BAC Information

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BAC

Clone NameB6Ng01-047N02
Chromosome2 (Build37)
Map Location 125,641,413 - 125,743,512
singlet/doubletdoublet
Overlap geneCops2, Galk2
Upstream geneSlc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1, Cep152, Shc4, Eid1, 3110001I20Rik
Downstream geneFgf7, Dtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047N02.bB6Ng01-047N02.g
ACCDH872573DH872574
length3411,106
definitionDH872573|Mus musculus domesticus DNA, BAC clone: B6Ng01-047N02, 5' end.DH872574|Mus musculus domesticus DNA, BAC clone: B6Ng01-047N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,641,413 - 125,641,753)(125,742,394 - 125,743,512)
sequence
actctgaaaccaaggctggccttgaattcctgatccttctgcctccatct
ttgctacaaccaactctttttttttttttttaatttaaaccaactttact
gaggtttaactgatgtaccacacagttcacccttacggaaggacataatt
tgatgattttttaaagagaattcactaagtttgtgcaactatcatcacat
ccaattttacaacattcacagtttctatgatcgtttaaagccagcctctg
cttagtgtttttttcaaattttatctttgacatcatcatcatcatcgttc
atatgtgtgtgtgtgtgtgtgtgtgtgtgtatgtggtgtgg
gaattccttcgttaatgtggttagtgtaatttagcctccccattgagttg
aagtgtaaaaagatagacttttgaattaaagccaaaataatgacaagcta
ttaccaagaaatggtcattccctgaggtctctggggatacagagatttaa
tgaggcagaccctataatggcaaaccttttgcagcagtgcacagggaatg
ctacactgaaggcagcgattaaatggggcctcgtaagcccagtagattca
acaaaggaaggagaagtctattaagcccacttcccagtaacccacctcac
aaaatcatgccagaggcagggagggtattgggtgagaaaaaacatgtgaa
ttaaatccttctgtagccagcagtgcactcgccagctgcctcctaatgtg
gaggcctcaatttcataaaccatggctgacattgtttatctttcctttcc
tataatgcactaagtacatgactaaagaaacccaaaaagcctgaaagaca
gtcttgacttctgtcaacaccacccacggaagaaaaaaataacattagaa
cacatacgaaagcgtgcaaatgatgggcagccttcagctcagcagagcac
gctgcccagcagagcacgcgaagtccacctgtcactgcagaagctctggc
tgaccctcatgcttgcccacaccagctgtgggatcatttgaagttatata
tactactgaacaacttcttacaatgtaacacaaagctttaggaattaagc
ctgtgtagtataaaccccttaaagatcacaatacttagagatacggacac
atgtaaatatttgttactcaaaccaaattccagttgcctggtagtttctt
tgggagtctgcccatgtcgttacactgaaatgtgataaaatacaaactct
gaatgactgcaagggagataacgtgacccgataaaacacgtgcagtttag
agattacactggcttggggtatttttaatcttaggcatctcaattaatct
agcttagtacattttattcgagcaatgagataaaggaaacttgagatgct
taaatatcaacacaacagtcaagagagttaatcttaaaagcagaatgcat
ttacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_125641413_125641753
seq2: B6Ng01-047N02.b_50_390

seq1  ACTCTGAAACCAAGGCTGGCCTTGAATTCCTGATCCTTCTGCCTCCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAAACCAAGGCTGGCCTTGAATTCCTGATCCTTCTGCCTCCATCT  50

seq1  TTGCTACAACCAACTCTTTTTTTTTTTTTTTAATTTAAACCAACTTTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACAACCAACTCTTTTTTTTTTTTTTTAATTTAAACCAACTTTACT  100

seq1  GAGGTTTAACTGATGTACCACACAGTTCACCCTTACGGAAGGACATAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTAACTGATGTACCACACAGTTCACCCTTACGGAAGGACATAATT  150

seq1  TGATGATTTTTTAAAGAGAATTCACTAAGTTTGTGCAACTATCATCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATTTTTTAAAGAGAATTCACTAAGTTTGTGCAACTATCATCACAT  200

seq1  CCAATTTTACAACATTCACAGTTTCTATGATCGTTTAAAGCCAGCCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTACAACATTCACAGTTTCTATGATCGTTTAAAGCCAGCCTCTG  250

seq1  CTTAGTGTTTTTTTCAAATTTTATCTTTGACATCATCATCATCATCGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGTTTTTTTCAAATTTTATCTTTGACATCATCATCATCATCGTTC  300

seq1  ATATGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGGTGTGG  341
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGGTGTGG  341

seq1: chr2_125742394_125743512
seq2: B6Ng01-047N02.g_68_1173 (reverse)

seq1  ATGTAAAAATGGCAAATTCTTGGCTTTTAAGGAATTAAAACTCTTGACTG  50
      ||||  |||||    |||||  |||||||||  |||||  ||||||||||
seq2  ATGT--AAATG---CATTCT--GCTTTTAAG--ATTAACTCTCTTGACTG  41

seq1  TTGTGTTGATATTTAAGCATCCTCAAGTTTTCCTTTATCTCATTGCCTCG  100
      |||||||||||||||||||| |||||| ||||||||||||||||| ||||
seq2  TTGTGTTGATATTTAAGCAT-CTCAAG-TTTCCTTTATCTCATTG-CTCG  88

