BAC Information

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BAC

Clone NameB6Ng01-045O01
Chromosome2 (Build37)
Map Location 172,582,996 - 172,738,582
singlet/doubletdoublet
Overlap geneBmp7
Upstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750
Downstream geneLOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045O01.bB6Ng01-045O01.g
ACCDH871206DH871207
length1,067819
definitionDH871206|Mus musculus domesticus DNA, BAC clone: B6Ng01-045O01, 5' end.DH871207|Mus musculus domesticus DNA, BAC clone: B6Ng01-045O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,582,996 - 172,584,085)(172,737,766 - 172,738,582)
sequence
gaattctcagggctggatggggagcctctccagcctctgtgtttctgtct
tccttagagcttgcccttgatttcctgggtccttcattctctaaccagaa
ggcaggcggctgacagactgaatggaaccccaggacctgtctgtaagctg
tatggatggctatgtattgatgagccaattaatgacagaaaagggctgag
tcccgagaatctgcttccttcagtggtgacttggtcatcgtgcaccaacc
attatcagcactttctcaatctgagggcgtgacagacagtgggccaaggg
gcttatgggaaacaagctgcatgcttctctcttgtaggacaagctggatg
gccagcattatctaggatgttgccacagtgctctggggtgctaatctaat
ggcacactgaaaaacaagtgttccatgccagggacttaacccaccagacc
aatctgttaccctgagccttccacatccatcagaccccagagctacttac
tgttttcactgtccccatttcgcagatgagaaaacgaaggctctgagatg
ctgctgccttgctcagctgcacccctggctgtggctggagttctctttaa
atgacagttgcatctgaaacctactgttcccaattgtccccaactgtctc
cacaaacccagagtttctgctagaaggaatgaaatcccacaggaagtcct
gagttcctgatgcagaggctgcctggccttcccgaaggtttagtctgttg
gcttactgtcacttattttgagacaaggtctcccactgaaagcacaattc
ccagaagtgtagattgcccccgcccccctccagcaagcccctgagatgtt
cttgtctctaccccatacctcagagctgagattagagcatactctggttt
ccatgtcagagctgggatccacactcagtctcgagcttagggaaaggatt
tccctgcagagcaactcccagccctgtttcttgcacattgcagattgact
gaggacctttgaaagtcgacctgtctttattctatgctctcagcctcaat
ggggaccgtgtctctcc
gaattcaggaacaggtgaagagagaagcgaatggctgggatctgtggctg
aaggtggtggcatgacaaatatctgtattgtggccaccaatgtccttagg
gtgtttgaatgacagaagctctgtcaatagaggaagagcaagggtcctat
gatcacatgaggcagcatgaagagacctgttgcttctggaacgggatggg
ttttctacactcaggccttgtggaaaagataaggctttgtgtgtcttctc
tccagtcctgagatcacgtgatgggttcatgccatttctgggcaatgagg
aggtatggattgtagttgacagagggacgacgtgtggtatagaagtcttc
agctccctggtgtgctggtatcatggtggcttattgctgagggcctgcct
ctgggggtggggctcaaggccgaggaggggacacagagcagctggaagtg
gccttgagggaaaagagttgattgacagtaggtaggcgggaatagtgggc
tagtaggtgttcttcctgagccccgcaggcaggagcgctgaaacccttct
ccaggagttgaagagctttgagctttagcttgagcttgcttccttagtta
agtttgttttcttagttgcttttgaacctggtacttctctggaggcatgg
gcgcgggccaacccggctttaagaacatgggtttctgatcctgctagagt
ggccacagccttggagactcagtttcttcctctgagaaggaatgatcacg
gcgtctccctcacagggttatggagaagtttttagagaatattttccaca
gtaaatgcttcactaaccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_172582996_172584085
seq2: B6Ng01-045O01.b_47_1113

seq1  GAATTCTCAGGGCTGGATGGGGAGCCTCTCCAGCCTCTGTGTTTCTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGGCTGGATGGGGAGCCTCTCCAGCCTCTGTGTTTCTGTCT  50

seq1  TCCTTAGAGCTTGCCCTTGATTTCCTGGGTCCTTCATTCTCTAACCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGAGCTTGCCCTTGATTTCCTGGGTCCTTCATTCTCTAACCAGAA  100

seq1  GGCAGGCGGCTGACAGACTGAATGGAACCCCAGGACCTGTCTGTAAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCGGCTGACAGACTGAATGGAACCCCAGGACCTGTCTGTAAGCTG  150

