BAC Information

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BAC

Clone NameB6Ng01-047J24
Chromosome2 (Build37)
Map Location 34,254,158 - 34,375,399
singlet/doubletdoublet
Overlap geneLOC665948, Mapkap1
Upstream geneZbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931, Pbx3
Downstream geneLOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047J24.bB6Ng01-047J24.g
ACCDH872437DH872438
length1,069948
definitionDH872437|Mus musculus domesticus DNA, BAC clone: B6Ng01-047J24, 5' end.DH872438|Mus musculus domesticus DNA, BAC clone: B6Ng01-047J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,254,158 - 34,255,255)(34,374,442 - 34,375,399)
sequence
gaattcatgggttgatcagatggttcaacagttaaggcgttagttgccaa
acctaaagatgggagttttacccttgaaattctcgtggtggaaggagaga
agcagctcccacaagctgccctctgatgtcatcatggacatcgtggcata
tgtgtgtatacatacaaaataagtgcaacgaaacactaaaataaaacatt
tggattctctaatctacacatcagctcttggctgacttcaaggccatcag
ttattgattgtctggaaatctcccagcattcttaaaattatttgtaactt
cagagaaagatagctacttgtttctgaccctttgaatatacatttaaaaa
aagatattagcatcaggtaggaggcatgccacagtgcctgtatgggagtc
aaaggccagctttgtgttgtacactctctccttctccacctggatgtggt
ttcaagcatcgaagtcaagtcttgcaggccttaccaagtgcctttgcccg
ttgagcagtcacactggcctccgttccagatattttaaatatttcaagaa
gctatcctctgaaattgtattctagaaactttactccagagcaattataa
ccctgcagcacatttaacttactaatatttattgaaatatttttagctgc
aaaaacattttatgtgcactgttatttattaatgccctgttttaaaatat
tacacgtaaaatttattccagtgcacattagtaaataaattatgcttgta
atttctaatgcatttttaattataaatttatccatgtctacctttattta
tgatatcggtgtctcagtgttgaacatactgtatattaatggagacactg
ttattatgcattcttggagtgctttcgacaaatatccatttttttacgtc
tagtactgtagcatctatagtagagtcagtactcactcatactacctcga
atcagaaagtgctttaagagtagagctagttacgagcagattttgagggc
tgcataaatgtaaatgtagctgctggagaggtatgtaacctaatctgatg
ttcattgtcatcaatccaa
gaattctcacacatcgcatgctgcacaatccaatcttcctaagtctcaga
caaaggagtctgtctgaaagggacaggaggagctccttcagcgcaatctc
tcatgaggactacgagagtttgctggtttcaaacagcagggggtgccaaa
gggatcactattaatcccaggagatagccaggagagggagattagaggtg
taggttagcctcacttaggttaggctcacccgcagctgcacgggtcccac
ctgcaggccttagcattcctcaatggaaagtggaagcaacaattcagagc
tgaatgagctgctgctgcagatgatgcgcagacatcttagcaacaccact
gtctgctacaaatagtgcagactcctgaggcagcaatacttagactcatt
gctgctctgaatcaacaggctttaagagcgatggttggaacccctcttgg
gtcttgttaggcaatctattaataaaggtagatataacattacatataga
gttatttaatgatctgttgattttcaatataagagagtctttttatattc
caatgaattttattttatgtacgtacacatacttttctgagaatgatgtt
ttaaggctttcccagattgacagaagcacagagcaggcagagtctaatgg
aaggcaacagaggaaaaacaaagagagtctgaaccagttgggagagaaaa
gtattttaagtcacaatagaaaaatggccacaatatgcattttcatttag
gctggtgtccttgattagaaaggggcaaacccagatacttctttcccagg
ctcctagtcacactgctcacagaggtgacatctgtagacatgctgttccc
agatctatcacaggctgcacatgtctgcacatgtctagtacagagcacaa
acagcatgcacatgtcccaaatgttctgcagtacaagtgagcagatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_34254158_34255255
seq2: B6Ng01-047J24.b_46_1114

seq1  GAATTCATGGGTTGATCAGATGGTTCAACAGTTAAGGCGTTAGTTGCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGTTGATCAGATGGTTCAACAGTTAAGGCGTTAGTTGCCAA  50

seq1  ACCTAAAGATGGGAGTTTTACCCTTGAAATTCTCGTGGTGGAAGGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAGATGGGAGTTTTACCCTTGAAATTCTCGTGGTGGAAGGAGAGA  100

seq1  AGCAGCTCCCACAAGCTGCCCTCTGATGTCATCATGGACATCGTGGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTCCCACAAGCTGCCCTCTGATGTCATCATGGACATCGTGGCATA  150

