BAC Information

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BAC

Clone NameB6Ng01-048J21
Chromosome2 (Build37)2 (Build37)
Map Location 142,776,687 - 142,777,69840,299,638 - 40,300,576
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048J21.bB6Ng01-048J21.g
ACCDH873123DH873124
length914937
definitionDH873123|Mus musculus domesticus DNA, BAC clone: B6Ng01-048J21, 5' end.DH873124|Mus musculus domesticus DNA, BAC clone: B6Ng01-048J21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,687 - 142,777,698)(40,299,638 - 40,300,576)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagcctttgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcagttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcaggacttgagtttttatcataca
gatctttcacttcc
gaattcaatgtgaaccaatcttagaaagctaaaattcaaacacgtgactc
atctatatcattttttttggtatataaccaaaggcatcttgaccatgttt
cttggtttacttataaggaatggaaacagccttaaacttataaatgcata
atgaaagttgaccataaaacactattcagttccaaagaaaaatgaaatca
tcaaatttctaggtaactgggtagaactagaaaggattatatttatgaga
taacccagaccaagaaagacaagtgtcccacggtccctatggacttccta
gagaactcagacatgtttactttttgtgagctggtttagtttaccttggt
taaacaaaaacattgattttcactattacaaaaagtcatttatcatcagc
atcatggaaaaattagaactcaatctctatagcaatctctagttaagctt
aggaaataactgtaaagagaatgggtactgcatggctaatacagctagat
caaaatacttattttataatatatattaaatattgattcagccaggcagt
ggtggcacacgactttaatcacaccacttgggggggcagaggcaggcgga
tttctgagttcgaggccaacctggtctacaaagttagttccaggacagcc
aaagctatacagagaaaccctgtctctaaacaaacaaacaaacaaacaaa
aatatattgattcatatgttcagttagaattctcacataattgcttgaaa
tcattgctaggaaagacatgttaaatgtcttcacaaaaataataaatgtg
atgttgaaattttctgtcaatgattatttaacttcagttctgagaaagag
aagttcttttcaatgtagagttcacagtagacacatcatatacttagcat
gctaaaatgcattttttctgacatttcactgctagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776687_142777698
seq2: B6Ng01-048J21.b_43_594 (reverse)

seq1  GACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGG  50

seq1  TCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACA  100
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  TCACTTGATCTTCGACAAGGGAGCCAAAACCATCCAGTGGAAGAAAGACA  100

seq1  GCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGA  150

seq1  ATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTG  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTG  200

seq1  GATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGA  250

seq1  AAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAAC  300
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAAC  300

seq1  AGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCT  350
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCAAAGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCT  350

seq1  AATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAA  400
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  AATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAA  400

seq1  AAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGAT  450
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGAT  450

seq1  AGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAG  500

seq1  AAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTGG  550
      |||||||||||||||| ||||||||||||||||| ||            |
seq2  AAAATCAAATAACCCCCTTAAAAAATGGGGCTCAGAA----------CTG  540

seq1  AAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATC  600
      || |||||    |||                                   
seq2  AACAAAGA----ATTC----------------------------------  552

seq1  ATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCA  650
                                                        
seq2  --------------------------------------------------  552

seq1  AATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTT  700
                                                        
seq2  --------------------------------------------------  552

seq1  ATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAA  750
                                                        
seq2  --------------------------------------------------  552

seq1  ATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACA  800
                                                        
seq2  --------------------------------------------------  552

seq1  AATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTC  850
                                                        
seq2  --------------------------------------------------  552

seq1  TATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCC  900
                                                        
seq2  --------------------------------------------------  552

seq1  TAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGG  950
                                                        
seq2  --------------------------------------------------  552

seq1  TGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTG  1000
                                                        
seq2  --------------------------------------------------  552

seq1  AACAAAGAATTC  1012
                  
seq2  ------------  552

seq1: chr2_40299638_40300576
seq2: B6Ng01-048J21.g_66_991 (reverse)

seq1  AAATGTCAGGAAAAAAATGCCATTTTAAGCAATTGCCTAAGTAATAATGA  50
      |||||||||  |||||||| |||||| ||||  || |||||||   ||||
seq2  AAATGTCAG--AAAAAATG-CATTTT-AGCA--TG-CTAAGTA--TATGA  41

