BAC Information

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BAC

Clone NameB6Ng01-047O23
Chromosome2 (Build37)
Map Location 25,042,840 - 25,191,674
singlet/doubletdoublet
Overlap geneA830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1
Upstream geneIl1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp
Downstream geneDpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047O23.bB6Ng01-047O23.g
ACCDH872657DH872658
length1,0391,015
definitionDH872657|Mus musculus domesticus DNA, BAC clone: B6Ng01-047O23, 5' end.DH872658|Mus musculus domesticus DNA, BAC clone: B6Ng01-047O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,190,621 - 25,191,674)(25,042,840 - 25,043,871)
sequence
gaattctttctgttaggatagttcatgagctagaggcaaaagaacacaag
gaaacaggaagcagcatccatccccatggggaaaccagcatgtgcacagg
ccctgtctagaggcaagtctgccagccaagctaagaacagctccacaggg
atggcacactcactgtccttttgcaaattctcccctctccccattatggc
ctgaccaagacacttgcctgtctactttcttgtactttctagtgagcatc
tagcaacttagaaacaagctttttgaagaagaaaaagtacaacactccct
gattagaatgaaggcactcctaaattcaccagggctgacatcccatgttt
ggatcccaggccaactttcatccattgttgacctggaaccagtactgagg
agacatttttctagagtggcaatctgcagaggtttcctgtttgtatgata
ccctatagtcttcagggatatgaaaactctacctctgcccaagactaccc
atagaagaagttgaagacttgcaacatctgctaggtgtagccttggctat
gtgaaaaaaaaaaaaaaccacaaacacaaaaacaaacaaacaaacaaaca
aacaaaacccaaatagccaaaggctttagagatgtagaactcaactgcag
tggacaactaccccaactctcaagaaatccgagtctggccctatcacaag
tcagctctcagcaactggctcttttattgccagacccctgaatttattgc
ctctgacctacctctgggctccactccatctgccccatttccacaaccct
aagcttctcagactgagtacttcaggatgaggcctggctgtcccaaccct
tctagacaactacactacctctctacccaggattccccagaatgcctctc
tatcaagggattctaataccacccaccataatggccccacgctggctggt
taggtacacacagcatcgatggagctgctcatggtcttgactctactcat
ttctcaaggcgctctgaggggaccctcactctttcacac
gaattccctccctccctccttcctttcttcctgtcgccctcctccctgtt
ctgtagccccagcggacctggagcttgagtctaggcctcaaatgtagagc
tccttcagcttctacctcccagtctcctgctgggattaaaggggtgcacc
accactgcctggcaattaagtggtttcttttgggctggtgagatggctca
tcaggtaagagcactgactgctcttccgaaggttcaaatcccagcaacta
catggtggctcacaaccatccttaatgagatctgatgccctcttctggag
tgtctgaagacagctacaatgtacttattgggctggagcaagcagggatg
gaaggagagggtggggctgaccagagtgagcagaggtcctaaattcaatt
cccagcaaccacatgaaggttcacaactatctgtacagctacagtgtact
catatacataaaacatctttaaaaaaaatggtttcttttcatttgctttg
gcatagcaatataaaagtagttaagatatacatctatcaaaacctacctt
tgaaggctgctgagatggcccagatggcacttggctacccaagcctgccg
accagagtaaaaggagaggagaccagcagctccacaggtgtcctgtgacc
tccacacactggctgtggcacacactcacgcatgcgcatcatgtacacag
ctaggcttggtagctgtcgcatgcctacagtctcagcactcagaacctgt
gagtcggaggccagccagagctacatagtgagacccagtctggagaaaat
aaattaaaattaaaaataactttttgaaccaggtgtggtgaaacgccttt
agtcccagaacttgggaggcagaggcaagaagttctgattcaggcagctt
gatctagagtgagttccaggacagcagctatacagagagacctgctcaac
ttgcacacccccaaaaatatttaatattagattgtgttgtagcataccct
ttaatcagaactagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_25190621_25191674
seq2: B6Ng01-047O23.b_48_1086 (reverse)

seq1  GTGTGGAAAAGAGTGAGGGTCCCCATACAGAGGCGCCTTTGAGAAATGAG  50
      |||||  |||||||||||||||||   |||| ||||| ||||||||||||
seq2  GTGTG--AAAGAGTGAGGGTCCCC--TCAGA-GCGCC-TTGAGAAATGAG  44

seq1  TAAGAGTCAAGGAACACTGAGCAGCTCCATCTGATGCTGTGTTGTACCTA  100
      | |||||||||  ||  |||||||||||||| ||||||||| ||||||||
seq2  T-AGAGTCAAG--ACCATGAGCAGCTCCATC-GATGCTGTG-TGTACCTA  89

