BAC Information

Click to search

BAC

Clone NameB6Ng01-048F15
Chromosome2 (Build37)
Map Location 157,788,630 - 157,965,772
singlet/doubletdoublet
Overlap gene2610036D13Rik, 2610304G08Rik, Tgm2
Upstream geneNdrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat, Ctnnbl1, LOC100043681, Gm691
Downstream geneD630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048F15.bB6Ng01-048F15.g
ACCDH872937DH872938
length1,000441
definitionDH872937|Mus musculus domesticus DNA, BAC clone: B6Ng01-048F15, 5' end.DH872938|Mus musculus domesticus DNA, BAC clone: B6Ng01-048F15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,788,630 - 157,789,640)(157,965,326 - 157,965,772)
sequence
gaattcctctggactctcagttcactaattgttccttcaactgtgtctaa
ttgttgtgtgcttgcccacttagttcaacaatcttgtgttttgtcttttc
gtttctccttctttttcatgtagacaggtaatcacaactggtttgtttag
taacttctttttactggtcacttcttttacctttgctagggtcttaaatc
cgttctaaagtgactttcagaatgcttaatacgtatacttaccacaagta
gatttatcgtttgtgttgactttgttggttttccttttttttagatttat
ttatttatttatttatttatttatttatttagtgtatgtgtgtttgcgtg
catgagtgtgtgtgctgcagcatatatagaggtcagagacaccctgcagg
agtcttttctctccttctaccatgagagtctcagggactgaactctggtc
ccaggttagctgcaggcacctttacccatggagctccttgctcacctgga
tttccctcagtgctgggttttttctggcctttggaatcatgtttgcagct
tggttctgaagaatggttgtgttcatgttctttctctgaactccgataaa
gccggtccctcaagaccccagttccaagccaagtttcctcctaacagctc
agggttcttagtctttggtgggaatggcatgtctataggcctgtgactaa
gcctgggtggcttgcctcaggttgccattgttccctctggtgacctatac
tgtggtttccagccccgaggccaattttactccaatttgctctgtaagac
ttagactccttgccactgctctctgcctacagagtcacagcctggcctga
gctcacaagctccatttctatatattcagtttgttttattcaaaagaaaa
aatacttgttctgagtgtgatttttttttttatttagataaatatcacga
cagtggtggcgcatgccttatgttacagcacttgaaggcaaggccaggta

cagagctggctggctcctttccgaatgtcagctctggaagttaagggcgg
gtttgaatgcctgcaactcagcccctggcacccagacaggctctcgagcc
ctgtgtcatgcttattagctcacggttatatttggacccctggtgcagtg
aggctggcagacagggaggaggggtggagactgggagggaggccctcagt
gagcagggcccagtattgtcagccgtggatggcagagccacagggagggg
gtggagaaataaaaataaactgtcaggctgcctcccagctagccagaatg
ctcctctgtttcttcactctctgcccaaggctaaagagaccagccctgcc
ctccggtgattcacgcctgcctgcatgggccaggtcacctcttacctgga
agagagggctgtgtataccatgacataggatgtcatccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_157788630_157789640
seq2: B6Ng01-048F15.b_46_1045

seq1  GAATTCCTCTGGACTCTCAGTTCACTAATTGTTCCTTCAACTGTGTCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGGACTCTCAGTTCACTAATTGTTCCTTCAACTGTGTCTAA  50

seq1  TTGTTGTGTGCTTGCCCACTTAGTTCAACAATCTTGTGTTTTGTCTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTGTGCTTGCCCACTTAGTTCAACAATCTTGTGTTTTGTCTTTTC  100

seq1  GTTTCTCCTTCTTTTTCATGTAGACAGGTAATCACAACTGGTTTGTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCCTTCTTTTTCATGTAGACAGGTAATCACAACTGGTTTGTTTAG  150

seq1  TAACTTCTTTTTACTGGTCACTTCTTTTACCTTTGCTAGGGTCTTAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCTTTTTACTGGTCACTTCTTTTACCTTTGCTAGGGTCTTAAATC  200

seq1  CGTTCTAAAGTGACTTTCAGAATGCTTAATACGTATACTTACCACAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTAAAGTGACTTTCAGAATGCTTAATACGTATACTTACCACAAGTA  250

seq1  GATTTATCGTTTGTGTTGACTTTGTTGGTTTTCCTTTTTTTTAGATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATCGTTTGTGTTGACTTTGTTGGTTTTCCTTTTTTTTAGATTTAT  300

seq1  TTATTTATTTATTTATTTATTTATTTATTTAGTGTATGTGTGTTTGCGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTTATTTATTTATTTATTTAGTGTATGTGTGTTTGCGTG  350

seq1  CATGAGTGTGTGTGCTGCAGCATATATAGAGGTCAGAGACACCCTGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTGTGTGTGCTGCAGCATATATAGAGGTCAGAGACACCCTGCAGG  400

seq1  AGTCTTTTCTCTCCTTCTACCATGAGAGTCTCAGGGACTGAACTCTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTCTCTCCTTCTACCATGAGAGTCTCAGGGACTGAACTCTGGTC  450

