BAC Information

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BAC

Clone NameB6Ng01-045P08
Chromosome2 (Build37)
Map Location 177,981,757 - 178,110,490
singlet/doubletdoublet
Overlap genePhactr3, Sycp2
Upstream geneLOC100043403, LOC100039198, LOC100043406, LOC668066, LOC621442, LOC628308, OTTMUSG00000016571, LOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik
Downstream genePpp1r3d, 9030418K01Rik, Cdh26, LOC100039368, LOC665264, LOC100043168, LOC100039413
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045P08.bB6Ng01-045P08.g
ACCDH871260DH871261
length1,1471,085
definitionDH871260|Mus musculus domesticus DNA, BAC clone: B6Ng01-045P08, 5' end.DH871261|Mus musculus domesticus DNA, BAC clone: B6Ng01-045P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,109,317 - 178,110,490)(177,981,757 - 177,982,852)
sequence
gaattctgtttagttctataccccatttttaaattgggttatttggtttt
ctggagtctaactacttgaggggattttatttcattttttatatactttg
gatattagccctctatccagtgtatggttagtaaagatcctttttctatc
tgctggttgtcattttgtcctattgacagtgtcctttgctttataaaagc
ttttcagtttcatgagttcccatttgtcaattgttgatctcagagcctga
gtcattggtgttctattcaggaaatttccccctgttccaatgtgttggag
gctctttcccactttctcttctattagattcagtgtatctggttttatgt
tgaggttcttgatccacttggacttgagctttgtacaaggagataaatat
cgatcaatttgcagtcttctacatgcagactgccagttagaccagaacca
tttgttgaagatgctttctttttccactgtatgatgttggttaattcgca
ataagataggatatacaaagatgtacttaggtatgtacctgtgcagtaac
agaaattgtacttttctagtatttttaatctgataatttatataattttt
acatgctgtatgatagctttttcatacttaattgcttagcattttctcaa
caaacatttgagtattatataaaagcatcatgtctttaaaactcatgcac
taatgtttgatactatattgagcaaataaagtgttttctagattgcctgg
tgttttagacatctcaaaaaatacaacacactccagatgggcatgttgga
cacctgtaacaactatcaaactctgcaataaccagagaagccgtgcttta
cctggagacacttgtacccaaggtgaaaacagtctttacagttatacagt
agtgtttagggaaacaacacacagcttaaatacctaacgatttgtttcag
aaagatttagatgtacaatatatcattgtagagactttctcattcttcca
ctagatactggtgtcacaaaatgcactaacaaaatcagtatcggatgatg
attctgaagaacacaaaggaaatatagtaagatgttatcagtggtacaag
tcgatgagcgaattttgtgtagaactttaagaacaaacatcctaaat
gaattcaggggcccaggggtcacagaagaccataaagtgtcctgtcttgc
ttccaagtgtgtgcccagccttggtctcttccctttgttcttattcacct
tctgttctgaccacttgttgtttctggcatggtgcagagttgggacctgc
gtgggtctaggaggtgtattttcttatagaaagactcctgtttgcttcac
acagaaaaagtcgtagggaggaatttctgtcaaagcgagctgacccaaga
tgtgtgtatggataagctcacccagaggagggaacttcctgcagtttccg
gaaacagaaaggaaagtattactgttcctactttttaaataaacatctag
catccctcccaaccctcacccctggcagtggccacttcctgcctctatac
taagcagcgtgatcatgagagacctgtagggggcgctaaccctgcctctg
aagggtgtaccggcctggccctgtttagccttccttgggcgtgtgtgaca
ccatccagctgttacggtcactcggcagttttccaggtgtagaggccaca
gaggagggtgcttctgcatgtgacacttggaacattttaaatctgatttt
gaaggttcatatcctgcatgctgggtatttagggatggctgtcaaacctg
agcctgctgccttgccacaagaaatggacctcttggcctctgatgcttcc
caatattttgttccaaatcgcattggtggtttagtcccccaagtacccgt
ctccccactcccttttctctctgatggcagcttgtgatcagctgagaggg
agtatacagaggttagatgaggcctctggctcttatcatccatacacagt
cactgcctctgaccaggaggagttgcttgtacatagtcacggaagtgggg
attgtttctggagctgctagtgttggagttctgggtcctgtagccaaaca
agctagtgggcctctagtctcatggacaattagacaaattaaaacgaacc
aagagatttattcagtgtgcacttctgaggagagaaagactcccaagtca
tcatcctagctctgaaagagatttaagtttaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_178109317_178110490
seq2: B6Ng01-045P08.b_43_1189 (reverse)

