BAC Information

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BAC

Clone NameB6Ng01-048C21
Chromosome2 (Build37)2 (Build37)
Map Location 80,331,366 - 80,331,9437,655,395 - 7,655,809
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSsfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb
Downstream geneNckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048C21.bB6Ng01-048C21.g
ACCDH872815DH872816
length892409
definitionDH872815|Mus musculus domesticus DNA, BAC clone: B6Ng01-048C21, 5' end.DH872816|Mus musculus domesticus DNA, BAC clone: B6Ng01-048C21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,331,366 - 80,331,943)(7,655,395 - 7,655,809)
sequence
gaattcctgatcgttccaagacttttatcatgaatgggtgttggatcttg
ttgaatgcttttcccgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatactggattacgttgatggatttccatatattgaacc
atccctgcatccctgcgataaaacctacttggtcaggatggatgattgtt
ttgatgtgttcttggattcggttagcgagaactttatttagtatttttgc
atcgatattcataagggaaattggtctgaagttctctatctttgttggtc
tttctgtggtttaggtatcatagtaattgtggcttcatagaataaattag
gtagagtaccttctgcttctattttgtggaatagtttgtgaagaactgta
attagatcttcattgaaggtctaatagaactctgcactaaacccatttgt
tcctgggctttttttggttggagactattaatgactgcttctatttcttt
aggggatataggactgtttagatcataaacctgatcttggtttaactttg
gtacctggtatctgtctagaaacttgtccatttcatccaggttctccagt
tttgtgattatagccttttgtagaaggatctgatagtgttttggatttct
tcaggatctgttgttatgtctcccttttcatttcagattttgttaattag
gatgctgtccctgtgccctctagtgagtctggctaaggtttatctatcgt
gttgattttctcaaagaaccagcttctcgtttgttgattctttgaatagt
tcttcttgtttccacttggttgattttgcccctgagttgataatttcctg
ccgtctactcctcttgggtgaatttgcttccttttttttttt
tcttctgaaaaacctcatctgagagccagagcttctcatttggaaaggct
accttgtggcatcttcctagagtttttggttgaggaccagtgtccttccc
atgtcctgtttttcatagcatggcttgtgctctgttttattaggaaagga
gagtgtactcgtcgttatgttatgaaagtattgctcttttcacccatcag
ctactagactgaaaaaaattgccttattatgaagttgatagtgaaagttt
cagggagcagatgttctaattactccaaacatgcccatcggataaaaaga
aagtcagaattttacttgtgagaataccaagcaggaattttttttttaaa
gtgtgtgtgcatgtgcatgcaagtgtatgtgtgtgtgcgtgtgtgtgtgt
gtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_80331366_80331943
seq2: B6Ng01-048C21.b_42_617 (reverse)

seq1  CAAATTTCTAGACAGATACCAGGTACCAAAGTTAAATCAGGATCAGGTTA  50
      ||| |||||||||||||||||||||||||||||||| || ||||||||| 
seq2  CAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAACCAAGATCAGGTTT  50

seq1  ATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGCAGCCATTAAT  100
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAAT  100

seq1  AGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTT  150
      ||||| ||||||||||||||||||||| || |||||||||||||||||||
seq2  AGTCT-CCAACCAAAAAAAGCCCAGGAACAAATGGGTTTAGTGCAGAGTT  149

seq1  CTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTCACAAACAATTCC  200
      |||| |||||||||| |||||||||||| ||||||||||||||| |||||
seq2  CTATTAGACCTTCAATGAAGATCTAATTACAGTTCTTCACAAACTATTCC  199

seq1  ACAAAATAGAAGCAGAAGGTACTCTACCCAATTCATTCTATGAAGCCACA  250
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  ACAAAATAGAAGCAGAAGGTACTCTACCTAATTTATTCTATGAAGCCACA  249

seq1  ATTACTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTT  300
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTACTATGATACCTAAACCACAGAAAGA-CCAACAAAGATAGAGAACTT  298

seq1  CAGACCAATTTCCCTTATGAATATCGATGATAAAATACTCAATAAAATTC  350
      |||||||||||||||||||||||||||||  |||||||| |||||| |||
seq2  CAGACCAATTTCCCTTATGAATATCGATGCAAAAATACTAAATAAAGTTC  348

seq1  TCGCTAACCAAATCCAAGAACACATCAAAACCATCATCCATCCTGACCAA  400
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  TCGCTAACCGAATCCAAGAACACATCAAAACAATCATCCATCCTGACCAA  398

seq1  GTAGGTTTCATTCCAGGGATGCAGGGATGGTTTAATATATGGAAATTCAT  450
      |||||||| ||  ||||||||||||||||||| ||||||||||||| |||
seq2  GTAGGTTTTATCGCAGGGATGCAGGGATGGTTCAATATATGGAAATCCAT  448

seq1  CAACGTAATCCACTATATAAACAAACTCAAAGACAAAAACCACATGATCA  500
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAACGTAATCCAGTATATAAACAAACTCAAAGACAAAAACCACATGATCA  498

seq1  TCTCGTTAGATGCGGAGAAAGCATTTGACAAAATCTAACACCCATTCATG  550
      |||||||||||||||  ||||||||  |||| ||| ||||||||||||||
seq2  TCTCGTTAGATGCGGGAAAAGCATTCAACAAGATCCAACACCCATTCATG  548

seq1  ATAAAAGCCTTGGAAAGATCAGGAATTC  578
      ||||||| ||||||| ||||||||||||
seq2  ATAAAAGTCTTGGAACGATCAGGAATTC  576

seq1: chr2_7655395_7655809
seq2: B6Ng01-048C21.g_65_479 (reverse)

seq1  CACACACACACACACACACACGCACACACACATACACTTGCATGCACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACGCACACACACATACACTTGCATGCACATG  50

seq1  CACACACACTTTAAAAAAAAAATTCCTGCTTGGTATTCTCACAAGTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACTTTAAAAAAAAAATTCCTGCTTGGTATTCTCACAAGTAAAA  100

seq1  TTCTGACTTTCTTTTTATCCGATGGGCATGTTTGGAGTAATTAGAACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTTTCTTTTTATCCGATGGGCATGTTTGGAGTAATTAGAACATC  150

seq1  TGCTCCCTGAAACTTTCACTATCAACTTCATAATAAGGCAATTTTTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCTGAAACTTTCACTATCAACTTCATAATAAGGCAATTTTTTTCA  200

seq1  GTCTAGTAGCTGATGGGTGAAAAGAGCAATACTTTCATAACATAACGACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTAGCTGATGGGTGAAAAGAGCAATACTTTCATAACATAACGACG  250

seq1  AGTACACTCTCCTTTCCTAATAAAACAGAGCACAAGCCATGCTATGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACTCTCCTTTCCTAATAAAACAGAGCACAAGCCATGCTATGAAAA  300

seq1  ACAGGACATGGGAAGGACACTGGTCCTCAACCAAAAACTCTAGGAAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACATGGGAAGGACACTGGTCCTCAACCAAAAACTCTAGGAAGATG  350

seq1  CCACAAGGTAGCCTTTCCAAATGAGAAGCTCTGGCTCTCAGATGAGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGGTAGCCTTTCCAAATGAGAAGCTCTGGCTCTCAGATGAGGTTT  400

seq1  TTCAGAAGAGAATTC  415
      |||||||||||||||
seq2  TTCAGAAGAGAATTC  415