BAC Information

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BAC

Clone NameB6Ng01-047A05
Chromosome2 (Build37)
Map Location 24,194,489 - 24,353,024
singlet/doubletdoublet
Overlap geneIl1rn, Psd4, Pax8, LOC433410
Upstream geneNxph2, LOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1, Hnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10
Downstream geneLOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047A05.bB6Ng01-047A05.g
ACCDH871997DH871998
length1,076971
definitionDH871997|Mus musculus domesticus DNA, BAC clone: B6Ng01-047A05, 5' end.DH871998|Mus musculus domesticus DNA, BAC clone: B6Ng01-047A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,194,489 - 24,195,600)(24,352,045 - 24,353,024)
sequence
gaattcctgcccatctccaaattctcttgccttatgaagttaaccatcag
agaaaagagtcagcatgtacctctgaaaatgtaataactataaaaacaat
gacgttcagaccaatacatatcacccgcacaccatggaattaaaagccat
ctaggaagacttaacctcagaaaggattcagggaaggtttcctatctgga
tctgggaagaaattgagcctcttgaaaagcactgatccacaattgttggt
ttatgccctgtctcctgaatgacctttgctagccatgagagtatacatga
tcaccttgacatcagaaagctagagggctaaaacttaggtagaaagagcc
aggagcacagatgtttccctggggagcttccaacaaggtgtattattaag
atgagctcaaatacctgacatgattaggaaggatcagatggacaaaaaaa
aaaaaaaatcaggctataccctcaggtgttcttttttttccccctacttc
ctctcatactagtatatttatatatgacttggaaggaaaaactttgaccc
actgttttagtaagaattagcaaagttaggataatattgtcacaactgtg
tggttcataccacacagctaagctattagagagttggctagagggctacg
aggtgattttgttacaacttagggtgcatatttattcacccaaggccaaa
tgcatgcatctcacaaatggtgcttagtggcacaagctcagctccaacag
gcaggggtaatgctcacatcagtattcattaaagttttctggaaatatat
attcaaaagctcaagtccagtgaatcaaggacctccacataaaaccagag
acactgaaacttatagaggagaaagtggggaagaaacttgaacatatggg
cacagtggaaatttcctgacagatacatggcttgtgctgtaagatcagaa
tcgacaatgggactcataaaatgccagctctgaaagtcaaagacactgtc
aatagacaaaagcacacagatgggaaaatcttacacctaatcaataaggc
taatcaataataaaagaactcagaag
gaattctagtagtgaggatgtttatgtaggaaatctgggttgaattgtgt
tttccaaaatatttctagtacttgtgactttatttagaaataaagtcttg
acacaaaatcaacaatagaggtgatttatgcacccataaccacaatccat
ataccatgtgaccttgtaagggagaggggagtgtattgtgaaaacacaga
aagagggagatcatttaaagatggaggtggggcctacaactaggctgccg
cagctgaggaacttctggatgcacttgaaggcaggggaaggatcaaagag
ccctgccaatgcctccatttgtactttgagcattcagaactgcgagagaa
taaatttctgacacctttaactacctaagctgtcatatattgttatggca
gccctagcaaatagaagcaataagttcaattctgtaagaagatataatta
attgtaaggggtttttgtttttttgcaggagtacttaagtgtgtattcat
aggttctagagaagggagagtgacttttttggggggatatggtccttggc
aggatgtgcacaccacagtggatggccacatctgtaaacatataggcagc
actgattggcctccacaaattattaaatataaacaaataagagagctcag
gggtatatggtgaggagttgaagtatggagggtgaatatgatcaagataa
attctacatgtaaagattcaatgagtgcattctatatataaaactttaga
acaatacatttcagtacatgtaaggttcaagaatagagacactcaagtat
tcctggtgcagctggggtctgtgttgatgtatgtagcctgagtaacacca
aaggatgtcagaggcccatggtttggtttgccactggaaaacatgtggat
atctgaggcatactgctggtggggaaacatgctgatctgagtgctgtgtt
gcactgaagctgtgacatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_24194489_24195600
seq2: B6Ng01-047A05.b_45_1120

seq1  GAATTCCTGCCCATCTCCAAATTCTCTTGCCTTATGAAGTTAACCATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCCATCTCCAAATTCTCTTGCCTTATGAAGTTAACCATCAG  50

seq1  AGAAAAGAGTCAGCATGTACCTCTGAAAATGTAATAACTATAAAAACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAGTCAGCATGTACCTCTGAAAATGTAATAACTATAAAAACAAT  100

seq1  GACGTTCAGACCAATACATATCACCCGCACACCATGGAATTAAAAGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTTCAGACCAATACATATCACCCGCACACCATGGAATTAAAAGCCAT  150

