BAC Information

Click to search

BAC

Clone NameB6Ng01-047K09
Chromosome2 (Build37)2 (Build37)
Map Location 107,531,386 - 107,532,508142,776,658 - 142,777,698
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneC130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
Downstream geneLOC100043078, LOC668790
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047K09.bB6Ng01-047K09.g
ACCDH872455DH872456
length1,093929
definitionDH872455|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K09, 5' end.DH872456|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(107,531,386 - 107,532,508)(142,776,658 - 142,777,698)
sequence
gaattcacattttcacatttttctcacagggcattttaaatagacctgct
ctctctcaccattaaccttttccatatctttaatttacttatacttctat
gccaaacgtatgcttcttttcttttttgctctttctgaatacaatctaag
agccctggagaataataattttatcactaagtttagaatgatttggaact
ttttctactaacaaaatagttgttaaattttaaattcatacttagtcaaa
ttttatgacatgggcaaagtgaagcgagattgttttctagagtatatttt
gaaaaacttccagctcttctctgaataagctccctgtccttgtctgtcat
gagtttctactcttggcctttctatcagaatccttttctttaacactctt
actagaatggcccattaaaccctgtttacagcattctgaggattttttag
gacatggttcagtccttttctatgatcctattgaaaaacagttccaaatg
cctaggaaccatatgtaaattcatagaaacatgcccactctcaatattgc
ttttctatattagttattttttattactgtggctgcatgagtacctcata
aaggcaaatatatgggtacattttatctcctgggttagagaggatagagt
ccatcatggtgtggtaagcttggctgtggaacattatgtccatagtcaca
atgcagagatggatgagtaaagataatctttaagatcattttcctatggt
tttatgttgaccaatttgcagtagtcttactatttttctaaaaataccaa
tttctagttaatttttggctgtcattgctagttaatggtttcatattttc
ttaatttattcttcatcttccatttagatgtccagtagaaacttttattc
taatcctaacttcagtctttgactctaggacagtatattcagcaaactgc
tccatgtcatggcttccctctctgctgcactcagcagtttgggtatatca
cagtactgaactcatgtagatgctttattcgatcaaaattttctgcttag
taagagatcagctcattacttcaatttaagagtatcttcatgg
gaattctttgttaagctctgagccccattttttaatggggttatctgatt
ttctggagtccaacttcttcagttctttatatatatattagatatcagtt
ccctatctgatttaggataggtaaagatcctttcccagtctgttggtggc
ctttttgtcttattgatggtgttctttgccttacagaagctttgcaattt
tatgaggtcccatttgtcaattctcaattttgcagcacaagccattgctg
ttctattcaggaatttttcccctgtgcccatatctttgaggcttttcccc
actttctcctctataggtttcactgtctctggttttatgtggagttcctt
gatccactaagatttgtccttagtacaaggatataggaatggatcaattc
ccattcttcgacatgttaacaaccagttgtgtcagcaccatttgttgaaa
atgctgtcttttttccactggatggtttttgctcccttgtcaaagaaaaa
gtgaccaaaggtgtgtgggttcatttctgggtcttcaattctattctact
ggtctacttgtctgtcgctatatcagtaccatgcagttttttttatcaca
attgctctgtagtacagctttaggtcagacatggtgattctaccagagat
acttttatccttgagaagactttttgctatcataggttttttgttattcc
agatgaaattgcagattgctttttcttattcgttgaagaattgagttgga
atttgatggggcttgcattgaatctgtagattgcttttggcaagatagac
atttttactatattgatctgccaatccatgagcatgggagatctttccac
cttctgagatcttcttaatttctttcttcagagacttgaagttcttttca
tacagatcattcacttccttagtagagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_107531386_107532508
seq2: B6Ng01-047K09.b_46_1138

seq1  GAATTCACATTTTCACATTTTTCTCACAGGGCATTTTAAATAGACCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTTCACATTTTTCTCACAGGGCATTTTAAATAGACCTGCT  50

seq1  CTCTCTCACCATTAACCTTTTCCATATCTTTAATTTACTTATACTTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCACCATTAACCTTTTCCATATCTTTAATTTACTTATACTTCTAT  100