seq1  ATTTAGGATGATTTTGTTCTTGAATGTTTCTTTCACAAAATTCTGCTTCA  50
      ||||||||||  ||||||||| || |||   | |||||||||| || |||
seq2  ATTTAGGATG--TTTGTTCTT-AAAGTT--CTACACAAAATTC-GC-TCA  43

seq1  TCTGACTTGTTACACTTGATTACATCTTTACTATATTTTCCCTTTTGTGT  100
      || |||||||  ||| |||| ||||| |||||||||||   | |||||| 
seq2  TC-GACTTGTACCAC-TGATAACATC-TTACTATATTT---CCTTTGTG-  86

seq1  TTCTTCAGAATCATCATCTGATACTGATTTTTGTTTAGTGCATTTTTTGT  150
      |||||||||||||||||| ||||||||||||   ||||||||||||    
seq2  TTCTTCAGAATCATCATCCGATACTGATTTT--GTTAGTGCATTTT---G  131

seq1  TGACACCAGTATCTAGTGGAAGAATGAGAAAGTCTTCTACAATGAATATA  200
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  TGACACCAGTATCTAGTGGAAGAATGAGAAAGTC-TCTACAATG-ATATA  179

seq1  TTGGTAACATCTAAATCTTTTCTGTAAACAAAATCGTTAGGTATTTAAGC  250
      |||   ||||||||||| |||||| |||| ||||||||||||||||||||
seq2  TTG--TACATCTAAATC-TTTCTG-AAAC-AAATCGTTAGGTATTTAAGC  224

seq1  TGTGTGTTGTTTCCCTAAACACTACTGTATTAACTGTAAAGACTGTTTTC  300
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGTGTGTTGTTTCCCTAAACACTACTGTA-TAACTGTAAAGACTGTTTTC  273

seq1  ACCTTGGGTACAAGTGTCTCCAGGTAAAGCACGGCTTCTCTGGTTATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGGTACAAGTGTCTCCAGGTAAAGCACGGCTTCTCTGGTTATTGC  323

seq1  AGAGTTTGATAGTTGTTACAGGTGTCCAACATGCCCATCTGGAGTGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGATAGTTGTTACAGGTGTCCAACATGCCCATCTGGAGTGTGTT  373

seq1  GTATTTTTTGAGATGTCTAAAACACCAGGCAATCTAGAAAACACTTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTTGAGATGTCTAAAACACCAGGCAATCTAGAAAACACTTTATT  423

seq1  TGCTCAATATAGTATCAAACATTAGTGCATGAGTTTTAAAGACATGATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAATATAGTATCAAACATTAGTGCATGAGTTTTAAAGACATGATGC  473

seq1  TTTTATATAATACTCAAATGTTTGTTGAGAAAATGCTAAGCAATTAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATAATACTCAAATGTTTGTTGAGAAAATGCTAAGCAATTAAGTA  523

seq1  TGAAAAAGCTATCATACAGCATGTAAAAATTATATAAATTATCAGATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAGCTATCATACAGCATGTAAAAATTATATAAATTATCAGATTAA  573

seq1  AAATACTAGAAAAGTACAATTTCTGTTACTGCACAGGTACATACCTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTAGAAAAGTACAATTTCTGTTACTGCACAGGTACATACCTAAGT  623

seq1  ACATCTTTGTATATCCTATCTTATTGCGAATTAACCAACATCATACAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTGTATATCCTATCTTATTGCGAATTAACCAACATCATACAGTG  673

