BAC Information

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BAC

Clone NameB6Ng01-047D07
Chromosome2 (Build37)18 (Build37)
Map Location 142,776,314 - 142,776,64067,860,041 - 67,861,162
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047D07.bB6Ng01-047D07.g
ACCDH872132DH872133
length9121,085
definitionDH872132|Mus musculus domesticus DNA, BAC clone: B6Ng01-047D07, 5' end.DH872133|Mus musculus domesticus DNA, BAC clone: B6Ng01-047D07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,314 - 142,776,640)(67,860,041 - 67,861,162)
sequence
gaattcagccaatcacagacaggaagcgtttacaaagactcctgaatcag
gctggagagatggctcacctggttaagaggactgactgctcttcctaaag
tcctgaattcaattcccagcaaccacatggtggctcacagccgtcggtaa
agggattcaataccctcttctggtgtgtctctaaacatctactatatcta
tgaggtatatattgatatagatataaaatcttttttaaaaaaaagctcct
gtattcttgttaaactcccctagaggtttttttccccttcttatccccac
tttcacctctaataattatttacacgacggttatatcataagctgcatca
ctttaaaccaattgaccatttaaagcagacaggaggaggggaatatattc
atagaatgataaccaccatttggggttttggtgcctgttgaaatgctgat
ggggaacctttgaaccaatcccttgctggtatctacgaaagactgaggta
atgtgtgtggtgccctttcaggatcttctaatctattacactgactcact
atgccgtctcaattctcgtaccatgctctctctctcacactcgctctgtc
tcaaagctccggtcagacatggtgattccaccagaggttcttttatcctt
gagaagagtttttgctatcctaggttttttgttattccagatgaatttgc
agattgctctttctaattcgtgaagaattgagttggaattttgatgggga
ttgcattgaatctgtagatgcttttggcaagatagccatttatacatgtt
gatcctgccaatccatgagatgggagatcttccatcttctgagatctttc
ttaatttctttcttcagagatttgagtttttatcatacggattctttcac
ttcttagttaga
gaattccagtaaggtgtgaattggaccaatatctttccatggttttttaa
tttaatagcccgttgaagttggtcctgggtagcataatccaggcgaggtg
ggagtcagtgaggaacataatggttctgattaccaagagcttcatcttaa
aaggcaaatcataatgagttcagggcctgagggaatgttccttccttgct
aagtgactgagaatcttgtcctacggtagcattttgagcaggcccgtgta
gaagccgcagttcattgtctggaagctctgctggagaacgtgtactggat
ggtgcagccacagtgcacgtggagagaactctgagtggggatgcatgggg
tgccctccagaactacctgtatttagaacttgggggaagatgaatgaagc
agaagtttcaaactactaaaatcttttagataaaataggaatgtcagaga
atttgtagttgtcattggaatgtttaaggctgagtctttctgagtagtca
agccgctccatctgtcgtttccttcatatgctgttttcttttgcaacact
ctgcttaacatggggtgtgattgcaagtatgtggcctctaagagaggaac
ctagtattacattgaacctagtattaaattaattggacatgattttgttt
aatacaaacacatagactgcaacaattgtgggtttaagacagagtctcac
attggttaggagttgctgaggctgggatgattttgaacttgtggtatttt
tgctgggatgacaggcctatctgttaccatcctggttaggagggactagg
aattaaagctctggtgttctacgccagcactctatcttttgagctacatc
ctaagcactaggactctagctcagataatggaattgccttatttataggc
ctagtgaggtcaagtcctctagtcatacatgaataggtgctaatgatgac
atgactatggaactctatctagactctatctctctagtctgatcaccagt
gtgatgcgatgtcagtagtctgtagctgggaactgttcggtgattgaatc
ttcagtagtgccgcaaattgaaagaatgatgactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776314_142776640
seq2: B6Ng01-047D07.b_634_953 (reverse)

seq1  TCTAACTAAGGAAGTGAAAG-ATCTGTATGATAAAAACTTCAAGTCTCTG  49
      ||||||||| |||||||||| ||| ||||||||||||| |||| ||||||
seq2  TCTAACTAA-GAAGTGAAAGAATCCGTATGATAAAAAC-TCAAATCTCTG  48

seq1  AAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAGGATCTCCCATGCTC  99
      ||||||||||||||  ||||||||||||||||||| |||||||||| |||
seq2  AAGAAAGAAATTAAGAAAGATCTCAGAAGATGGAA-GATCTCCCAT-CTC  96

seq1  ATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAA  149
      |||||||||||||||||||| |||| |||||||||||||||||||||| |
seq2  ATGGATTGGCAGGATCAACA-TGTATAAATGGCTATCTTGCCAAAAGC-A  144

seq1  TCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTC-AC  193

seq1  GAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAG  249
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  GAATTAGAAAGAGCAATCTGCAAATTCATCTGGAATAACAAAAAACCTAG  243

seq1  GATAGCAAAAAGTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCA  299
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCA  293

seq1  TGCCTGACCTAAAGCTTTACTACAGAGC  327
      || ||||||   ||||||   |||||||
seq2  TGTCTGACC-GGAGCTTTGAGACAGAGC  320

seq1: chr18_67860041_67861162
seq2: B6Ng01-047D07.g_66_1150 (reverse)