seq1  A-CAGGCAGCGTGGGGCCATTATGGGTGGGTGGTATTAGAATCACCTGAT  149
      | ||| ||||||||||||||||| ||||||||||||||||||| | ||||
seq2  ACCAGCCAGCGTGGGGCCATTAT-GGTGGGTGGTATTAGAATCCCTTGAT  138

seq1  AGAGGAGGCATTTCTGGGGAATCCTGGGTAGAGAGGTAGTGTAGTTTGTC  199
      ||| |||||| ||||||||||||||||||||||||||||||||| |||||
seq2  AGA-GAGGCA-TTCTGGGGAATCCTGGGTAGAGAGGTAGTGTAG-TTGTC  185

seq1  TAGAAGGGGTTGGGACAGGCAGGCCTCATCCTGGAGTACTCAGTCTGAGA  249
      ||||| |||||||||||| |||||||||||||| ||||||||||||||||
seq2  TAGAA-GGGTTGGGACAGCCAGGCCTCATCCTGAAGTACTCAGTCTGAGA  234

seq1  AGCTTAGGGTTGTGGAAATGGGGCAGATGGAGTGGAGCCCAGAGGTAGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGGGTTGTGGAAATGGGGCAGATGGAGTGGAGCCCAGAGGTAGGT  284

seq1  CAGAGGCAATAAATTCAGGGGTCTGGCAATAAAAGAGCCAGTTGCTGAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAATAAATTCAGGGGTCTGGCAATAAAAGAGCCAGTTGCTGAGA  334

seq1  GCTGACTTGTGATAGGGCCAGACTCGGATTTCTTGAGAGTTGGGGTAGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTTGTGATAGGGCCAGACTCGGATTTCTTGAGAGTTGGGGTAGTT  384

seq1  GTCCACTGCAGTTGAGTTCTACATCTCTAAAGCCTTTGGCTATTTGGGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTGCAGTTGAGTTCTACATCTCTAAAGCCTTTGGCTATTTGGGTT  434

seq1  TTGTTTGTTTGTTTGTTTGTTTGTTTTTGTGTTTGTGGTTTTTTTTTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTGTTTGTTTGTTTTTGTGTTTGTGGTTTTTTTTTTTT  484

seq1  TTCACATAGCCAAGGCTACACCTAGCAGATGTTGCAAGTCTTCAACTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATAGCCAAGGCTACACCTAGCAGATGTTGCAAGTCTTCAACTTCT  534

seq1  TCTATGGGTAGTCTTGGGCAGAGGTAGAGTTTTCATATCCCTGAAGACTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGGTAGTCTTGGGCAGAGGTAGAGTTTTCATATCCCTGAAGACTA  584

seq1  TAGGGTATCATACAAACAGGAAACCTCTGCAGATTGCCACTCTAGAAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTATCATACAAACAGGAAACCTCTGCAGATTGCCACTCTAGAAAAA  634

seq1  TGTCTCCTCAGTACTGGTTCCAGGTCAACAATGGATGAAAGTTGGCCTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTCAGTACTGGTTCCAGGTCAACAATGGATGAAAGTTGGCCTGG  684

seq1  GATCCAAACATGGGATGTCAGCCCTGGTGAATTTAGGAGTGCCTTCATTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAAACATGGGATGTCAGCCCTGGTGAATTTAGGAGTGCCTTCATTC  734

seq1  TAATCAGGGAGTGTTGTACTTTTTCTTCTTCAAAAAGCTTGTTTCTAAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGGGAGTGTTGTACTTTTTCTTCTTCAAAAAGCTTGTTTCTAAGT  784

seq1  TGCTAGATGCTCACTAGAAAGTACAAGAAAGTAGACAGGCAAGTGTCTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGATGCTCACTAGAAAGTACAAGAAAGTAGACAGGCAAGTGTCTTG  834

seq1  GTCAGGCCATAATGGGGAGAGGGGAGAATTTGCAAAAGGACAGTGAGTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCCATAATGGGGAGAGGGGAGAATTTGCAAAAGGACAGTGAGTGT  884

seq1  GCCATCCCTGTGGAGCTGTTCTTAGCTTGGCTGGCAGACTTGCCTCTAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCCTGTGGAGCTGTTCTTAGCTTGGCTGGCAGACTTGCCTCTAGA  934

seq1  CAGGGCCTGTGCACATGCTGGTTTCCCCATGGGGATGGATGCTGCTTCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCTGTGCACATGCTGGTTTCCCCATGGGGATGGATGCTGCTTCCT  984

seq1  GTTTCCTTGTGTTCTTTTGCCTCTAGCTCATGAACTATCCTAACAGAAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTGTGTTCTTTTGCCTCTAGCTCATGAACTATCCTAACAGAAAG  1034

seq1  AATTC  1054
      |||||
seq2  AATTC  1039

seq1: chr2_25042840_25043871
seq2: B6Ng01-047O23.g_67_1081

seq1  GAATTCCCTCCCTCCCTCCTTCCTTTCTTCCTGTCGCCCTCCTCCCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCCCTCCCTCCTTCCTTTCTTCCTGTCGCCCTCCTCCCTGTT  50

