BAC Information

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BAC

Clone NameB6Ng01-047N12
Chromosome2 (Build37)
Map Location 174,830,855 - 174,934,612
singlet/doubletdoublet
Overlap geneLOC545487, LOC100043760
Upstream geneLOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3
Downstream geneLOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915, LOC668009, LOC100038953, LOC620804, LOC100039000, LOC100043126, LOC100039017, LOC100039036, LOC100039049, LOC626832, OTTMUSG00000016203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047N12.bB6Ng01-047N12.g
ACCDH872589DH872590
length1,1001,168
definitionDH872589|Mus musculus domesticus DNA, BAC clone: B6Ng01-047N12, 5' end.DH872590|Mus musculus domesticus DNA, BAC clone: B6Ng01-047N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,830,855 - 174,831,983)(174,933,434 - 174,934,612)
sequence
gaattcccattttaggatatgtattatgtagatttgtgcaatccttgttg
acatatttaattgagctcagaaatgtaaagcacatgccattagctgtctc
tgtgtgagtcagattatagatcttagtagttaacaaagcacttaagggaa
aggtcaaacactatctcatgaatgacattccttctaccaagaaaggcctg
atctttttctaatcagtacagtgacatatttttaattttttttctttttt
aaagatttacttatttattatatgtaaatacactgtagctgtcttcagac
actccagaagagggcatcagatcgcattacgggtggatgtgagccaccat
gtggttgctgggatttgactcaggaccttcagatgagcagttggtgttct
taaccactgagtcatctctccagcccttggtattactttttaaattccat
tttctttatgtataggtgccctgatctcttacttgtttctattctccaat
gtttcccagaaatcaatagttttattcctatttgtaaagattttacatat
ctgtctgtttacagcaacatctgtagttcaggctttccttatgccatgta
gttaatacttgctttgagcatctgagcctaaaaactttcttgctctttct
gagggtaaaagactaagggcttccgtgattatcacctgtagcctaacagc
tgaggattaagcagtgtggcctttggtctatctcagaaggaactgctggg
ctctaacttttagcctgcaagtcagaagtcacaggaagaaaatgggatgc
tcaagaagtggttatggagtttattactaagttgtaacaagttacctatg
aaagctatctaagaggaaaagcgaaagatcctaagtggggaaggcaaaaa
cttctcctttctctttcttatctctttgtctcatacttatacatctcagt
atacatgatcacatgtacagtcatcacagttctcacaaaaatcaatcata
cactgaatagagtttacaacagagaatgtttacatgtaaatcataagagt
attactatggctagtatcatcgcctgttcagatcctcagtcctgaaggtt

gaattcactctgtatacaggcaggcctcgaactcagaaatccacctacct
ctgcctccctagtgctgggattaaaggtgtgtaccaccactgcccggctc
attcttatttttaaagagattttatatatgtctgtttagagaaacatctc
ttgtagctcttactttctttatgccatgtaatcagacttgctttgaactc
ctaatcctccctctgctgcccagggcttggaaaacagtcctacaactgct
ttcaggctgggttctgactgatcagtgagacaaaagacaccagggaatga
gtgttgtctaacctccctgggttacagggttacaagttagggaattacaa
ataaagagggacaggtataaggttgagttcactgaccaactttgaagctg
gtctacttgcagcacagaaaaggaggaggaataaggtaggtgaggccttt
ctgctttggcagtagttgacattcaccatgaggagtcaagtaatcaattt
tacacaatcagtaaaattccatactggacattttgtggcatttcccagat
tagggcaatgacaaatgagatcatggtccctctctgttacagcatattgc
tggcatacctcaccatcaaccccaggagtagggctgccaatctcccagct
gccattcctcatggaatccaatcatttgggaactggcctttttatctatc
attagtcatcctgatctcctggtctaactcttgcttctcccctccttcct
ctctccacaaagttcaaggttatgtctactctctaccatcccaaatataa
ctaggtctggctatgttctcacttttgtgtataatatactttctcctcca
ccatacctaggagcaatgctatcctttacttttaatttcatctttgtctt
cccttttctctcccataactgcttctagctttaaaattcatagcactttt
acttttaaattattgttaatgtatgaattttatttcagttcagctgcaga
ctttctattagaaatagagatgctgcacaggacaattgcatgcataattg
aatatacaagaaaggaccatggccttttaaattaaaatacttgggttgca
gactagaaatttcttttaaagtgtaattttgtgatataggcattgtcgca
tgtaggatgagaactcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_174830855_174831983
seq2: B6Ng01-047N12.b_47_1146