seq1  GAAATAAAATGTACTAAGCTAGGAATAAATTGAGATGCCTAAGA-TAAAA  149
        ||||||||||||||||||||  || ||||||||||||||||| |||||
seq2  --AATAAAATGTACTAAGCTAG--ATTAATTGAGATGCCTAAGATTAAAA  134

seq1  ATACCCCAAGCCAGTGTAAT-TCTAAACTGCCACTGTGTGTATCGGGTCA  198
      |||||||||||||||||||| ||||||||||   ||| | ||||||||||
seq2  ATACCCCAAGCCAGTGTAATCTCTAAACTGCACGTGT-TTTATCGGGTCA  183

seq1  CGTTATCTCCCTTGCAGTCATTCAGAGTTTGTA-TATATCACATTTCAGT  247
      ||||||||||||||||||||||||||||||||| | ||||||||||||||
seq2  CGTTATCTCCCTTGCAGTCATTCAGAGTTTGTATTTTATCACATTTCAGT  233

seq1  GTAACGACATGGGCAGACT-CCAAAGAAACTACCAGGCAACTGGAATTTG  296
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTAACGACATGGGCAGACTCCCAAAGAAACTACCAGGCAACTGGAATTTG  283

seq1  GTTTGAGTAACAAATATTTACATGTGTCCGTATCTCTAAGTATTGTGATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTAACAAATATTTACATGTGTCCGTATCTCTAAGTATTGTGATC  333

seq1  TTTAAGGGGTTTATACTACACAGGCTTAATTCCTAAAGCTTTGTGTTACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGGGTTTATACTACACAGGCTTAATTCCTAAAGCTTTGTGTTACA  383

seq1  TTGTAAGAAGTTGTTCAGTAGTATATATAACTTCAAATGATCCCACAGCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGAAGTTGTTCAGTAGTATATATAACTTCAAATGATCCCACAGCT  433

seq1  GGTGTGGGCAAGCATGAGGGTCAGCCAGAGCTTCTGCAGTGACAGGTGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGGCAAGCATGAGGGTCAGCCAGAGCTTCTGCAGTGACAGGTGGA  483

seq1  CTTCGCGTGCTCTGCTGGGCAGCGTGCTCTGCTGAGCTGAAGGCTGCCCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGCGTGCTCTGCTGGGCAGCGTGCTCTGCTGAGCTGAAGGCTGCCCA  533

seq1  TCATTTGCACGCTTTCGTATGTGTTCTAATGTTATTTTTTTCTTCCGTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGCACGCTTTCGTATGTGTTCTAATGTTATTTTTTTCTTCCGTGG  583

seq1  GTGGTGTTGACAGAAGTCAAGACTGTCTTTCAGGCTTTTTGGGTTTCTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTTGACAGAAGTCAAGACTGTCTTTCAGGCTTTTTGGGTTTCTTT  633

seq1  AGTCATGTACTTAGTGCATTATAGGAAAGGAAAGATAAACAATGTCAGCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTACTTAGTGCATTATAGGAAAGGAAAGATAAACAATGTCAGCC  683

seq1  ATGGTTTATGAAATTGAGGCCTCCACATTAGGAGGCAGCTGGCGAGTGCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTATGAAATTGAGGCCTCCACATTAGGAGGCAGCTGGCGAGTGCA  733

seq1  CTGCTGGCTACAGAAGGATTTAATTCACATGTTTTTTCTCACCCAATACC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCTACAGAAGGATTTAATTCACATGTTTTTTCTCACCCAATACC  783

seq1  CTCCCTGCCTCTGGCATGATTTTGTGAGGTGGGTTACTGGGAAGTGGGCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGCCTCTGGCATGATTTTGTGAGGTGGGTTACTGGGAAGTGGGCT  833

seq1  TAATAGACTTCTCCTTCCTTTGTTGAATCTACTGGGCTTACGAGGCCCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGACTTCTCCTTCCTTTGTTGAATCTACTGGGCTTACGAGGCCCCA  883

seq1  TTTAATCGCTGCCTTCAGTGTAGCATTCCCTGTGCACTGCTGCAAAAGGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCGCTGCCTTCAGTGTAGCATTCCCTGTGCACTGCTGCAAAAGGT  933

seq1  TTGCCATTATAGGGTCTGCCTCATTAAATCTCTGTATCCCCAGAGACCTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATTATAGGGTCTGCCTCATTAAATCTCTGTATCCCCAGAGACCTC  983

seq1  AGGGAATGACCATTTCTTGGTAATAGCTTGTCATTATTTTGGCTTTAATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATGACCATTTCTTGGTAATAGCTTGTCATTATTTTGGCTTTAATT  1033

seq1  CAAAAGTCTATCTTTTTACACTTCAACTCAATGGGGAGGCTAAATTACAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTCTATCTTTTTACACTTCAACTCAATGGGGAGGCTAAATTACAC  1083

seq1  TAACCACATTAACGAAGGAATTC  1119
      |||||||||||||||||||||||
seq2  TAACCACATTAACGAAGGAATTC  1106