACC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCATGTAGGCGGGTATTATCACCATCGGGTACCAGGGTTCCACACC  547

seq1  TCAGCTCGACTGGAGACCAGATTGTCTTTGCATAGCCCATTGCCCCACAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCGACTGGAGACCAGATTGTCTTTGCATAGCCCATTGCCCCACAG  597

seq1  AGATAATTTCCTAGGTGAGATTTTCCGATAACTCTAGCATGTGTCAAGTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTTCCTAGGTGAGATTTTCCGATAACTCTAGCATGTGTCAAGTT  647

seq1  GAGGAGGGGGGAACCTAACAGGACAAACCTGTTTTCAAATTAAGTTACTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGGGGAACCTAACAGGACAAACCTGTTTTCAAATTAAGTTACTT  697

seq1  TCTGAAGCAGTCAAGATTGAGAACTCAATATATAAATTTGATGGGTAATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGCAGTCAAGATTGAGAACTCAATATATAAATTTGATGGGTAATG  747

seq1  TGCATTCACTCATCACACTGCCAACTGGTGGATTTTAAAAATTAGTATCG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCACTCATCACACTGCCAACTGGTGGATTTTAAAAATTAGTATCG  797

seq1  ACATTTAACTCCATACTTCATTCATTTAAAAAGAGAAATTCAAGATTAAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAACTCCATACTTCATTCATTTAAAAAGAGAAATTCAAGATTAAT  847

seq1  CAACATAAATGTTTACTTTCTTTGTTGACAATTTAAAAATCAAGCCAGGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATAAATGTTTACTTTCTTTGTTGACAATTTAAAAATCAAGCCAGGC  897

seq1  ATGGAGACACATGCCTTAAATTCCAGCACTTGGTAAGCAGGTGCAGGAGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGACACATGCCTTAAATTCCAGCACTTGGTAAGCAGGTGCAGGAGG  947

seq1  ATCTTTGTGAGTACAAGACCAGCCTGGACTACGTAGAGAATTC  987
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGTGAGTACAAGACCAGCCTGGACTACGTAGAGAATTC  990