seq1  GAATTCCCATTTTAGGATATGTATTATGTAGATTTGTGCAATCCTTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTTTAGGATATGTATTATGTAGATTTGTGCAATCCTTGTTG  50

seq1  ACATATTTAATTGAGCTCAGAAATGTAAAGCACATGCCATTAGCTGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTAATTGAGCTCAGAAATGTAAAGCACATGCCATTAGCTGTCTC  100

seq1  TGTGTGAGTCAGATTATAGATCTTAGTAGTTAACAAAGCACTTAAGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGTCAGATTATAGATCTTAGTAGTTAACAAAGCACTTAAGGGAA  150

seq1  AGGTCAAACACTATCTCATGAATGACATTCCTTCTACCAAGAAAGGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAACACTATCTCATGAATGACATTCCTTCTACCAAGAAAGGCCTG  200

seq1  ATCTTTTTCTAATCAGTACAGTGACATATTTTTAATTTTTTTTCTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTCTAATCAGTACAGTGACATATTTTTAATTTTTTTTCTTTTTT  250

seq1  AAAGATTTACTTATTTATTATATGTAAATACACTGTAGCTGTCTTCAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTACTTATTTATTATATGTAAATACACTGTAGCTGTCTTCAGAC  300

seq1  ACTCCAGAAGAGGGCATCAGATCGCATTACGGGTGGATGTGAGCCACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGAAGAGGGCATCAGATCGCATTACGGGTGGATGTGAGCCACCAT  350

seq1  GTGGTTGCTGGGATTTGACTCAGGACCTTCAGATGAGCAGTTGGTGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGCTGGGATTTGACTCAGGACCTTCAGATGAGCAGTTGGTGTTCT  400

seq1  TAACCACTGAGTCATCTCTCCAGCCCTTGGTATTACTTTTTAAATTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTGAGTCATCTCTCCAGCCCTTGGTATTACTTTTTAAATTCCAT  450

seq1  TTTCTTTATGTATAGGTGCCCTGATCTCTTACTTGTTTCTATTCTCCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTATGTATAGGTGCCCTGATCTCTTACTTGTTTCTATTCTCCAAT  500

seq1  GTTTCCCAGAAATCAATAGTTTTATTCCTATTTGTAAAGATTTTACATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCAGAAATCAATAGTTTTATTCCTATTTGTAAAGATTTTACATAT  550

seq1  CTGTCTGTTTACAGCAACATCTGTAGTTCAGGCTTTCCTTATGCCATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTTTACAGCAACATCTGTAGTTCAGGCTTTCCTTATGCCATGTA  600

seq1  GTTAATACTTGCTTTGAGCATCTGAGCCTAAAAACTTTCTTGCTCTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATACTTGCTTTGAGCATCTGAGCCTAAAAACTTTCTTGCTCTTTCT  650

seq1  GAGGGTAAAAGACTAAGGGCTTCCGTGATTATCACCTGTAGCCTAACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTAAAAGACTAAGGGCTTCCGTGATTATCACCTGTAGCCTAACAGC  700

seq1  TGAGGATTAAGCAGTGTGGCCTTTGGTCTATCTCAGAAGGAACTGCTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATTAAGCAGTGTGGCCTTTGGTCTATCTCAGAAGGAACTGCTGGG  750

seq1  CTCTAACTTTTAGCCTGCAAGTCAGAAGTCACAGGAAGAAAATGGGATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACTTTTAGCCTGCAAGTCAGAAGTCACAGGAAGAAAATGGGATGC  800

