BAC Information

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BAC

Clone NameB6Ng01-046I04
Chromosome2 (Build37)
Map Location 106,091,446 - 106,092,556
singlet/doubletsinglet
Overlap geneDcdc5
Upstream gene0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765
Downstream gene9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046I04.bB6Ng01-046I04.g
ACCDH871648DH871649
length7251,092
definitionDH871648|Mus musculus domesticus DNA, BAC clone: B6Ng01-046I04, 5' end.DH871649|Mus musculus domesticus DNA, BAC clone: B6Ng01-046I04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttaattatatgtcacaaatcttccatttttttctcccttgacaa
catgagctatcaattacagagagaaatgtgtttaacatctgatggtgatc
tgtccatttttctctacagttttcttgatgtttgttatatatatttgaag
gttattagatatgtaaaatttataattatgtaatttttttatcagactca
tgctttttgtcttaaagtctaatggtcacacaactataccatctttcttt
ttgccaatatttatttggactgtcaagtcagagtctgactagaaaagcag
aaaacactttaaacatctaaacagagggactttaacccaagcaatgagtt
gcacagatgacagatgacctgagaaattcaataggaagtggtttaaagat
tgacaatagtgagggggtgccaccaggagtagggaagggaagcaaaagac
cgggggtgggggtggggcagttcaggatcattgtcatccatacaaactga
agcaataagaaaggaggagccacaggagcaggccatacccttggagctgg
ggatgcctgaaatggatcagagcagcttgaagctgatgggaagttcctct
actatccatcagcctcaagtctcaaaagcaaagttagacagaagccagct
ggcccagggaaggcaccattctgattctgtctttgaagtcactttgattt
tatcagagggaccctccacactgct
gaattctgataaacacaaaagcaaaatgcaaactcctgggactgttattt
tggggacagttatgaaaaccaagggtagtactgagtggtagccatgtctg
gtgctacctacctataatcccagcatttggaaggcagttggatatcaagc
tcaaaaccagcctgggctaaaatctcagagaattctgaattgcataacaa
aaccttgtacagaaaaccaatccagccataccaaactaaattaaaataac
tgtaagggttaagcagtaaatccttacaaggacctttccttatttcttga
tacttttgtgtgaaatgattctgccccgtgctattttaaacaacacacgt
tggtttttttttttttggatctcttgtcttactagccataaggcatttgt
gttgtgattatgtttttaatgttctttttcaagtttaagtcaaaaaagag
gtggggaatacactcttacagaacttgctttctctgctaactgccacaca
gagaaaggtaagtcagggcctagtgacggtgtcttaattaatgccatctc
ttatgaatggtcagaatgtctcatcagtgtgaaatgaggaaaacaagctg
ggatttagcagtacataggaattagtgacaaagagagagcacgatgaata
gtaccctcctctgcagaagacacaagcgttcagtggaagcatattccaga
tggacccctcgccaggtcctctgcaaggtgcaaggaaatataagcttaga
ctcaaagaactatgcattgtgacaggtgaaatcttcagtttttaaagagt
ggagatcctgtaggactgctcaaatgagagctgattgtggtagaaaggaa
ggattgcttgcttcaaaagagctatctccggacttgagtggtagaagctg
gagggtaagagttcaaggctagctcagcagcttgggtggggaataagaac
acaggcacaggaaccaactgaagaagtgctaaacagtctgagcaagaatc
aataagtaaaaatattcatagatggactagcctagtatattgcatgatga
ataatgcaatttcgaatacagacgtagaagagtgacttacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_106091446_106092556
seq2: B6Ng01-046I04.g_68_1159

seq1  GAATTCTGATAAACACAAAAGCAAAATGCAAACTCCTGGGACTGTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATAAACACAAAAGCAAAATGCAAACTCCTGGGACTGTTATTT  50

seq1  TGGGGACAGTTATGAAAACCAAGGGTAGTACTGAGTGGTAGCCATGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACAGTTATGAAAACCAAGGGTAGTACTGAGTGGTAGCCATGTCTG  100

seq1  GTGCTACCTACCTATAATCCCAGCATTTGGAAGGCAGTTGGATATCAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTACCTACCTATAATCCCAGCATTTGGAAGGCAGTTGGATATCAAGC  150

seq1  TCAAAACCAGCCTGGGCTAAAATCTCAGAGAATTCTGAATTGCATAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACCAGCCTGGGCTAAAATCTCAGAGAATTCTGAATTGCATAACAA  200