seq1  GAAAAAGAAAGCATCTTCAACAAATGGTTCTGGTCTAACTGGCAGTCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAAAGCATCTTCAACAAATGGTTCTGGTCTAACTGGCAGTCTGC  723

seq1  ATGTAGAAGACTGCAAATTGATCGATATTTATCTCCTTGTACAAAGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAGACTGCAAATTGATCGATATTTATCTCCTTGTACAAAGCTCA  773

seq1  AGTCCAAGTGGATCAAGAACCTCAACATAAAACCAGATACACTGAATCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAGTGGATCAAGAACCTCAACATAAAACCAGATACACTGAATCTA  823

seq1  ATAGAAGAGAAAGTGGGAAAGAGCCTCCAACACATTGGAACAGGGGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGAGAAAGTGGGAAAGAGCCTCCAACACATTGGAACAGGGGGAAA  873

seq1  TTTCCTGAATAGAACACCAATGACTCAGGCTCTGAGATCAACAATTGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGAATAGAACACCAATGACTCAGGCTCTGAGATCAACAATTGACA  923

seq1  AATGGGAACTCATGAAACTGAAAAGCTTTTATAAAGCAAAGGACACTGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAACTCATGAAACTGAAAAGCTTTTATAAAGCAAAGGACACTGTC  973

seq1  AATAGGACAAAATGACAACCAGCAGATAGAAAAAGGATCTTTACTAACCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGACAAAATGACAACCAGCAGATAGAAAAAGGATCTTTACTAACCA  1023

seq1  TACACTGGATAGAGGGCTAATATCCAAAGTATATAAAAAATGAAATAAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGGATAGAGGGCTAATATCCAAAGTATATAAAAAATGAAATAAAA  1073

seq1  TCCCCTCAAGTAGTTAGACTCCAGAAAACCAAATAACCCAATTTAAAAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCAAGTAGTTAGACTCCAGAAAACCAAATAACCCAATTTAAAAAT  1123

seq1  GGGGTATAGAACTAAACAGAATTC  1174
      ||||||||||||||||||||||||
seq2  GGGGTATAGAACTAAACAGAATTC  1147

seq1: chr2_177981757_177982852
seq2: B6Ng01-045P08.g_66_1150

seq1  GAATTCAGGGGCCCAGGGGTCACAGAAGACCATAAAGTGTCCTGTCTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGGCCCAGGGGTCACAGAAGACCATAAAGTGTCCTGTCTTGC  50

seq1  TTCCAAGTGTGTGCCCAGCCTTGGTCTCTTCCCTTTGTTCTTATTCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGTGTGTGCCCAGCCTTGGTCTCTTCCCTTTGTTCTTATTCACCT  100

seq1  TCTGTTCTGACCACTTGTTGTTTCTGGCATGGTGCAGAGTTGGGACCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTGACCACTTGTTGTTTCTGGCATGGTGCAGAGTTGGGACCTGC  150

seq1  GTGGGTCTAGGAGGTGTATTTTCTTATAGAAAGACTCCTGTTTGCTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCTAGGAGGTGTATTTTCTTATAGAAAGACTCCTGTTTGCTTCAC  200

seq1  ACAGAAAAAGTCGTAGGGAGGAATTTCTGTCAAAGCGAGCTGACCCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAAGTCGTAGGGAGGAATTTCTGTCAAAGCGAGCTGACCCAAGA  250

seq1  TGTGTGTATGGATAAGCTCACCCAGAGGAGGGAACTTCCTGCAGTTTCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGGATAAGCTCACCCAGAGGAGGGAACTTCCTGCAGTTTCCG  300

seq1  GAAACAGAAAGGAAAGTATTACTGTTCCTACTTTTTAAATAAACATCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGAAAGGAAAGTATTACTGTTCCTACTTTTTAAATAAACATCTAG  350

