BAC Information

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BAC

Clone NameB6Ng01-047B05
Chromosome2 (Build37)
Map Location 20,544,562 - 20,545,610
singlet/doubletsinglet
Overlap geneEtl4
Upstream geneLOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609
Downstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047B05.bB6Ng01-047B05.g
ACCDH872036DH872037
length1,1831,033
definitionDH872036|Mus musculus domesticus DNA, BAC clone: B6Ng01-047B05, 5' end.DH872037|Mus musculus domesticus DNA, BAC clone: B6Ng01-047B05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctttgtaccccattttaaatggggttatttgaatt
tctggagtccagcttcttgagctctttgtagatattggatattagatccc
tatcagatttaggattggtaaaaatcctttcccactctgttggtggcctt
tatgtcttattgacagtattttttgtcttacagaaggtttgcaattttat
gaggtcccatttgttgattcttgatcttataacacaagccattgctgttc
tgttcaggaatctttcccctgtgcccatatctttgaggctattccccact
ttctcctctataaatttcagtatctctggttttatggggagttctttgat
ccacttagactttagctttgtacaaggagaaaaaatggatcaattcacag
tcttatacatgataaccgccagttgtgccagcaccatttgttgaaaattc
tggctttttttccactggatggttctagctcccttggcaaagattaggag
accataggtgtgtgggttaatttctggatcttcaattctagtccattgat
ctacctgtctatcattgtaccagtaccatgcaggttttatcacaattcct
ctgtagtacagcttgaggtaggcatggtgattccactagacgttctttta
ttgttgagaagagtttttgttatcctaggttttttattattccagatgaa
tttgcaaattgcccttgctaactcagtgaagaattgagttggaattttga
tggggattgcattgaatctgtagaatgctttcagcaagataggcattttg
atatattgatcctgccaatccatgagcatgggagatctttctatctttct
gagatcttcttcattttctttctcagagacttgaagttcttatcatacag
atctttcacttctttggttagggtcacaccaagatattttatattatttg
tgattattttgaaggtgatgtatccctaattttttctcatcctgttatcc
ttgtgtagagacgcactgatttgtttgagttattttaatccagctactgc
actgagctgtttatcaggtttgaagtttcctggtgaatttttgggtccct
ataatactatcgattatccgcaaaatggaatgactcttctcttccaatgg
gatccctaactcattttgtgagccatggtcttg
gaattcataggtgtggtctatgtaatactaggcagggacttaaaaagccc
attttaaagtctattttcccctttcagaggacatggcagtaagtcaccag
gcagatagtttgcaaggttttagaaaaaaactttagacaaagcaaaggga
ccccttccagggactttttttttttaagatttatttatttattatatgta
agtacaccatagctgtcttcagacaccccagaagagggcatcagatctca
ttacagatggttgtgagccaccatgtggttgctgggatttgaacttggga
ccttcagaagagcagtcagtgctcttaactgctgaaccatctctccaacc
cagtaatttcagcagtgtttttttgttttgtttgtttgtttgttttgttt
tgttttgtttttatagcatttctctgtatagccctggctgtcctgaaact
cactttgtagaccagactagcctcaaactcagaaatttgcctgcctttgc
ctcccaagtgctgggattaaaggtgtgcaccaccactgcctggatcttcc
agggacttctgatgtaatctctcatttatgggaggctgttgagtgggctt
catgaacatgtgatcaagctgtaaagctggacagtatagggatcctggtg
tcttcttgtgccttatagaatcaaatacccttggggtttctatttccagt
gctccccaggaagcactggacctcttgcatgttcagtagatagatgctca
tggttcatgcgtagaacaccctccccaataggaacattttaaaggagaaa
acaaaagcagcagccaagatgctgtcttatcccaattcaatattagaaat
tcagacttggtgagtatgttattgtgaaataaattagtgtttccgggctc
tccggagctcgagtcagcagtattcacagttgaactgataaagtggctct
aagtgttttaagggaagtcatcatgcagagattgtatgaaaaagacatgt
gatctaacagtacaaatgtacctaatgaaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_20544562_20545610
seq2: B6Ng01-047B05.g_69_1101

seq1  GAATTCATAGGTGTGGTCTATGTAATACTAGGCAGGGACTTAAAAAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGTGTGGTCTATGTAATACTAGGCAGGGACTTAAAAAGCCC  50

