BAC Information

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BAC

Clone NameB6Ng01-046D10
Chromosome2 (Build37)4 (Build37)
Map Location 142,776,651 - 142,777,698122,508,171 - 122,508,842
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046D10.bB6Ng01-046D10.g
ACCDH871444DH871445
length934918
definitionDH871444|Mus musculus domesticus DNA, BAC clone: B6Ng01-046D10, 5' end.DH871445|Mus musculus domesticus DNA, BAC clone: B6Ng01-046D10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,651 - 142,777,698)(122,508,171 - 122,508,842)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtgtctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatctctttaatttcttcttcaggacttgaagttttatcatacaga
tctttcacttcttcgtagagtcacgcgagatatt
gaattcaaggaagccttgcacacatgagaccacacacacacacacacaca
cacacacacacacacaaacacgcatgcacacacacagcctcaccatgttt
ttggtatacctagagttgaacttatttttcttgaatccatctcccttact
gcagtaatattgaataaaatgtgtctttattgcctttgtgtttgaatata
tattcccctttttcctctttctctttctttctttttttgatgtgtagtat
gtgcaagtatgaaagcatgtttgggggctgcaggtgtgtgtgcacatgtg
tggaggccagtggtcaaccttgagtgtaattcctcagtagctatctgcct
ggaacctggactcattggttaggctagactgtctggtcagtaagtcccag
gtagcctccactctctgcctccctagcactgcgcttacaacatgcaccgt
tagatttggggattcaacttatgtccttgttctgcaagaacttttaagtt
caactatcttcaagtctccaatccccccacccccattttgttattgagat
tgcctcactctactgtttgtgggaaattttaaaaaagagccggcatgttc
ctgctctagtgctggcaccagcaggccacaacactatgccccgtggggtc
ctgctggctctgtcccacattccagtaaccaaactgtgccaccaacctcg
aggttagatatcacaatacccagtaacccggtaaaatcaaaactcttaaa
gcttatagttaaccaatcagctttatgaatcaataaaatcacaatttaca
agatgccaatacaataattttagaaccatttgataatgataaaagcttta
ttccaattatcctaactttatatcataactacttgtagctggttaaagcc
acgttggttcatgtctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776651_142777698
seq2: B6Ng01-046D10.b_45_632 (reverse)

seq1  AAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAG  50
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAACTGCATGGTACTGGTATAGACACAGACAAGTAGACCAATGGAATAG  50

seq1  AATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCG  100

seq1  ACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCATTTTCAACAAT  150
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  ACAAGGGAGCCAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAAT  150

seq1  TGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGGGAATCGATCC  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCC  200

seq1  ATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTC  250

seq1  ACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGC  300

seq1  CTTGAAGATATGGGCACAGGGGACAAATTCCTGAACAGAACAGCAATGGC  350
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGC  350

seq1  TTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAA  400

seq1  GTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACA  450
      |||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  GTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACA  450

seq1  GATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATC  500
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATC  500

seq1  CAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACC  550
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACC  550

seq1  CCATTAAAAAATGGGGCTCACAAAACCATCCAGTGGAAGAAAGACAGCAT  600
      || ||||||||||||||||| ||            ||| |||||    ||
seq2  CCCTTAAAAAATGGGGCTCAGAA----------CTGAACAAAGA----AT  586

seq1  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGC  650
      |                                                 
seq2  TC------------------------------------------------  588

seq1  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  700
                                                        
seq2  --------------------------------------------------  588

seq1  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  750
                                                        
seq2  --------------------------------------------------  588

seq1  GGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAA  800
                                                        
seq2  --------------------------------------------------  588

seq1  GAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATG  850
                                                        
seq2  --------------------------------------------------  588

seq1  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAG  900
                                                        
seq2  --------------------------------------------------  588

seq1  ACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  950
                                                        
seq2  --------------------------------------------------  588

seq1  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAA  1000
                                                        
seq2  --------------------------------------------------  588

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1048
                                                      
seq2  ------------------------------------------------  588

seq1: chr4_122508171_122508842
seq2: B6Ng01-046D10.g_66_737 (reverse)

seq1  GAATGTGGGACAGAGCCAGCAGGACCCCACGGGGCATAGTGTTGTGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGGGACAGAGCCAGCAGGACCCCACGGGGCATAGTGTTGTGGCCT  50

seq1  GCTGGTGCCAGCACTAGAGCAGGAACATGCCGGCTCTTTTTTAAAATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGCCAGCACTAGAGCAGGAACATGCCGGCTCTTTTTTAAAATTTC  100

seq1  CCACAAACAGTAGAGTGAGGCAATCTCAATAACAAAATGGGGGTGGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAACAGTAGAGTGAGGCAATCTCAATAACAAAATGGGGGTGGGGGG  150

seq1  ATTGGAGACTTGAAGATAGTTGAACTTAAAAGTTCTTGCAGAACAAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGACTTGAAGATAGTTGAACTTAAAAGTTCTTGCAGAACAAGGAC  200

seq1  ATAAGTTGAATCCCCAAATCTAACGGTGCATGTTGTAAGCGCAGTGCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTGAATCCCCAAATCTAACGGTGCATGTTGTAAGCGCAGTGCTAG  250

seq1  GGAGGCAGAGAGTGGAGGCTACCTGGGACTTACTGACCAGACAGTCTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAGAGTGGAGGCTACCTGGGACTTACTGACCAGACAGTCTAGC  300

seq1  CTAACCAATGAGTCCAGGTTCCAGGCAGATAGCTACTGAGGAATTACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAATGAGTCCAGGTTCCAGGCAGATAGCTACTGAGGAATTACACT  350

seq1  CAAGGTTGACCACTGGCCTCCACACATGTGCACACACACCTGCAGCCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTGACCACTGGCCTCCACACATGTGCACACACACCTGCAGCCCCC  400

seq1  AAACATGCTTTCATACTTGCACATACTACACATCAAAAAAAGAAAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCTTTCATACTTGCACATACTACACATCAAAAAAAGAAAGAAAG  450

seq1  AGAAAGAGGAAAAAGGGGAATATATATTCAAACACAAAGGCAATAAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGGAAAAAGGGGAATATATATTCAAACACAAAGGCAATAAAGAC  500

seq1  ACATTTTATTCAATATTACTGCAGTAAGGGAGATGGATTCAAGAAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTATTCAATATTACTGCAGTAAGGGAGATGGATTCAAGAAAAATA  550

seq1  AGTTCAACTCTAGGTATACCAAAAACATGGTGAGGCTGTGTGTGTGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAACTCTAGGTATACCAAAAACATGGTGAGGCTGTGTGTGTGCATG  600

seq1  CGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTCTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTCTCATG  650

seq1  TGTGCAAGGCTTCCTTGAATTC  672
      ||||||||||||||||||||||
seq2  TGTGCAAGGCTTCCTTGAATTC  672