BAC Information

Click to search

BAC

Clone NameB6Ng01-048H19
Chromosome2 (Build37)
Map Location 71,636,145 - 71,777,722
singlet/doubletdoublet
Overlap geneItga6, Pdk1
Upstream geneTlk1, Mettl8, 4833418A01Rik, Cybrd1, Dync1i2, Slc25a12, LOC667528, Hat1, LOC100040177, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2, Gm1631
Downstream geneRapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048H19.bB6Ng01-048H19.g
ACCDH873030DH873031
length1,001895
definitionDH873030|Mus musculus domesticus DNA, BAC clone: B6Ng01-048H19, 5' end.DH873031|Mus musculus domesticus DNA, BAC clone: B6Ng01-048H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,776,722 - 71,777,722)(71,636,145 - 71,637,045)
sequence
gaattccaagcccattgtctgctcaaggactttctaggacgttggaacac
tggtgaaggcttagctatgtcagaattcaatcttaaaaggcattataata
agataatactaaaagagagcatgtggatccatgcaccagactaacgcgag
aatagaatatgagtatatgggttaaagagaatgccagactccaggaggtg
agtttccgtgaaactctctgcctctagagtggcttccaggcctcttggcc
tgtcaagctgactcaaccagagtgcatggcagattataaaatgcagaaag
gtgcttttctattgtagtggacagacaaaggcagggagaaagggaaagca
acaacatctttgaacactaaggaatcaacttcccaaacttcctttcctgc
ctaaccagtaaacctgtggctcactgtggctgccaaaaacaacactcttc
accatttttaaatcaaagcaaatcgtggtgacatcaccaaaaccttttca
tcacatgaccagaaatcccagttccctaatagttgtgcaaatgggcttga
cattcagtctgagactaagctttgaaaccagaaggtctgccatccagata
tcgctagcgatttgtagctaaaaatacagtcaccaaacacagaaagggga
gctatgtcttagcaggagatgacactctgatgtatgatactaattttaaa
ctcttaagtttgaaagggcagggcatgaaattggagcctcgctgattcac
agacaaataaagaaccagccgtctgggaaggccgggtgggagtttgtctt
cctctctgcagactcactcagcactccaaaaaatgcttttctctttcaga
tcaaagatgctgtttttgtcaagactccccaagactttctgtagaaacaa
aggaaaggagcagatgccaggcttttcttgttctccttgtcaattgctag
ttgtgggagtaaatgtaactatgttactttctgttctctgtcattgctag
t
gaattcctaccagactcatttgcggtgcagggagaacttgtcctgaatgg
aggtaggctgtagccagagagtctggcactgtacagtctgcatgattcct
tcaagctgaggtggtacagtggtgggcacataaccatgcattgtggaagt
gagtatggtactcttttgtggccaggccttgcttcctgagctacatggcc
ccatttgtaaccaatttagccaacacttattgctgcttaggacactgaaa
acctcccctgccccagttggggggactgaattctgttcttttaaagtggc
ttgtgaccttgctgagttgtcagagaggtggaaaatgaggacaaatctgc
actttggttctgttttgctatcattttcttttcttttttttcaagacagt
gtcctactgtgtattcctgtcagtcctggaactcgctctgtagagcaggt
tggcctcgaactcggagatctgcttgcctctgcctcttgaatgctaggat
taaaggcatggccaccacagccagccacctcctgtcattttcaatctctt
tattgaaataatggcatgggcctttagtaatccaacaagagataatatct
ttgaattacataaaaatgaataatcaggatatcggcatccgttctcctgg
gtatgacacaaaatatggaacatcttcctgaagtggcgtggtggcttgtg
gttttaagttttaaaccctgtatcattttaaaccctgtgcaggaaggact
gtgcgaatttctaaatgtgaaacatgaagcttttagtgacatttcctgac
actcactctctgctgttatccgcacatgttcacctatcctcatcactggg
ccatgtgcattttatttttaatttttagatttatttatttattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_71776722_71777722
seq2: B6Ng01-048H19.b_45_1045 (reverse)

seq1  ACTAGCAATTGGACAGGAGAACAGAAAGTAACATAGTAACATTTACTCCA  50
      |||||||||  |||| ||||||||||||||||||||| ||||||||||| 
seq2  ACTAGCAAT--GACA-GAGAACAGAAAGTAACATAGTTACATTTACTCCC  47