seq1  CCAGGTTAGCTGCAGGCACCTTTACCCATGGAGCTCCTTGCTCACCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTAGCTGCAGGCACCTTTACCCATGGAGCTCCTTGCTCACCTGGA  500

seq1  TTTCCCTCAGTGCTGGGTTTTTTCTGGCCTTTGGAATCATGTTTGCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCAGTGCTGGGTTTTTTCTGGCCTTTGGAATCATGTTTGCAGCT  550

seq1  TGGTTCTGAAGAATGGTTGTGTTCATGTTCTTTCTCTGAACTCCGATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTGAAGAATGGTTGTGTTCATGTTCTTTCTCTGAACTCCGATAAA  600

seq1  GCCGGTCCCTCAAGACCCCAGTTCCAAGCCAAGTTTCCTCCTAACAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGTCCCTCAAGACCCCAGTTCCAAGCCAAGTTTCCTCCTAACAGCTC  650

seq1  AGGGTTCTTAGTCTTTGGTGGGAATGGCATGTCTATAGGCCTGTGACTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCTTAGTCTTTGGTGGGAATGGCATGTCTATAGGCCTGTGACTAA  700

seq1  GCCTGGGTGGCTTGCCTCAGGTTGCCATTGTTCCCTCTGGTGACCTATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGTGGCTTGCCTCAGGTTGCCATTGTTCCCTCTGGTGACCTATAC  750

seq1  TGTGGTTTCCAGCCCCGAGGCCAATTTTACTCCAATTTGCTCTGTAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTCCAGCCCCGAGGCCAATTTTACTCCAATTTGCTCTGTAAGAC  800

seq1  TTAGACTCCTTGCCACTGCTCTCTGCCTACAGAGTCACAGCCTGGCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTCCTTGCCACTGCTCTCTGCCTACAGAGTCACAGCCTGGCCTGA  850

seq1  GCTCACAAGCTCCATTTCTATAATATTTCAGTTTGTTTTTATTCCAAAGG  900
      ||||||||||||||||||||| ||| ||||||||| |||||||| |||| 
seq2  GCTCACAAGCTCCATTTCTAT-ATA-TTCAGTTTG-TTTTATTCAAAAG-  896

seq1  AAAAAAATACTTGTTTCTGAGTGTGATTTTTTTTTTTAATTTAAGATAAA  950
       |||||||||||| ||||||||||||||||||||||||  || |||||||
seq2  -AAAAAATACTTG-TTCTGAGTGTGATTTTTTTTTTTA--TTTAGATAAA  942

seq1  ATTATCAGGACAGTGGTGGCGCATGCCTTTAGTTACAGCACTTGGAAGGC  1000
        ||||| |||||||||||||||||||||  |||||||||||| ||||||
seq2  --TATCACGACAGTGGTGGCGCATGCCTTATGTTACAGCACTT-GAAGGC  989

seq1  AGAGGCAGGTA  1011
      |  | ||||||
seq2  AAGGCCAGGTA  1000

seq1: chr2_157965326_157965772
seq2: B6Ng01-048F15.g_65_511 (reverse)

seq1  GGTGGATGACATCCTATGTCATGGTCTACACAGCCCTCTCTTCCAGGTAA  50
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGTGGATGACATCCTATGTCATGGTATACACAGCCCTCTCTTCCAGGTAA  50

seq1  GAGGTGGCCTGGCCCATGCAGGCAGGCGTGAATCACCGGAGGGCAGGGCT  100
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGACCTGGCCCATGCAGGCAGGCGTGAATCACCGGAGGGCAGGGCT  100

seq1  GGTCTCTTTAGCCTTGGGCAGAGAGTGAAGAAACAGAGGAGCATTCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTTTAGCCTTGGGCAGAGAGTGAAGAAACAGAGGAGCATTCTGGC  150

seq1  TAGCTGGGAGGCAGCCTGACAGTTTATTTTTATTTCTCCACCCCCTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGGAGGCAGCCTGACAGTTTATTTTTATTTCTCCACCCCCTCCCT  200

seq1  GTGGCTCTGCCATCCACGGCTGACAATACTGGGCCCTGCTCACTGAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCTGCCATCCACGGCTGACAATACTGGGCCCTGCTCACTGAGGGC  250

seq1  CTCCCTCCCAGTCTCCACCCCTCCTCCCTGTCTGCCAGCCTCACTGCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCAGTCTCCACCCCTCCTCCCTGTCTGCCAGCCTCACTGCACC  300

seq1  AGGGGTCCAAATATAACCGTGAGCTAATAAGCATGACACAGGGCTCGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCCAAATATAACCGTGAGCTAATAAGCATGACACAGGGCTCGAGA  350

seq1  GCCTGTCTGGGTGCCAGGGGCTGAGTTGCAGGCATTCAAACCCGCCCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCTGGGTGCCAGGGGCTGAGTTGCAGGCATTCAAACCCGCCCTTA  400

seq1  ACTTCCAGAGCTGACATTCGGAAAGGAGCCAGCCAGCTCTGGAATTC  447
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAGAGCTGACATTCGGAAAGGAGCCAGCCAGCTCTGGAATTC  447