seq1  CATCCCTCCCAACCCTCACCCCTGGCAGTGGCCACTTCCTGCCTCTATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCCCAACCCTCACCCCTGGCAGTGGCCACTTCCTGCCTCTATAC  400

seq1  TAAGCAGCGTGATCATGAGAGACCTGTAGGGGGCGCTAACCCTGCCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGCGTGATCATGAGAGACCTGTAGGGGGCGCTAACCCTGCCTCTG  450

seq1  AAGGGTGTACCGGCCTGGCCCTGTTTAGCCTTCCTTGGGCGTGTGTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGTACCGGCCTGGCCCTGTTTAGCCTTCCTTGGGCGTGTGTGACA  500

seq1  CCATCCAGCTGTTACGGTCACTCGGCAGTTTTCCAGGTGTAGAGGCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAGCTGTTACGGTCACTCGGCAGTTTTCCAGGTGTAGAGGCCACA  550

seq1  GAGGAGGGTGCTTCTGCATGTGACACTTGGAACATTTTAAATCTGATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGTGCTTCTGCATGTGACACTTGGAACATTTTAAATCTGATTTT  600

seq1  GAAGGTTCATATCCTGCATGCTGGGTATTTAGGGATGGCTGTCAAACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTCATATCCTGCATGCTGGGTATTTAGGGATGGCTGTCAAACCTG  650

seq1  AGCCTGCTGCCTTGCCACAAGAAATGGACCTCTTGGCCTCTGATGCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCTGCCTTGCCACAAGAAATGGACCTCTTGGCCTCTGATGCTTCC  700

seq1  CAATATTTTGTTCCAAATCGCATTGGTGGTTTAGTCCCCCAAGTACCCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTTGTTCCAAATCGCATTGGTGGTTTAGTCCCCCAAGTACCCGT  750

seq1  CTCCCCACTCCCTTTTCTCTCTGATGGCAGCTTGTGATCAGCTGAGAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCCCCACTCCCTTTTCTCTCTGATGGCAGCTTGTGATCAGCTGAGA-GG  799

seq1  GAGTATACAGAGGTTAGATGAGGCCTCTGGCTCTTATCATCCAATACACA  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAGTATACAGAGGTTAGATGAGGCCTCTGGCTCTTATCATCC-ATACACA  848

seq1  GTCACTGCCTCTGACCAGGA-GAGTTGC-TGTACATAGTCACGG-AGTGG  897
      |||||||||||||||||||| ||||||| ||||||||||||||| |||||
seq2  GTCACTGCCTCTGACCAGGAGGAGTTGCTTGTACATAGTCACGGAAGTGG  898

seq1  GGA-TGTTTCTGGAGCTGCTAGTGTTGGAG-TCTGGGTCCTGTAGCCCAG  945
      ||| |||||||||||||||||||||||||| |||||||||||||| ||| 
seq2  GGATTGTTTCTGGAGCTGCTAGTGTTGGAGTTCTGGGTCCTGTAG-CCAA  947

seq1  ACAAGCTAGGTTGGGCCTCTAGTCTTCAATGGGACAATTAAGACAAAGTA  995
      |||||||||  ||||||||||||| |||   |||||||| ||||||| ||
seq2  ACAAGCTAG--TGGGCCTCTAGTC-TCA--TGGACAATT-AGACAAATTA  991

seq1  AAAACAGAACAAAGAGATTTATTCAGTGTGGCCAC-TCTGAGGAGAGGAA  1044
      |||   |||| |||||||||||||||||||  ||| |||||||||||  |
seq2  AAA--CGAACCAAGAGATTTATTCAGTGTG--CACTTCTGAGGAGAG--A  1035

seq1  CAGACTCCCAAGTCCATCATCCTAGTCTTGATAGGAGATTTAGGTTTAAA  1094
       |||||||||||| |||||||||||   ||| | |||||||| |||||||
seq2  AAGACTCCCAAGT-CATCATCCTAGCTCTGA-AAGAGATTTAAGTTTAAA  1083

seq1  AA  1096
      ||
seq2  AA  1085