seq1  GCCAAACGTATGCTTCTTTTCTTTTTTGCTCTTTCTGAATACAATCTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACGTATGCTTCTTTTCTTTTTTGCTCTTTCTGAATACAATCTAAG  150

seq1  AGCCCTGGAGAATAATAATTTTATCACTAAGTTTAGAATGATTTGGAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGAGAATAATAATTTTATCACTAAGTTTAGAATGATTTGGAACT  200

seq1  TTTTCTACTAACAAAATAGTTGTTAAATTTTAAATTCATACTTAGTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACTAACAAAATAGTTGTTAAATTTTAAATTCATACTTAGTCAAA  250

seq1  TTTTATGACATGGGCAAAGTGAAGCGAGATTGTTTTCTAGAGTATATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGACATGGGCAAAGTGAAGCGAGATTGTTTTCTAGAGTATATTTT  300

seq1  GAAAAACTTCCAGCTCTTCTCTGAATAAGCTCCCTGTCCTTGTCTGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACTTCCAGCTCTTCTCTGAATAAGCTCCCTGTCCTTGTCTGTCAT  350

seq1  GAGTTTCTACTCTTGGCCTTTCTATCAGAATCCTTTTCTTTAACACTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTACTCTTGGCCTTTCTATCAGAATCCTTTTCTTTAACACTCTT  400

seq1  ACTAGAATGGCCCATTAAACCCTGTTTACAGCATTCTGAGGATTTTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAATGGCCCATTAAACCCTGTTTACAGCATTCTGAGGATTTTTTAG  450

seq1  GACATGGTTCAGTCCTTTTCTATGATCCTATTGAAAAACAGTTCCAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGTTCAGTCCTTTTCTATGATCCTATTGAAAAACAGTTCCAAATG  500

seq1  CCTAGGAACCATATGTAAATTCATAGAAACATGCCCACTCTCAATATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGAACCATATGTAAATTCATAGAAACATGCCCACTCTCAATATTGC  550

seq1  TTTTCTATATTAGTTATTTTTTATTACTGTGGCTGCATGAGTACCTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATATTAGTTATTTTTTATTACTGTGGCTGCATGAGTACCTCATA  600

seq1  AAGGCAAATATATGGGTACATTTTATCTCCTGGGTTAGAGAGGATAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAATATATGGGTACATTTTATCTCCTGGGTTAGAGAGGATAGAGT  650

seq1  CCATCATGGTGTGGTAAGCTTGGCTGTGGAACATTATGTCCATAGTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATGGTGTGGTAAGCTTGGCTGTGGAACATTATGTCCATAGTCACA  700

seq1  ATGCAGAGATGGATGAGTAAAGATAATCTTTAAGATCATTTTCCTATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGATGGATGAGTAAAGATAATCTTTAAGATCATTTTCCTATGGT  750

seq1  TTTATGTTGACCAATTTGCAGTAGTCTTACTATTTTTCTAAAAATACCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTGACCAATTTGCAGTAGTCTTACTATTTTTCTAAAAATACCAA  800

seq1  TTTCTAGTTAATTTTTGGCTGTCATTGCTAGTTAATGGTTTCATATTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGTTAATTTTTGGCTGTCATTGCTAGTTAATGGTTTCATATTTTC  850

seq1  TTAATTTATTCTTCATCTTCCATTTAGATGTCCAGTAGAAACTTTTATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTATTCTTCATCTTCCATTTAGATGTCCAGTAGAAACTTTTATTC  900

seq1  TAATCCTAACTTCAGTCTTTGACTCTAGGACAAGTTATTAATTCAAGCAA  950
      ||||||||||||||||||||||||||||||||   |||  |||| |||||
seq2  TAATCCTAACTTCAGTCTTTGACTCTAGGACA--GTAT--ATTC-AGCAA  945

seq1  ACTGCTTCCATTGTCATGGCTTCCCTCTCTGCTGCCACTCAGGCAGTTTG  1000
      ||||| |||| ||||||||||||||||||||||| |||||| ||||||||
seq2  ACTGC-TCCA-TGTCATGGCTTCCCTCTCTGCTG-CACTCA-GCAGTTTG  991

seq1  GGTATATTCACAGGTACTGAAACTCAGTGTTAGATGGCTTTATTCGATTT  1050
      |||||| ||||| |||||| |||||| || ||||| ||||||||||||  
seq2  GGTATA-TCACA-GTACTG-AACTCA-TG-TAGAT-GCTTTATTCGAT--  1033