seq1  TCAAAGAAGTGGTTATGGAGTTTATTACTAAGTTGTAACAAGTTACCTAT  850
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-AAGAAGTGGTTATGGAGTTTATTACTAAGTTGTAACAAGTTACCTAT  849

seq1  GAAAGCTATCTAAGAGGAAAAGCGAAAAGATCCTAAGTGGGGAAGGGCAA  900
      |||||||||||||||||||||||| |||||||||||||||||||||   |
seq2  GAAAGCTATCTAAGAGGAAAAGCG-AAAGATCCTAAGTGGGGAAGG--CA  896

seq1  AAAACTTCTCCTTTCTCTTTTCTTTATCTCTTTGTCCTCATTACTTATAC  950
      ||||||||||||||||||||   |||||||||||| |||| |||||||||
seq2  AAAACTTCTCCTTTCTCTTT--CTTATCTCTTTGT-CTCA-TACTTATAC  942

seq1  ATCCTTCAGTATACATGATCACATGTTACCAAGTTCATCACAAGTTCTCA  1000
      |||  |||||||||||||||||||| |||  || ||||||| ||||||||
seq2  ATC--TCAGTATACATGATCACATG-TAC--AG-TCATCAC-AGTTCTCA  985

seq1  CAAAAAATCAAATCATACACTGAAATAGAAGTTTACAACAGAGAATGTTT  1050
      | ||||||| |||||||||||| ||||| |||||||||||||||||||||
seq2  C-AAAAATC-AATCATACACTG-AATAG-AGTTTACAACAGAGAATGTTT  1031

seq1  ACATGTATATCCATTAGGAGTAATTACTAATGGCTAAGTATCCATCGCCT  1100
      ||||||| |||   || |||| |||||| |||||| ||||| ||||||||
seq2  ACATGTAAATC--ATAAGAGT-ATTACT-ATGGCT-AGTAT-CATCGCCT  1075

seq1  GTATCAGATCCTCAGGTTCCCTGAAGGTT  1129
      || ||||||||||||    ||||||||||
seq2  GT-TCAGATCCTCAG---TCCTGAAGGTT  1100

seq1: chr2_174933434_174934612
seq2: B6Ng01-047N12.g_67_1234 (reverse)

seq1  CTGATGTTC-CATCCTACATGCAGACATAGCCCTAATCACAAAAATGTAC  49
      |||| |||| |||||||||||| ||||  |||   ||||||||| |  ||
seq2  CTGA-GTTCTCATCCTACATGC-GACAATGCCTATATCACAAAATTACAC  48

seq1  ATTTAAAAGAATGTTCTAGTCCTGCAGACCAAGTATTTTATATTTAAAAG  99
       ||||||||||  ||||||| |||||  |||||||||||| |||||||||
seq2  -TTTAAAAGAAATTTCTAGT-CTGCAACCCAAGTATTTTA-ATTTAAAAG  95

seq1  GCCCATGGTCCTTTCTTTGTATATTCAATTATGCATGCAA-TGTCCTGTG  148
      | ||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  G-CCATGGTCCTTTC-TTGTATATTCAATTATGCATGCAATTGTCCTGTG  143

seq1  CAGCCATCTCTATTTCTTAATATGAAAGTCTTGCAGCTGAACTGAAATAA  198
      ||| |||||||||||| ||||| ||||||| |||||||||||||||||||
seq2  CAG-CATCTCTATTTC-TAATA-GAAAGTC-TGCAGCTGAACTGAAATAA  189

seq1  AATTCATACATTAACAATAATTTAAAAGTAAAAGTGGCTATGAATTTTAA  248
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATTCATACATTAACAATAATTTAAAAGTAAAAGT-GCTATGAATTTTAA  238

seq1  AGCTAGAAGCAGTTAATGGGAGAGAAAAGGGAAGACAAAGATGAAATTAA  298
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGCTAGAAGCAGTT-ATGGGAGAGAAAAGGGAAGACAAAGATGAAATTAA  287