seq1  ATTTTAAAGTCTATTTTCCCCTTTCAGAGGACATGGCAGTAAGTCACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGTCTATTTTCCCCTTTCAGAGGACATGGCAGTAAGTCACCAG  100

seq1  GCAGATAGTTTGCAAGGTTTTAGAAAAAAACTTTAGACAAAGCAAAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAGTTTGCAAGGTTTTAGAAAAAAACTTTAGACAAAGCAAAGGGA  150

seq1  CCCCTTCCAGGGACTTTTTTTTTTTAAGATTTATTTATTTATTATATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCAGGGACTTTTTTTTTTTAAGATTTATTTATTTATTATATGTA  200

seq1  AGTACACCATAGCTGTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACCATAGCTGTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCA  250

seq1  TTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTGGGA  300

seq1  CCTTCAGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAACC  350

seq1  CAGTAATTTCAGCAGTGTTTTTTTGTTTTGTTTGTTTGTTTGTTTTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATTTCAGCAGTGTTTTTTTGTTTTGTTTGTTTGTTTGTTTTGTTT  400

seq1  TGTTTTGTTTTTATAGCATTTCTCTGTATAGCCCTGGCTGTCCTGAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTTATAGCATTTCTCTGTATAGCCCTGGCTGTCCTGAAACT  450

seq1  CACTTTGTAGACCAGACTAGCCTCAAACTCAGAAATTTGCCTGCCTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTAGACCAGACTAGCCTCAAACTCAGAAATTTGCCTGCCTTTGC  500

seq1  CTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACTGCCTGGATCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACTGCCTGGATCTTCC  550

seq1  AGGGACTTCTGATGTAATCTCTCATTTATGGGAGGCTGTTGAGTGGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTTCTGATGTAATCTCTCATTTATGGGAGGCTGTTGAGTGGGCTT  600

seq1  CATGAACATGTGATCAAGCTGTAAAGCTGGACAGTATAGGGATCCTGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACATGTGATCAAGCTGTAAAGCTGGACAGTATAGGGATCCTGGTG  650

seq1  TCTTCTTGTGCCTTATAGAATCAAATACCCTTGGGGTTTCTATTTCCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGTGCCTTATAGAATCAAATACCCTTGGGGTTTCTATTTCCAGT  700

seq1  GCTCCCCAGGAAGCACTGGACCTCTTGCATGTTCAGTAGATAGATGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCAGGAAGCACTGGACCTCTTGCATGTTCAGTAGATAGATGCTCA  750

seq1  TGGTTCATGCGTAGAACACCCTCCCCAATAGGAACATTTTAAAGGAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCATGCGTAGAACACCCTCCCCAATAGGAACATTTTAAAGGAGAAA  800

seq1  ACAAAAGCAGCAGCCAAGATGCTGTCTTATCCCAAATTCAATATTAGAAA  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACAAAAGCAGCAGCCAAGATGCTGTCTTATCCC-AATTCAATATTAGAAA  849

seq1  TTCAGGACTTGGGTGAGTATGTTATTGTGAAATAAATTAGTGTTTCCGGG  900
      |||| ||||| |||||||||||||||||||||||||||||||||||| ||
seq2  TTCA-GACTT-GGTGAGTATGTTATTGTGAAATAAATTAGTGTTTCC-GG  896

seq1  GCTCTCCGGAGGCTCCGAGTCAGCAGTATTCACCAGTTGAACTGATAAAA  950
      |||||||||| ||| ||||||||||||||||| ||||||||||||| |||
seq2  GCTCTCCGGA-GCT-CGAGTCAGCAGTATTCA-CAGTTGAACTGAT-AAA  942

seq1  GTGGCTCTTAGGTGTTTTTAAGGGGAAGTCATCAATGCAGAGATTGGATA  1000
      ||||||| || |||||||  | ||||||||||| |||||||||||| || 
seq2  GTGGCTC-TAAGTGTTTT--AAGGGAAGTCATC-ATGCAGAGATTGTAT-  987

seq1  GAAAAAGACATGTGATCTAACAGTACAAAATGGTACCTTAATGAAATTC  1049
      |||||||||||||||||||||||||||||   ||||| |||||||||||
seq2  GAAAAAGACATGTGATCTAACAGTACAAA--TGTACC-TAATGAAATTC  1033