seq1  CTAGGAAGACTTAACCTCAGAAAGGATTCAGGGAAGGTTTCCTATCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAGACTTAACCTCAGAAAGGATTCAGGGAAGGTTTCCTATCTGGA  200

seq1  TCTGGGAAGAAATTGAGCCTCTTGAAAAGCACTGATCCACAATTGTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAGAAATTGAGCCTCTTGAAAAGCACTGATCCACAATTGTTGGT  250

seq1  TTATGCCCTGTCTCCTGAATGACCTTTGCTAGCCATGAGAGTATACATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCCTGTCTCCTGAATGACCTTTGCTAGCCATGAGAGTATACATGA  300

seq1  TCACCTTGACATCAGAAAGCTAGAGGGCTAAAACTTAGGTAGAAAGAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTGACATCAGAAAGCTAGAGGGCTAAAACTTAGGTAGAAAGAGCC  350

seq1  AGGAGCACAGATGTTTCCCTGGGGAGCTTCCAACAAGGTGTATTATTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCACAGATGTTTCCCTGGGGAGCTTCCAACAAGGTGTATTATTAAG  400

seq1  ATGAGCTCAAATACCTGACATGATTAGGAAGGATCAGATGGACAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTCAAATACCTGACATGATTAGGAAGGATCAGATGGACAAAAAAA  450

seq1  AAAAAAAATCAGGCTATACCCTCAGGTGTTCTTTTTTTTCCCCCTACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCAGGCTATACCCTCAGGTGTTCTTTTTTTTCCCCCTACTTC  500

seq1  CTCTCATACTAGTATATTTATATATGACTTGGAAGGAAAAACTTTGACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATACTAGTATATTTATATATGACTTGGAAGGAAAAACTTTGACCC  550

seq1  ACTGTTTTAGTAAGAATTAGCAAAGTTAGGATAATATTGTCACAACTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTAGTAAGAATTAGCAAAGTTAGGATAATATTGTCACAACTGTG  600

seq1  TGGTTCATACCACACAGCTAAGCTATTAGAGAGTTGGCTAGAGGGCTACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCATACCACACAGCTAAGCTATTAGAGAGTTGGCTAGAGGGCTACG  650

seq1  AGGTGATTTTGTTACAACTTAGGGTGCATATTTATTCACCCAAGGCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATTTTGTTACAACTTAGGGTGCATATTTATTCACCCAAGGCCAAA  700

seq1  TGCATGCATCTCACAAATGGTGCTTAGTGGCACAAGCTCAGCTCCAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCATCTCACAAATGGTGCTTAGTGGCACAAGCTCAGCTCCAACAG  750

seq1  GCAGGGGTAATGCTCACATCAGTATTCATTAAAGTTTTCTGGAAATATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGTAATGCTCACATCAGTATTCATTAAAGTTTTCTGGAAATATAT  800

seq1  ATTCAAAAGCTCAAGTCCAAGTGAATCAAGGACCTCCACATAAAACCAGA  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTCAAAAGCTCAAGTCC-AGTGAATCAAGGACCTCCACATAAAACCAGA  849

seq1  GACACTGAAACTTATAGAGGAGAAAGTGGGGAAGAAACTTGAACATATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGAAACTTATAGAGGAGAAAGTGGGGAAGAAACTTGAACATATGG  899

seq1  GCACAGTGGAAATTTTCCTGAACAGAATACCAATGGCTTGTGCTGTAAGA  950
      |||||||||||| ||||||| |||| ||||  ||||||||||||||||||
seq2  GCACAGTGGAAA-TTTCCTG-ACAG-ATAC--ATGGCTTGTGCTGTAAGA  944

seq1  TCAAGAATCGACAAATGGGACCTCATAAAATTGCCCAGCTTCTGAAAGTC  1000
      || ||||||||| ||||||| ||||||||||   ||||| ||||||||||
seq2  TC-AGAATCGAC-AATGGGA-CTCATAAAAT--GCCAGC-TCTGAAAGTC  988

seq1  AAAGGACACTGTCAATAAGACAAAAAGGCAACCAACAGATTGTGAAAAAA  1050
      ||| |||||||||||| ||||||||  |||    |||||   ||  ||||
seq2  AAA-GACACTGTCAAT-AGACAAAA--GCA---CACAGA---TGGGAAAA  1028

seq1  TCTTTACCAACCCTAAATTCAATATAGGGCTAATATCCAATATATACAAA  1100
      ||||    |  |||||  |||  ||| |||||||   ||||| ||| |||
seq2  TCTT----ACACCTAA--TCA--ATAAGGCTAAT---CAATA-ATA-AAA  1065

seq1  GAACTCAAGAAG  1112
      |||||| |||||
seq2  GAACTC-AGAAG  1076

seq1: chr2_24352045_24353024
seq2: B6Ng01-047A05.g_67_1037 (reverse)