seq1  CTGTAGCCCCAGCGGACCTGGAGCTTGAGTCTAGGCCTCAAATGTAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCCCCAGCGGACCTGGAGCTTGAGTCTAGGCCTCAAATGTAGAGC  100

seq1  TCCTTCAGCTTCTACCTCCCAGTCTCCTGCTGGGATTAAAGGGGTGCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGCTTCTACCTCCCAGTCTCCTGCTGGGATTAAAGGGGTGCACC  150

seq1  ACCACTGCCTGGCAATTAAGTGGTTTCTTTTGGGCTGGTGAGATGGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGCCTGGCAATTAAGTGGTTTCTTTTGGGCTGGTGAGATGGCTCA  200

seq1  TCAGGTAAGAGCACTGACTGCTCTTCCGAAGGTTCAAATCCCAGCAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAAGAGCACTGACTGCTCTTCCGAAGGTTCAAATCCCAGCAACTA  250

seq1  CATGGTGGCTCACAACCATCCTTAATGAGATCTGATGCCCTCTTCTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGCTCACAACCATCCTTAATGAGATCTGATGCCCTCTTCTGGAG  300

seq1  TGTCTGAAGACAGCTACAATGTACTTATTGGGCTGGAGCAAGCAGGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAGACAGCTACAATGTACTTATTGGGCTGGAGCAAGCAGGGATG  350

seq1  GAAGGAGAGGGTGGGGCTGACCAGAGTGAGCAGAGGTCCTAAATTCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGAGGGTGGGGCTGACCAGAGTGAGCAGAGGTCCTAAATTCAATT  400

seq1  CCCAGCAACCACATGAAGGTTCACAACTATCTGTACAGCTACAGTGTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAACCACATGAAGGTTCACAACTATCTGTACAGCTACAGTGTACT  450

seq1  CATATACATAAAACATCTTTAAAAAAAATGGTTTCTTTTCATTTGCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACATAAAACATCTTTAAAAAAAATGGTTTCTTTTCATTTGCTTTG  500

seq1  GCATAGCAATATAAAAGTAGTTAAGATATACATCTATCAAAACCTACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCAATATAAAAGTAGTTAAGATATACATCTATCAAAACCTACCTT  550

seq1  TGAAGGCTGCTGAGATGGCCCAGATGGCACTTGGCTACCCAAGCCTGCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCTGCTGAGATGGCCCAGATGGCACTTGGCTACCCAAGCCTGCCG  600

seq1  ACCAGAGTAAAAGGAGAGGAGACCAGCAGCTCCACAGGTGTCCTGTGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGTAAAAGGAGAGGAGACCAGCAGCTCCACAGGTGTCCTGTGACC  650

seq1  TCCACACACTGGCTGTGGCACACACTCACGCATGCGCATCATGTACACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACACTGGCTGTGGCACACACTCACGCATGCGCATCATGTACACAG  700

seq1  CTAGGCTTGGTAGCTGTCGCATGCCTACAGTCTCAGCACTCAGAACCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTTGGTAGCTGTCGCATGCCTACAGTCTCAGCACTCAGAACCTGT  750

seq1  GAGTCGGAGGCCAGCCAGAGCTACATAGTGAGACCCAGTCTGGAGAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCGGAGGCCAGCCAGAGCTACATAGTGAGACCCAGTCTGGAGAAAAT  800

seq1  AAATTAAAATTAAAAATAACTTTTTGAACCAGGTGTGGTGAAACGCCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAATTAAAAATAACTTTTTGAACCAGGTGTGGTGAAACGCCTTT  850

seq1  AGTCCCAGAACTTGGGAGGCAGAGGCAAGAAGTTCTGATTCAAGGCCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||  | ||||
seq2  AGTCCCAGAACTTGGGAGGCAGAGGCAAGAAGTTCTGATTCA--GGCAGC  898

seq1  CTGATCTAGAGTGAGTTCCAGGACAGCCAAGGCTATACAGAGAGACCCTG  950
       ||||||||||||||||||||||||||    |||||||||||||| ||||
seq2  TTGATCTAGAGTGAGTTCCAGGACAGC---AGCTATACAGAGAGA-CCTG  944

seq1  CCTCAAACCTGCACACCCCCCAAAAAATAATTTAATATTAAGATTGGTGG  1000
       ||| ||| |||||||||||  |||||| |||||||||| ||||||   |
seq2  -CTC-AACTTGCACACCCCC--AAAAAT-ATTTAATATT-AGATTG--TG  986

seq1  TTGTAGCATACACCTTTAATCCAAGAACTAGG  1032
      ||||||||||| |||||||||  |||||||||
seq2  TTGTAGCATAC-CCTTTAATC--AGAACTAGG  1015