seq1  AACCTTGTACAGAAAACCAATCCAGCCATACCAAACTAAATTAAAATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGTACAGAAAACCAATCCAGCCATACCAAACTAAATTAAAATAAC  250

seq1  TGTAAGGGTTAAGCAGTAAATCCTTACAAGGACCTTTCCTTATTTCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGGTTAAGCAGTAAATCCTTACAAGGACCTTTCCTTATTTCTTGA  300

seq1  TACTTTTGTGTGAAATGATTCTGCCCCGTGCTATTTTAAACAACACACGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGTGTGAAATGATTCTGCCCCGTGCTATTTTAAACAACACACGT  350

seq1  TGGTTTTTTTTTTTTTGGATCTCTTGTCTTACTAGCCATAAGGCATTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTTTTTTTTTGGATCTCTTGTCTTACTAGCCATAAGGCATTTGT  400

seq1  GTTGTGATTATGTTTTTAATGTTCTTTTTCAAGTTTAAGTCAAAAAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGATTATGTTTTTAATGTTCTTTTTCAAGTTTAAGTCAAAAAAGAG  450

seq1  GTGGGGAATACACTCTTACAGAACTTGCTTTCTCTGCTAACTGCCACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAATACACTCTTACAGAACTTGCTTTCTCTGCTAACTGCCACACA  500

seq1  GAGAAAGGTAAGTCAGGGCCTAGTGACGGTGTCTTAATTAATGCCATCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGTAAGTCAGGGCCTAGTGACGGTGTCTTAATTAATGCCATCTC  550

seq1  TTATGAATGGTCAGAATGTCTCATCAGTGTGAAATGAGGAAAACAAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATGGTCAGAATGTCTCATCAGTGTGAAATGAGGAAAACAAGCTG  600

seq1  GGATTTAGCAGTACATAGGAATTAGTGACAAAGAGAGAGCACGATGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAGCAGTACATAGGAATTAGTGACAAAGAGAGAGCACGATGAATA  650

seq1  GTACCCTCCTCTGCAGAAGACACAAGCGTTCAGTGGAAGCATATTCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCTCCTCTGCAGAAGACACAAGCGTTCAGTGGAAGCATATTCCAGA  700

seq1  TGGACCCCTCGCCAGGTCCTCTGCAAGGTGCAAGGAAATATAAGCTTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCCTCGCCAGGTCCTCTGCAAGGTGCAAGGAAATATAAGCTTAGA  750

seq1  CTCAAAGAACTATGCATTGTGACAGGTGAAATCTTCAGTTTTTAAAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGAACTATGCATTGTGACAGGTGAAATCTTCAGTTTTTAAAGAGT  800

seq1  GGAGATCCTGTAGGACTGCTCAAATGAGAGCTGATTGTGGTAGAAAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCCTGTAGGACTGCTCAAATGAGAGCTGATTGTGGTAGAAAGGAA  850

seq1  GGAATTGCTTGCTTCAAAAAGAGCTATCTCCGGACTTGAGTGGTAGAAGC  900
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GG-ATTGCTTGCTTC-AAAAGAGCTATCTCCGGACTTGAGTGGTAGAAGC  898

seq1  TGGAGGGTAAGGAGTTCAAGGCTAGCCTCAGCCAGCTTGGGTGGGGATAC  950
      |||||||||| |||||||||||||| ||||| |||||||||||||||   
seq2  TGGAGGGTAA-GAGTTCAAGGCTAG-CTCAG-CAGCTTGGGTGGGGAATA  945

seq1  AGAACACAGGGCACAGGAACCAACCTGAAGAAAGTGCTAAAACAGTCTGA  1000
      |||||||| |||||||||||||| |||||| ||||||| |||||||||||
seq2  AGAACACA-GGCACAGGAACCAA-CTGAAG-AAGTGCT-AAACAGTCTGA  991

seq1  GCAAAGAATCAATAAAGTTAATAAATATTCAATAGATTGTACTAGCATAA  1050
      || |||||||||| ||||  | |||||||| ||||| || |||||| | |
seq2  GC-AAGAATCAAT-AAGT--AAAAATATTC-ATAGA-TGGACTAGCCT-A  1034

seq1  GTATA-TGCATGAATGAATAAATGCAAATTTCAGATACAGACGTAGAAGA  1099
      ||||| |||||| |||||| ||||| ||||||  ||||||||||||||||
seq2  GTATATTGCATG-ATGAAT-AATGC-AATTTCGAATACAGACGTAGAAGA  1081

seq1  GGTGACTAACAT  1111
       |||||| ||||
seq2  -GTGACTTACAT  1092