seq1  AAAAAATTTTTCTGCCATAGTAAAGAGGATCAGCTCAATTACTTTCAACA  1100
         ||| ||||||| | |||| |||| ||||||||| ||||| ||||  |
seq2  --CAAAATTTTCTG-CTTAGT-AAGA-GATCAGCTC-ATTAC-TTCA--A  1074

seq1  TTTAGGAAGTTAATTCTTCATGG  1123
      |||| | |||    |||||||||
seq2  TTTAAG-AGT---ATCTTCATGG  1093

seq1: chr2_142776658_142777698
seq2: B6Ng01-047K09.g_68_650 (reverse)

seq1  CATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAA  50
      |||||||||| ||||| ||||||||||||||||| | |||||||||||||
seq2  CATGGTACTGATATAGCGACAGACAAGTAGACCAGTAGAATAGAATTGAA  50

seq1  GACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGG  100
      ||||||||||||||||||||||||| |||||||||  |||| ||||||||
seq2  GACCCAGAAATGAACCCACACACCTTTGGTCACTTTTTCTTTGACAAGGG  100

seq1  AGCTAAAACCATCCAGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCT  150
      ||| |||||||||||| |||| |||||||||||||||||||| |||||||
seq2  AGCAAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCT  150

seq1  GGCACAACTGGTTGTTATCATGTAGAAGAATGGGAATCGATCCATACTTA  200
      | ||||||||||||||| ||||| ||||||||||||| ||||||| | ||
seq2  GACACAACTGGTTGTTAACATGTCGAAGAATGGGAATTGATCCATTCCTA  200

seq1  TCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAA  250
      | |||||||||||||| ||||||| |||||||||||||||| ||||||||
seq2  TATCCTTGTACTAAGGACAAATCTTAGTGGATCAAGGAACTCCACATAAA  250

seq1  ACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAG  300
      |||||||||| |||||| |||||||||||||||||||||||||||  |||
seq2  ACCAGAGACAGTGAAACCTATAGAGGAGAAAGTGGGGAAAAGCCTCAAAG  300

seq1  ATATGGGCACAGGGGACAAATTCCTGAACAGAACAGCAATGGCTTGTGCT  350
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  ATATGGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCT  350

seq1  GTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTG  400
      | || || ||||||||||||||||||||| || ||| | ||||| |||||
seq2  GCAAAATTGAGAATTGACAAATGGGACCTCATAAAATTGCAAAGCTTCTG  400

seq1  CAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGG  450
       ||||||||  ||||| |||||||||||||||| ||||||||||| ||||
seq2  TAAGGCAAAGAACACCATCAATAAGACAAAAAGGCCACCAACAGACTGGG  450

seq1  AAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCA--ACA  498
      ||||||||||||||||||||||||||||||||| ||| ||||| |  | |
seq2  AAAGGATCTTTACCTATCCTAAATCAGATAGGGAACTGATATCTAATATA  500

seq1  TATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATT  548
      ||||||||||||| |||||| |||||| |||||||||| |||||||||||
seq2  TATATAAAGAACTGAAGAAGTTGGACTCCAGAAAATCAGATAACCCCATT  550

seq1  AAAAAATGGGGCTCACAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  598
      |||||||||||||||           ||   || |||||   |       
seq2  AAAAAATGGGGCTCA----------GAGCTTAACAAAGAATTC-------  583

seq1  ACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATC  648
                                                        
seq2  --------------------------------------------------  583

seq1  GATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGA  698
                                                        
seq2  --------------------------------------------------  583

seq1  ACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  748
                                                        
seq2  --------------------------------------------------  583

seq1  AAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAAGAGCA  798
                                                        
seq2  --------------------------------------------------  583

seq1  ATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACT  848
                                                        
seq2  --------------------------------------------------  583

seq1  CCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGACCAC  898
                                                        
seq2  --------------------------------------------------  583

seq1  CAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  948
                                                        
seq2  --------------------------------------------------  583

seq1  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAA  998
                                                        
seq2  --------------------------------------------------  583

seq1  TAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1041
                                                 
seq2  -------------------------------------------  583