seq1  TATGGATGGCTATGTATTGATGAGCCAATTAATGACAGAAAAGGGCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATGGCTATGTATTGATGAGCCAATTAATGACAGAAAAGGGCTGAG  200

seq1  TCCCGAGAATCTGCTTCCTTCAGTGGTGACTTGGTCATCGTGCACCAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGAATCTGCTTCCTTCAGTGGTGACTTGGTCATCGTGCACCAACC  250

seq1  ATTATCAGCACTTTCTCAATCTGAGGGCGTGACAGACAGTGGGCCAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAGCACTTTCTCAATCTGAGGGCGTGACAGACAGTGGGCCAAGGG  300

seq1  GCTTATGGGAAACAAGCTGCATGCTTCTCTCTTGTAGGACAAGCTGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGGGAAACAAGCTGCATGCTTCTCTCTTGTAGGACAAGCTGGATG  350

seq1  GCCAGCATTATCTAGGATGTTGCCACAGTGCTCTGGGGTGCTAATCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCATTATCTAGGATGTTGCCACAGTGCTCTGGGGTGCTAATCTAAT  400

seq1  GGCACACTGAAAAACAAGTGTTCCATGCCAGGGACTTAACCCACCAGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACTGAAAAACAAGTGTTCCATGCCAGGGACTTAACCCACCAGACC  450

seq1  AATCTGTTACCCTGAGCCTTCCACATCCATCAGACCCCAGAGCTACTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTTACCCTGAGCCTTCCACATCCATCAGACCCCAGAGCTACTTAC  500

seq1  TGTTTTCACTGTCCCCATTTCGCAGATGAGAAAACGAAGGCTCTGAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCACTGTCCCCATTTCGCAGATGAGAAAACGAAGGCTCTGAGATG  550

seq1  CTGCTGCCTTGCTCAGCTGCACCCCTGGCTGTGGCTGGAGTTCTCTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCTTGCTCAGCTGCACCCCTGGCTGTGGCTGGAGTTCTCTTTAA  600

seq1  ATGACAGTTGCATCTGAAACCTACTGTTCCCAATTGTCCCCAACTGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGTTGCATCTGAAACCTACTGTTCCCAATTGTCCCCAACTGTCTC  650

seq1  CACAAACCCAGAGTTTCTGCTAGAAGGAATGAAATCCCACAGGAAGTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACCCAGAGTTTCTGCTAGAAGGAATGAAATCCCACAGGAAGTCCT  700

seq1  GAGTTCCTGATGCAGAGGCTGCCTGGCCTTCCCGAAGGTTTAGTCTGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCTGATGCAGAGGCTGCCTGGCCTTCCCGAAGGTTTAGTCTGTTG  750

seq1  GCTTACTGTCACTTATTTTGAGACAAGGTCTCCCACTGAAAGCACAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTGTCACTTATTTTGAGACAAGGTCTCCCACTGAAAGCACAATTC  800

seq1  CCAGAAGTGTAGATTGCCCCCGCCCCCCTCCAGCAAGCCCCTGAGATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTGTAGATTGCCCCCGCCCCCCTCCAGCAAGCCCCTGAGATGTT  850

seq1  CTTGTCTCTACCCCATACCTCAGAGCTGAGATTAGAGGCATACTCTGGTT  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTGTCTCTACCCCATACCTCAGAGCTGAGATTAGA-GCATACTCTGGTT  899

seq1  TCCATGTCAGAGCCTGGGATCCACACTCAGGTTCTCGAGCTTAGGGAAAA  950
      |||||||||||| |||||||||||||||||  |||||||||||||| |||
seq2  TCCATGTCAGAG-CTGGGATCCACACTCAG--TCTCGAGCTTAGGG-AAA  945

seq1  GGATTTTCCCTGCAGAGCAACTCCCCAGCCCTGGTTTTCTTTGCACATTT  1000
      ||| |||||||||||||||||| ||||||||||  |||| ||||||| ||
seq2  GGA-TTTCCCTGCAGAGCAACT-CCCAGCCCTG--TTTC-TTGCACA-TT  989

seq1  GCAGAATGACCTGAAGGGACGTGTGAAAAGTCGACTTTGTCTTTAATTTC  1050
      ||||| ||| ||||  |||| | || |||||||||  ||||||||  |||
seq2  GCAGATTGA-CTGA--GGACCTTTG-AAAGTCGAC-CTGTCTTTA--TTC  1032