seq1  CAGATGTCACCAGGCCCTCAGGTGGCAACACAAGCCACTCAGATCAGCAT  50
      ||||||||| |||  | ||||   ||||||||   |||||||||||||||
seq2  CAGATGTCA-CAG--CTTCAG--TGCAACACA--GCACTCAGATCAGCAT  43

seq1  GTCTCCCCACCAGCAGTATGGCCCTCAGATATCCACATGGTCTCCAGTGG  100
      || |||||||||||||||||  ||||||||||||||||| | ||||||||
seq2  GTTTCCCCACCAGCAGTATG--CCTCAGATATCCACATGTTTTCCAGTGG  91

seq1  C-AACCAAACCATGGGCCTCTGACATCCTTTGGTGGTAACTCAGGCTACA  149
      | |||||||||||||||||||||||||||||||| || ||||||||||||
seq2  CAAACCAAACCATGGGCCTCTGACATCCTTTGGT-GTTACTCAGGCTACA  140

seq1  TACATCAACACAGACCCCAGCTGCACCAGGAATACTTGAGTGTCTCTATT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCAACACAGACCCCAGCTGCACCAGGAATACTTGAGTGTCTCTATT  190

seq1  CTTTGAACCTTACATGTACTG-AATGTATTGTTCTAAAGTTTTATATATA  248
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  C-TTGAACCTTACATGTACTGAAATGTATTGTTCTAAAGTTTTATATATA  239

seq1  GAATGCACTCATTGAATCTTTACATGTAGAATTTATCTTGATCATATTCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCACTCATTGAATCTTTACATGTAGAATTTATCTTGATCATATTCA  289

seq1  CCCTCCATACTTCAACTCCTCACCATATACCCCTGAGCTCTCTTATTTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCATACTTCAACTCCTCACCATATACCCCTGAGCTCTCTTATTTGT  339

seq1  TTATATTTAATAATTTGTGGAGGCCAATCAGTGCTGCCTATATGTTTACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTAATAATTTGTGGAGGCCAATCAGTGCTGCCTATATGTTTACA  389

seq1  GATGTGGCCATCCACTGTGGTGTGCACATCCTGCCAAGGACCATATCCCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGCCATCCACTGTGGTGTGCACATCCTGCCAAGGACCATATCCCC  439

seq1  CCAAAAAAGTCACTCTCCCTTCTCTAGAACCTATGAATACACACTTAAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAGTCACTCTCCCTTCTCTAGAACCTATGAATACACACTTAAGT  489

seq1  ACTCCTGCAAAAAAACAAAAACCCCTTACAATTAATTATATCTTCTTACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGCAAAAAAACAAAAACCCCTTACAATTAATTATATCTTCTTACA  539

seq1  GAATTGAACTTATTGCTTCTATTTGCTAGGGCTGCCATAACAATATATGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAACTTATTGCTTCTATTTGCTAGGGCTGCCATAACAATATATGA  589

seq1  CAGCTTAGGTAGTTAAAGGTGTCAGAAATTTATTCTCTCGCAGTTCTGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAGGTAGTTAAAGGTGTCAGAAATTTATTCTCTCGCAGTTCTGAA  639

seq1  TGCTCAAAGTACAAATGGAGGCATTGGCAGGGCTCTTTGATCCTTCCCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAAGTACAAATGGAGGCATTGGCAGGGCTCTTTGATCCTTCCCCT  689

seq1  GCCTTCAAGTGCATCCAGAAGTTCCTCAGCTGCGGCAGCCTAGTTGTAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAAGTGCATCCAGAAGTTCCTCAGCTGCGGCAGCCTAGTTGTAGG  739

seq1  CCCCACCTCCATCTTTAAATGATCTCCCTCTTTCTGTGTTTTCACAATAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCTCCATCTTTAAATGATCTCCCTCTTTCTGTGTTTTCACAATAC  789

seq1  ACTCCCCTCTCCCTTACAAGGTCACATGGTATATGGATTGTGGTTATGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCTCTCCCTTACAAGGTCACATGGTATATGGATTGTGGTTATGGG  839

seq1  TGCATAAATCACCTCTATTGTTGATTTTGTGTCAAGACTTTATTTCTAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAATCACCTCTATTGTTGATTTTGTGTCAAGACTTTATTTCTAAA  889

seq1  TAAAGTCACAAGTACTAGAAATATTTTGGAAAACACAATTCAACCCAGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCACAAGTACTAGAAATATTTTGGAAAACACAATTCAACCCAGAT  939

seq1  TTCCTACATAAACATCCTCACTACTAGAATTC  980
      ||||||||||||||||||||||||||||||||
seq2  TTCCTACATAAACATCCTCACTACTAGAATTC  971