seq1  CCAACTAGCAATTGGACAGGAGAAC-AGAAA--GCTGGCATCTTGCTCCT  97
       |||||||||||||   |||||||| |||||   |||||||| |||||||
seq2  ACAACTAGCAATTGACAAGGAGAACAAGAAAAGCCTGGCATC-TGCTCCT  96

seq1  TT-CTTTGTTTCTACAGAAAGTCTT-GGGAGTCTTGACAAAAACAGCATC  145
      || |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCCTTTGTTTCTACAGAAAGTCTTGGGGAGTCTTGACAAAAACAGCATC  146

seq1  TTTGATCTTGAAAGAGAAAAGCATTTTTTGGAGTGCTGAGTGAGTCTGCA  195
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATC-TGAAAGAGAAAAGCATTTTTTGGAGTGCTGAGTGAGTCTGCA  195

seq1  GAGAGGAAGACAAACTCCCACCCGGCCTTCCCAGACGGCTGGTTCCTTAT  245
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAGAGGAAGACAAACTCCCACCCGGCCTTCCCAGACGGCTGGTTCTTTAT  245

seq1  TTGTCTGTGAATCAGCGAGGCTCCAATTTCATGCCCTGCCCTTTCAAACT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTGAATCAGCGAGGCTCCAATTTCATGCCCTGCCCTTTCAAACT  295

seq1  TAAGAGTTTAAAATTAGTATCATACATCAGAGTGTCATCTCCTGCTAAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTTTAAAATTAGTATCATACATCAGAGTGTCATCTCCTGCTAAGA  345

seq1  CATAGCTCCCCTTTCTGTGTTTGGTGACTGTATTTTTAGCTACAAATCGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTCCCCTTTCTGTGTTTGGTGACTGTATTTTTAGCTACAAATCGC  395

seq1  TAGCGATATCTGGATGGCAGACCTTCTGGTTTCAAAGCTTAGTCTCAGAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGATATCTGGATGGCAGACCTTCTGGTTTCAAAGCTTAGTCTCAGAC  445

seq1  TGAATGTCAAGCCCATTTGCACAACTATTAGGGAACTGGGATTTCTGGTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTCAAGCCCATTTGCACAACTATTAGGGAACTGGGATTTCTGGTC  495

seq1  ATGTGATGAAAAGGTTTTGGTGATGTCACCACGATTTGCTTTGATTTAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATGAAAAGGTTTTGGTGATGTCACCACGATTTGCTTTGATTTAAA  545

seq1  AATGGTGAAGAGTGTTGTTTTTGGCAGCCACAGTGAGCCACAGGTTTACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGAAGAGTGTTGTTTTTGGCAGCCACAGTGAGCCACAGGTTTACT  595

seq1  GGTTAGGCAGGAAAGGAAGTTTGGGAAGTTGATTCCTTAGTGTTCAAAGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGCAGGAAAGGAAGTTTGGGAAGTTGATTCCTTAGTGTTCAAAGA  645

seq1  TGTTGTTGCTTTCCCTTTCTCCCTGCCTTTGTCTGTCCACTACAATAGAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGCTTTCCCTTTCTCCCTGCCTTTGTCTGTCCACTACAATAGAA  695

seq1  AAGCACCTTTCTGCATTTTATAATCTGCCATGCACTCTGGTTGAGTCAGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCTTTCTGCATTTTATAATCTGCCATGCACTCTGGTTGAGTCAGC  745

seq1  TTGACAGGCCAAGAGGCCTGGAAGCCACTCTAGAGGCAGAGAGTTTCACG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGGCCAAGAGGCCTGGAAGCCACTCTAGAGGCAGAGAGTTTCACG  795

seq1  GAAACTCACCTCCTGGAGTCTGGCATTCTCTTTAACCCATATACTCATAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCACCTCCTGGAGTCTGGCATTCTCTTTAACCCATATACTCATAT  845

seq1  TCTATTCTCGCGTTAGTCTGGTGCATGGATCCACATGCTCTCTTTTAGTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCTCGCGTTAGTCTGGTGCATGGATCCACATGCTCTCTTTTAGTA  895

seq1  TTATCTTATTATAATGCCTTTTAAGATTGAATTCTGACATAGCTAAGCCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTATTATAATGCCTTTTAAGATTGAATTCTGACATAGCTAAGCCT  945

seq1  TCACCAGTGTTCCAACGTCCTAGAAAGTCCTTGAGCAGACAATGGGCTTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGTGTTCCAACGTCCTAGAAAGTCCTTGAGCAGACAATGGGCTTG  995