seq1  TAAGGCTCTCAGCCTCCAATGGGAGACCTGTGTCCTCTCC  1090
      | | ||||||||||| ||||||| |||| |||| ||||||
seq2  T-ATGCTCTCAGCCT-CAATGGG-GACC-GTGT-CTCTCC  1067

seq1: chr2_172737766_172738582
seq2: B6Ng01-045O01.g_68_886 (reverse)

seq1  CGGTTAGTG-AGCATTTACTGTGGAAAATATTCTCTAAAAACCTTCTCCA  49
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  CGGTTAGTGAAGCATTTACTGTGGAAAATATTCTCTAAAAA-CTTCTCCA  49

seq1  TAACCCTGTGAGGGAGACGCCGTGATCATTCCTTCTCAGAGG-AGAAACT  98
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAACCCTGTGAGGGAGACGCCGTGATCATTCCTTCTCAGAGGAAGAAACT  99

seq1  GAGTCTCCAAGGCTGTGGCCACTCTAGCAGGATCAG-AACCCATGTTCTT  147
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGTCTCCAAGGCTGTGGCCACTCTAGCAGGATCAGAAACCCATGTTCTT  149

seq1  AAAGCCGGGTTGGCCCGCGCCCATGCCTCCAGAGAAGTACCAGGTTCAAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCGGGTTGGCCCGCGCCCATGCCTCCAGAGAAGTACCAGGTTCAAA  199

seq1  AGCAACTAAGAAAACAAACTTAACTAAGGAAGCAAGCTCAAGCTAAAGCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTAAGAAAACAAACTTAACTAAGGAAGCAAGCTCAAGCTAAAGCT  249

seq1  CAAAGCTCTTCAACTCCTGGAGAAGGGTTTCAGCGCTCCTGCCTGCGGGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTCTTCAACTCCTGGAGAAGGGTTTCAGCGCTCCTGCCTGCGGGG  299

seq1  CTCAGGAAGAACACCTACTAGCCCACTATTCCCGCCTACCTACTGTCAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAAGAACACCTACTAGCCCACTATTCCCGCCTACCTACTGTCAAT  349

seq1  CAACTCTTTTCCCTCAAGGCCACTTCCAGCTGCTCTGTGTCCCCTCCTCG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTTTTCCCTCAAGGCCACTTCCAGCTGCTCTGTGTCCCCTCCTCG  399

seq1  GCCTTGAGCCCCACCCCCAGAGGCAGGCCCTCAGCAATAAGCCACCATGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAGCCCCACCCCCAGAGGCAGGCCCTCAGCAATAAGCCACCATGA  449

seq1  TACCAGCACACCAGGGAGCTGAAGACTTCTATACCACACGTCGTCCCTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCACACCAGGGAGCTGAAGACTTCTATACCACACGTCGTCCCTCT  499

seq1  GTCAACTACAATCCATACCTCCTCATTGCCCAGAAATGGCATGAACCCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTACAATCCATACCTCCTCATTGCCCAGAAATGGCATGAACCCAT  549

seq1  CACGTGATCTCAGGACTGGAGAGAAGACACACAAAGCCTTATCTTTTCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGATCTCAGGACTGGAGAGAAGACACACAAAGCCTTATCTTTTCCA  599

seq1  CAAGGCCTGAGTGTAGAAAACCCATCCCGTTCCAGAAGCAACAGGTCTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCTGAGTGTAGAAAACCCATCCCGTTCCAGAAGCAACAGGTCTCT  649

seq1  TCATGCTGCCTCATGTGATCATAGGACCCTTGCTCTTCCTCTATTGACAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTGCCTCATGTGATCATAGGACCCTTGCTCTTCCTCTATTGACAG  699

seq1  AGCTTCTGTCATTCAAACACCCTAAGGACATTGGTGGCCACAATACAGAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGTCATTCAAACACCCTAAGGACATTGGTGGCCACAATACAGAT  749

seq1  ATTTGTCATGCCACCACCTTCAGCCACAGATCCCAGCCATTCGCTTCTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCATGCCACCACCTTCAGCCACAGATCCCAGCCATTCGCTTCTCT  799

seq1  CTTCACCTGTTCCTGAATTC  817
      ||||||||||||||||||||
seq2  CTTCACCTGTTCCTGAATTC  819