seq1  TGTGTGTATACATACAAAATAAGTGCAACGAAACACTAAAATAAAACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATACATACAAAATAAGTGCAACGAAACACTAAAATAAAACATT  200

seq1  TGGATTCTCTAATCTACACATCAGCTCTTGGCTGACTTCAAGGCCATCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCTCTAATCTACACATCAGCTCTTGGCTGACTTCAAGGCCATCAG  250

seq1  TTATTGATTGTCTGGAAATCTCCCAGCATTCTTAAAATTATTTGTAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGATTGTCTGGAAATCTCCCAGCATTCTTAAAATTATTTGTAACTT  300

seq1  CAGAGAAAGATAGCTACTTGTTTCTGACCCTTTGAATATACATTTAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAGATAGCTACTTGTTTCTGACCCTTTGAATATACATTTAAAAA  350

seq1  AAGATATTAGCATCAGGTAGGAGGCATGCCACAGTGCCTGTATGGGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTAGCATCAGGTAGGAGGCATGCCACAGTGCCTGTATGGGAGTC  400

seq1  AAAGGCCAGCTTTGTGTTGTACACTCTCTCCTTCTCCACCTGGATGTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCAGCTTTGTGTTGTACACTCTCTCCTTCTCCACCTGGATGTGGT  450

seq1  TTCAAGCATCGAAGTCAAGTCTTGCAGGCCTTACCAAGTGCCTTTGCCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCATCGAAGTCAAGTCTTGCAGGCCTTACCAAGTGCCTTTGCCCG  500

seq1  TTGAGCAGTCACACTGGCCTCCGTTCCAGATATTTTAAATATTTCAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCAGTCACACTGGCCTCCGTTCCAGATATTTTAAATATTTCAAGAA  550

seq1  GCTATCCTCTGAAATTGTATTCTAGAAACTTTACTCCAGAGCAATTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCTCTGAAATTGTATTCTAGAAACTTTACTCCAGAGCAATTATAA  600

seq1  CCCTGCAGCACATTTAACTTACTAATATTTATTGAAATATTTTTAGCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAGCACATTTAACTTACTAATATTTATTGAAATATTTTTAGCTGC  650

seq1  AAAAACATTTTATGTGCACTGTTATTTATTAATGCCCTGTTTTAAAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATTTTATGTGCACTGTTATTTATTAATGCCCTGTTTTAAAATAT  700

seq1  TACACGTAAAATTTATTCCAGTGCACATTAGTAAATAAATTATGCTTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGTAAAATTTATTCCAGTGCACATTAGTAAATAAATTATGCTTGTA  750

seq1  ATTTCTAATGCATTTTTAATTATAAATTTATCCATGTCTACCTTTATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAATGCATTTTTAATTATAAATTTATCCATGTCTACCTTTATTTA  800

seq1  TGATATCGGTGTCTCAGTGTTGAACATACTGTATATTAATGGAGACACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCGGTGTCTCAGTGTTGAACATACTGTATATTAATGGAGACACTG  850

seq1  TTAATTATGCATTCTTGGAAGTTGCTTTCGACAAAATATCCATTTTTTTT  900
      || ||||||||||||||||   |||||||||| |||||||||||||||| 
seq2  TT-ATTATGCATTCTTGGA--GTGCTTTCGAC-AAATATCCATTTTTTT-  895

seq1  AACGTTCTAAGTACTGTTAGCATCTATTAAGTTAGGAGTCAGTACTCACT  950
       ||| ||| ||||||| ||||||||||  |||   |||||||||||||||
seq2  -ACG-TCT-AGTACTG-TAGCATCTAT--AGT--AGAGTCAGTACTCACT  937

seq1  CATAACTAACCTCCGAAATCAGAAAAGTGCTTTTAAGAGTTAAGAGCTAG  1000
      ||| ||| |||||   |||||| ||||||| |||||||||  ||||||||
seq2  CAT-ACT-ACCTC--GAATCAG-AAAGTGC-TTTAAGAGT--AGAGCTAG  979

seq1  TTACGAGGCCAGATTTTGGAAGGGGCTGCATTTATATGTAAATGTAGCTG  1050
      |||||||  |||||||||    ||||||||  || |||||||||||||| 
seq2  TTACGAG--CAGATTTTG---AGGGCTGCA--TAAATGTAAATGTAGCT-  1021

seq1  GCTGGAGAGGTACTGTAACACTAATCTGATGTCCCATTGTCAT---TCCA  1097
      |||||||||||| |||||| ||||||||||||  |||||||||   ||||
seq2  GCTGGAGAGGTA-TGTAAC-CTAATCTGATGT-TCATTGTCATCAATCCA  1068

seq1  A  1098
      |
seq2  A  1069

seq1: chr2_34374442_34375399
seq2: B6Ng01-047J24.g_67_1014 (reverse)