seq1  TGTGTTCTTACTGTGAACTCTACATTGAAAAGAACTTCTCTTTCTTCAGA  100
      |||||   |||||||||||||||||||||||||||||||||||| |||||
seq2  TGTGT--CTACTGTGAACTCTACATTGAAAAGAACTTCTCTTTC-TCAGA  88

seq1  ACTGAAGTTAAATAATCATTGACAGAAAATTTCAACATCACATTTATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTGAAGTTAAATAATCATTGACAGAAAATTTCAACATCACATTTATTA-  137

seq1  TTTTTGTGAAGACATTTAACATGTCTTTCCTAGCAATGATTTCAAGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGAAGACATTTAACATGTCTTTCCTAGCAATGATTTCAAGCAAT  187

seq1  TATGTGAGAATTCTAACTGAACATATGAATCAATATATTTTTGTTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGAATTCTAACTGAACATATGAATCAATATATTTTTGTTTGTTT  237

seq1  GTTTGTTTGTTTAGAGACAGGGTTTCTCTGTATAGCCTTGGCTGTCCTGG  300
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTTTGTTTGTTTAGAGACAGGGTTTCTCTGTATAGCTTTGGCTGTCCTGG  287

seq1  AACTAACTTTGTAGACCAGGTTGGCCTCGAACTCAGAAATCCGCCTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACTTTGTAGACCAGGTTGGCCTCGAACTCAGAAATCCGCCTGCCT  337

seq1  CTGCCCCCCCAAGTGGTGTGATTAAAGTCGTGTGCCACCACTGCCTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCCCCAAGTGGTGTGATTAAAGTCGTGTGCCACCACTGCCTGGCT  387

seq1  GAATCAATATTTAATATATATTATAAAATAAGTATTTTGATCTAGCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAATATTTAATATATATTATAAAATAAGTATTTTGATCTAGCTGTA  437

seq1  TTAGCCATGCAGTACCCATTCTCTTTACAGTTATTTCCTAAGCTTAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCATGCAGTACCCATTCTCTTTACAGTTATTTCCTAAGCTTAACTA  487

seq1  GAGATTGCTATAGAGATTGAGTTCTAATTTTTCCATGATGCTGATGATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGCTATAGAGATTGAGTTCTAATTTTTCCATGATGCTGATGATAA  537

seq1  ATGACTTTTTGTAATAGTGAAAATCAATGTTTTTGTTTAACCAAGGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTTTTGTAATAGTGAAAATCAATGTTTTTGTTTAACCAAGGTAAA  587

seq1  CTAAACCAGCTCACAAAAAGTAAACATGTCTGAGTTCTCTAGGAAGTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCAGCTCACAAAAAGTAAACATGTCTGAGTTCTCTAGGAAGTCCA  637

seq1  TAGGGACCGTGGGACACTTGTCTTTCTTGGTCTGGGTTATCTCATAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACCGTGGGACACTTGTCTTTCTTGGTCTGGGTTATCTCATAAATA  687

seq1  TAATCCTTTCTAGTTCTACCCAGTTACCTAGAAATTTGATGATTTCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTTTCTAGTTCTACCCAGTTACCTAGAAATTTGATGATTTCATTT  737

seq1  TTCTTTGGAACTGAATAGTGTTTTATGGTCAACTTTCATTATGCATTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGAACTGAATAGTGTTTTATGGTCAACTTTCATTATGCATTTAT  787

seq1  AAGTTTAAGGCTGTTTCCATTCCTTATAAGTAAACCAAGAAACATGGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAAGGCTGTTTCCATTCCTTATAAGTAAACCAAGAAACATGGTCA  837

seq1  AGATGCCTTTGGTTATATACCAAAAAAAATGATATAGATGAGTCACGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCTTTGGTTATATACCAAAAAAAATGATATAGATGAGTCACGTGT  887

seq1  TTGAATTTTAGCTTTCTAAGATTGGTTCACATTGAATTC  939
      |||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTTAGCTTTCTAAGATTGGTTCACATTGAATTC  926