seq1  AAGTCATCATTCTTTTCAGACTAGAGGGACTTAAACTGAAGGATTTCAAT  50
      |||||||||||| ||||| | | | || |||   |||||||   ||||||
seq2  AAGTCATCATTC-TTTCA-ATTTGCGGCACT---ACTGAAG--ATTCAAT  43

seq1  CACACAGAACAGTTCACAGCTACAGACTACTGAACAACCCCAATCACACT  100
        ||| ||||||||| |||||||||||||||| ||| | |  ||||||||
seq2  --CACCGAACAGTTCCCAGCTACAGACTACTG-ACATCGC--ATCACACT  88

seq1  GTGTGATCAGACTTAGAAGAGGAATAAGGAAGTTCTAGATAAGAGTTTCC  150
      | |||||||||||    ||||  |||  |    ||||||| |||| ||||
seq2  G-GTGATCAGACT----AGAGAGATAGAG----TCTAGAT-AGAG-TTCC  127

seq1  ATAAGGTCATGTTCAATCATTAGCACCCTAATTCCATGTATTGACTAAGG  200
      |||  |||||||   |||||||||| ||||  | |||||| ||||||  |
seq2  ATA--GTCATGT--CATCATTAGCA-CCTA--TTCATGTA-TGACTA--G  167

seq1  AGGACTTTGACCTCACTAGGGCCTATAAATAAGGCAATTCCATTATTCTG  250
      ||||| |||||||||||| |||||||||||||||||||||||||| ||||
seq2  AGGAC-TTGACCTCACTA-GGCCTATAAATAAGGCAATTCCATTA-TCTG  214

seq1  AGCTAGAGTCCTAGTGCTTAGGATGTAGCTCAAAAGATAGAGTGCTGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGCTAGAGTCCTAGTGCTTAGGATGTAGCTCAAAAGATAGAGTGCTGGCG  264

seq1  TAGAACACCAGAGCTTTAACTTCCTAGTCCCTCCTAACCAGGATGGTAAC  350
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAGAACACCAGAGCTTTAA-TTCCTAGTCCCTCCTAACCAGGATGGTAAC  313

seq1  AGATAGGCCTGTCATCCCAGCAAAAATACCACAAGTTCAAAATCATCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGCCTGTCATCCCAGCAAAAATACCACAAGTTCAAAATCATCCCA  363

seq1  GCCTCAGCAACTCCTAACCAATGTGAGACTCTGTCTTAAACCCACAATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCAACTCCTAACCAATGTGAGACTCTGTCTTAAACCCACAATTG  413

seq1  TTGCAGTCTATGTGTTTGTATTAAACAAAATCATGTCCAATTAATTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTCTATGTGTTTGTATTAAACAAAATCATGTCCAATTAATTTAAT  463

seq1  ACTAGGTTCAATGTAATACTAGGTTCCTCTCTTAGAGGCCACATACTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTTCAATGTAATACTAGGTTCCTCTCTTAGAGGCCACATACTTGC  513

seq1  AATCACACCCCATGTTAAGCAGAGTGTTGCAAAAGAAAACAGCATATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACACCCCATGTTAAGCAGAGTGTTGCAAAAGAAAACAGCATATGAA  563

seq1  GGAAACGACAGATGGAGCGGCTTGACTACTCAGAAAGACTCAGCCTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACGACAGATGGAGCGGCTTGACTACTCAGAAAGACTCAGCCTTAAA  613

seq1  CATTCCAATGACAACTACAAATTCTCTGACATTCCTATTTTATCTAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAATGACAACTACAAATTCTCTGACATTCCTATTTTATCTAAAAG  663

seq1  ATTTTAGTAGTTTGAAACTTCTGCTTCATTCATCTTCCCCCAAGTTCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTAGTTTGAAACTTCTGCTTCATTCATCTTCCCCCAAGTTCTAA  713

seq1  ATACAGGTAGTTCTGGAGGGCACCCCATGCATCCCCACTCAGAGTTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGTAGTTCTGGAGGGCACCCCATGCATCCCCACTCAGAGTTCTCT  763

seq1  CCACGTGCACTGTGGCTGCACCATCCAGTACACGTTCTCCAGCAGAGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGCACTGTGGCTGCACCATCCAGTACACGTTCTCCAGCAGAGCTT  813

seq1  CCAGACAATGAACTGCGGCTTCTACACGGGCCTGCTCAAAATGCTACCGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAATGAACTGCGGCTTCTACACGGGCCTGCTCAAAATGCTACCGT  863

seq1  AGGACAAGATTCTCAGTCACTTAGCAAGGAAGGAACATTCCCTCAGGCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAGATTCTCAGTCACTTAGCAAGGAAGGAACATTCCCTCAGGCCC  913

seq1  TGAACTCATTATGATTTGCCTTTTAAGATGAAGCTCTTGGTAATCAGAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCATTATGATTTGCCTTTTAAGATGAAGCTCTTGGTAATCAGAAC  963

seq1  CATTATGTTCCTCACTGACTCCCACCTCGCCTGGATTATGCTACCCAGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGTTCCTCACTGACTCCCACCTCGCCTGGATTATGCTACCCAGGA  1013

seq1  CCAACTTCAACGGGCTATTAAATTAAAAAACCATGGAAAGATATTGGTCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTCAACGGGCTATTAAATTAAAAAACCATGGAAAGATATTGGTCC  1063

seq1  AATTCACACCTTACTGGAATTC  1122
      ||||||||||||||||||||||
seq2  AATTCACACCTTACTGGAATTC  1085