seq1  ACATCTGCTCACCTGGTTACTTGCAGAACAATTTGGGAACATGTGCATTG  50
      |||||||||||| ||  ||| |||||||| ||||||| ||||||||| ||
seq2  ACATCTGCTCACTTG--TAC-TGCAGAAC-ATTTGGG-ACATGTGCA-TG  44

seq1  CTGTTTTGTGCTTCTGTACCTAGGACATGTGCAGGACATGTGCAGCCTGT  100
      ||| ||||||| |||||| ||| |||||||||| ||||||||||||||||
seq2  CTG-TTTGTGC-TCTGTA-CTA-GACATGTGCA-GACATGTGCAGCCTGT  89

seq1  GATAGATCTGGGAACAGCATGTCTACAGATGTCACCTCTGTGAGCAGTGG  150
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GATAGATCTGGGAACAGCATGTCTACAGATGTCACCTCTGTGAGCAGT-G  138

seq1  TGACTAGGAGCCTGGG-AAGGAGTATCTGGGTTTGCCCCTTTCTAATCAA  199
      |||||||||||||||| ||| |||||||||||||||||||||||||||||
seq2  TGACTAGGAGCCTGGGAAAGAAGTATCTGGGTTTGCCCCTTTCTAATCAA  188

seq1  GGACACCAGCCTAAATGAAAATGCATATTGTGGCCATTTTTCTATTGTGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCAGCCTAAATGAAAATGCATATTGTGGCCATTTTTCTATTGTGA  238

seq1  CTTAAAATACTTTTCTCT-CCAACTGGTTCAGACTCTCTTTGTTTTTCCT  298
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTAAAATACTTTTCTCTCCCAACTGGTTCAGACTCTCTTTGTTTTTCCT  288

seq1  CTGTTGCCTTCCATTAGACTCTGCCTGCTCTGTGCTTCTGTCAATCTGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCCTTCCATTAGACTCTGCCTGCTCTGTGCTTCTGTCAATCTGGG  338

seq1  AAAGCCTTAAAACATCATTCTCAGAAAAGTATGTGTACGTACATAAAATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTTAAAACATCATTCTCAGAAAAGTATGTGTACGTACATAAAATA  388

seq1  AAATTCATTGGAATATAAAAAGACTCTCTTATATTGAAAATCAACAGATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATTGGAATATAAAAAGACTCTCTTATATTGAAAATCAACAGATC  438

seq1  ATTAAATAACTCTATATGTAATGTTATATCTACCTTTATTAATAGATTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAACTCTATATGTAATGTTATATCTACCTTTATTAATAGATTGC  488

seq1  CTAACAAGACCCAAGAGGGGTTCCAACCATCGCTCTTAAAGCCTGTTGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAAGACCCAAGAGGGGTTCCAACCATCGCTCTTAAAGCCTGTTGAT  538

seq1  TCAGAGCAGCAATGAGTCTAAGTATTGCTGCCTCAGGAGTCTGCACTATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCAGCAATGAGTCTAAGTATTGCTGCCTCAGGAGTCTGCACTATT  588

seq1  TGTAGCAGACAGTGGTGTTGCTAAGATGTCTGCGCATCATCTGCAGCAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAGACAGTGGTGTTGCTAAGATGTCTGCGCATCATCTGCAGCAGC  638

seq1  AGCTCATTCAGCTCTGAATTGTTGCTTCCACTTTCCATTGAGGAATGCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATTCAGCTCTGAATTGTTGCTTCCACTTTCCATTGAGGAATGCTA  688

seq1  AGGCCTGCAGGTGGGACCCGTGCAGCTGCGGGTGAGCCTAACCTAAGTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGCAGGTGGGACCCGTGCAGCTGCGGGTGAGCCTAACCTAAGTGA  738

seq1  GGCTAACCTACACCTCTAATCTCCCTCTCCTGGCTATCTCCTGGGATTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACCTACACCTCTAATCTCCCTCTCCTGGCTATCTCCTGGGATTAA  788

seq1  TAGTGATCCCTTTGGCACCCCCTGCTGTTTGAAACCAGCAAACTCTCGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATCCCTTTGGCACCCCCTGCTGTTTGAAACCAGCAAACTCTCGTA  838

seq1  GTCCTCATGAGAGATTGCGCTGAAGGAGCTCCTCCTGTCCCTTTCAGACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCATGAGAGATTGCGCTGAAGGAGCTCCTCCTGTCCCTTTCAGACA  888

seq1  GACTCCTTTGTCTGAGACTTAGGAAGATTGGATTGTGCAGCATGCGATGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTTTGTCTGAGACTTAGGAAGATTGGATTGTGCAGCATGCGATGT  938

seq1  GTGAGAATTC  958
      ||||||||||
seq2  GTGAGAATTC  948