seq1  AAGTAAAGGATAGCATTGCTCCTAGGTATGGTGGAGGAGAAAGTATATTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAGGATAGCATTGCTCCTAGGTATGGTGGAGGAGAAAGTATATTA  337

seq1  TACACAAAAGTGAGAACATAGCCAGACCTAGTTATATTTGGGATGGTAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAAAGTGAGAACATAGCCAGACCTAGTTATATTTGGGATGGTAGA  387

seq1  GAGTAGACATAACCTTGAACTTTGTGGAGAGAGGAAGGAGGGGAGAAGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGACATAACCTTGAACTTTGTGGAGAGAGGAAGGAGGGGAGAAGCA  437

seq1  AGAGTTAGACCAGGAGATCAGGATGACTAATGATAGATAAAAAGGCCAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAGACCAGGAGATCAGGATGACTAATGATAGATAAAAAGGCCAGT  487

seq1  TCCCAAATGATTGGATTCCATGAGGAATGGCAGCTGGGAGATTGGCAGCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATGATTGGATTCCATGAGGAATGGCAGCTGGGAGATTGGCAGCC  537

seq1  CTACTCCTGGGGTTGATGGTGAGGTATGCCAGCAATATGCTGTAACAGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCTGGGGTTGATGGTGAGGTATGCCAGCAATATGCTGTAACAGAG  587

seq1  AGGGACCATGATCTCATTTGTCATTGCCCTAATCTGGGAAATGCCACAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCATGATCTCATTTGTCATTGCCCTAATCTGGGAAATGCCACAAA  637

seq1  ATGTCCAGTATGGAATTTTACTGATTGTGTAAAATTGATTACTTGACTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAGTATGGAATTTTACTGATTGTGTAAAATTGATTACTTGACTCC  687

seq1  TCATGGTGAATGTCAACTACTGCCAAAGCAGAAAGGCCTCACCTACCTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGAATGTCAACTACTGCCAAAGCAGAAAGGCCTCACCTACCTTA  737

seq1  TTCCTCCTCCTTTTCTGTGCTGCAAGTAGACCAGCTTCAAAGTTGGTCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTCCTTTTCTGTGCTGCAAGTAGACCAGCTTCAAAGTTGGTCAG  787

seq1  TGAACTCAACCTTATACCTGTCCCTCTTTATTTGTAATTCCCTAACTTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAACCTTATACCTGTCCCTCTTTATTTGTAATTCCCTAACTTGT  837

seq1  AACCCTGTAACCCAGGGAGGTTAGACAACACTCATTCCCTGGTGTCTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTAACCCAGGGAGGTTAGACAACACTCATTCCCTGGTGTCTTTT  887

seq1  GTCTCACTGATCAGTCAGAACCCAGCCTGAAAGCAGTTGTAGGACTGTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACTGATCAGTCAGAACCCAGCCTGAAAGCAGTTGTAGGACTGTTT  937

seq1  TCCAAGCCCTGGGCAGCAGAGGGAGGATTAGGAGTTCAAAGCAAGTCTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCCCTGGGCAGCAGAGGGAGGATTAGGAGTTCAAAGCAAGTCTGA  987

seq1  TTACATGGCATAAAGAAAGTAAGAGCTACAAGAGATGTTTCTCTAAACAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGGCATAAAGAAAGTAAGAGCTACAAGAGATGTTTCTCTAAACAG  1037

seq1  ACATATATAAAATCTCTTTAAAAATAAGAATGAGCCGGGCAGTGGTGGTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATAAAATCTCTTTAAAAATAAGAATGAGCCGGGCAGTGGTGGTA  1087

seq1  CACACCTTTAATCCCAGCACTAGGGAGGCAGAGGTAGGTGGATTTCTGAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTTTAATCCCAGCACTAGGGAGGCAGAGGTAGGTGGATTTCTGAG  1137

seq1  TTCGAGGCCTGCCTGTATACAGAGTGAATTC  1179
      |||||||||||||||||||||||||||||||
seq2  TTCGAGGCCTGCCTGTATACAGAGTGAATTC  1168