seq1  GAATTC  1001
      ||||||
seq2  GAATTC  1001

seq1: chr2_71636145_71637045
seq2: B6Ng01-048H19.g_66_960

seq1  GAATTCCTACCAGACTCATTTGCGGTGCAGGGAGAACTTGTCCTGAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACCAGACTCATTTGCGGTGCAGGGAGAACTTGTCCTGAATGG  50

seq1  AGGTAGGCTGTAGCCAGAGAGTCTGGCACTGTACAGTCTGCATGATTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGCTGTAGCCAGAGAGTCTGGCACTGTACAGTCTGCATGATTCCT  100

seq1  TCAAGCTGAGGTGGTACAGTGGTGGGCACATAACCATGCATTGTGGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTGAGGTGGTACAGTGGTGGGCACATAACCATGCATTGTGGAAGT  150

seq1  GAGTATGGTACTCTTTTGTGGCCAGGCCTTGCTTCCTGAGCTACATGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGGTACTCTTTTGTGGCCAGGCCTTGCTTCCTGAGCTACATGGCC  200

seq1  CCATTTGTAACCAATTTAGCCAACACTTATTGCTGCTTAGGACACTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTAACCAATTTAGCCAACACTTATTGCTGCTTAGGACACTGAAA  250

seq1  ACCTCCCCTGCCCCAGTTGGGGGGACTGAATTCTGTTCTTTTAAAGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCCTGCCCCAGTTGGGGGGACTGAATTCTGTTCTTTTAAAGTGGC  300

seq1  TTGTGACCTTGCTGAGTTGTCAGAGAGGTGGAAAATGAGGACAAATCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACCTTGCTGAGTTGTCAGAGAGGTGGAAAATGAGGACAAATCTGC  350

seq1  ACTTTGGTTCTGTTTTGCTATCATTTTCTTTTCTTTTTTTTCAAGACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGTTCTGTTTTGCTATCATTTTCTTTTCTTTTTTTTCAAGACAGT  400

seq1  GTCCTACTGTGTATTCCTGTCAGTCCTGGAACTCGCTCTGTAGAGCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTACTGTGTATTCCTGTCAGTCCTGGAACTCGCTCTGTAGAGCAGGT  450

seq1  TGGCCTCGAACTCGGAGATCTGCTTGCCTCTGCCTCTTGAATGCTAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCGAACTCGGAGATCTGCTTGCCTCTGCCTCTTGAATGCTAGGAT  500

seq1  TAAAGGCATGGCCACCACAGCCAGCCACCTCCTGTCATTTTCAATCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCATGGCCACCACAGCCAGCCACCTCCTGTCATTTTCAATCTCTT  550

seq1  TATTGAAATAATGGCATGGGCCTTTAGTAATCCAACAAGAGATAATATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAATAATGGCATGGGCCTTTAGTAATCCAACAAGAGATAATATCT  600

seq1  TTGAATTACATAAAAATGAATAATCAGGATATCGGCATCCGTTCTCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTACATAAAAATGAATAATCAGGATATCGGCATCCGTTCTCCTGG  650

seq1  GTATGACACAAAATATGGAACATCTTCCTGAAGTGGCGTGGTGGCTTGTT  700
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTATGACACAAAATATGGAACATCTTCCTGAAGTGGCGTGGTGGCTTG-T  699

seq1  GGTTTTAAGTTTTTAAACCCTGTATCATTTTAAACCCTGTGCAGGAAGGA  750
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAAG-TTTTAAACCCTGTATCATTTTAAACCCTGTGCAGGAAGGA  748

seq1  CTGTGCGAATTTCTAAATGTGAAACATGAAGCTTTTAGTGACATTTCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCGAATTTCTAAATGTGAAACATGAAGCTTTTAGTGACATTTCCTG  798

seq1  ACACTCACTCTCTGCTGTTATCCGCACATGTTCACCTATCCTCATCACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACTCTCTGCTGTTATCCGCACATGTTCACCTATCCTCATCACTG  848

seq1  GGCCATTGTGCATTTTATTTTTTAATTTTTAAAGATTTATTTATTTATTA  900
      ||||| ||||||||||| ||||||||||||  ||||||||||||||||||
seq2  GGCCA-TGTGCATTTTA-TTTTTAATTTTT--AGATTTATTTATTTATTA  894

seq1  A  901
      |
seq2  A  895