BAC Information

Click to search

BAC

Clone NameB6Ng01-048K13
Chromosome2 (Build37)1 (Build37)
Map Location 48,403,652 - 48,404,435164,708,000 - 164,708,083
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC383691, LOC100041457
Downstream geneLOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048K13.bB6Ng01-048K13.g
ACCDH873154DH873155
length78384
definitionDH873154|Mus musculus domesticus DNA, BAC clone: B6Ng01-048K13, 5' end.DH873155|Mus musculus domesticus DNA, BAC clone: B6Ng01-048K13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,403,652 - 48,404,435)(164,708,000 - 164,708,083)
sequence
gaattcatccaggacatcatcttatctgctcccctcaaaatgattaattg
tctatttttttcaagaactacatgtatcagtttctgaacacaatttctgg
atattcaaagatgagttatttggaattttgattcttgttttgaataaatt
atattttccttgactctaaagtatctagtaatgagaggtttataaccaaa
gtgatgatatgcctacaggtaaaatacatagatataatatgtaggcagag
ataaaaaatcaaggccatcatatcactctgcaaaagtaactcctatacct
gtaattagtgtgacatcatttttcatatatacatacatgtctgaaagaat
ccactcaaataaaattcatcagaaatttccaattcaaagctagatgttgt
aacacagcttatcattttggatgctggagtagggggttctcaaacttgaa
gctagcctggactacacagtacacccaacatcaccctgggctgtaagaat
aagatgctgtctcaaaaggcacatgaaacaaagactccctagttcatata
ccacacatagtcacacagctaacacccaattgaatgtcagaaaatgaaaa
taggagagtcacttaaatgtgcatagatctttacagtaacctggacataa
acaacactcactaacctttatgacatatgttttggaaagaagatatgttt
ggccaatacaagattttcttggaaatataggctaaagatacacttgggtt
gtttcttgggttggtgttgttgttggggttttt
ttctggaagtaaggaagcaaagagggaaggaaggaaggaaggaaggaagg
aaggaaggaaggaaggaaggaaggaagggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_48403652_48404435
seq2: B6Ng01-048K13.b_44_826

seq1  GAATTCATCCAGGACATCATCTTATCTGCTCCCCTCAAAATGATTAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCAGGACATCATCTTATCTGCTCCCCTCAAAATGATTAATTG  50

seq1  TCTATTTTTTTCAAGAACTACATGTATCAGTTTCTGAACACAATTTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTTTTCAAGAACTACATGTATCAGTTTCTGAACACAATTTCTGG  100

seq1  ATATTCAAAGATGAGTTATTTGGAATTTTGATTCTTGTTTTGAATAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAAAGATGAGTTATTTGGAATTTTGATTCTTGTTTTGAATAAATT  150

seq1  ATATTTTCCTTGACTCTAAAGTATCTAGTAATGAGAGGTTTATAACCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCCTTGACTCTAAAGTATCTAGTAATGAGAGGTTTATAACCAAA  200

seq1  GTGATGATATGCCTACAGGTAAAATACATAGATATAATATGTAGGCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGATATGCCTACAGGTAAAATACATAGATATAATATGTAGGCAGAG  250

seq1  ATAAAAAATCAAGGCCATCATATCACTCTGCAAAAGTAACTCCTATACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATCAAGGCCATCATATCACTCTGCAAAAGTAACTCCTATACCT  300

seq1  GTAATTAGTGTGACATCATTTTTCATATATACATACATGTCTGAAAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAGTGTGACATCATTTTTCATATATACATACATGTCTGAAAGAAT  350

seq1  CCACTCAAATAAAATTCATCAGAAATTTCCAATTCAAAGCTAGATGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAAATAAAATTCATCAGAAATTTCCAATTCAAAGCTAGATGTTGT  400

seq1  AACACAGCTTATCATTTTGGATGCTGGAGTAGGGGGTTCTCAAACTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGCTTATCATTTTGGATGCTGGAGTAGGGGGTTCTCAAACTTGAA  450

seq1  GCTAGCCTGGACTACACAGTACACCCAACATCACCCTGGGCTGTAAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCTGGACTACACAGTACACCCAACATCACCCTGGGCTGTAAGAAT  500

seq1  AAGATGCTGTCTCAAAAGGCACATGAAACAAAGACTCCCTAGTTCATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCTGTCTCAAAAGGCACATGAAACAAAGACTCCCTAGTTCATATA  550

seq1  CCACACATAGTCACACAGCTAACACCCAATTGAATGTCAGAAAATGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACATAGTCACACAGCTAACACCCAATTGAATGTCAGAAAATGAAAA  600

seq1  TAGGAGAGTCACTTAAATGTGCATAGATCTTTACAGTAACCTGGACATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGTCACTTAAATGTGCATAGATCTTTACAGTAACCTGGACATAA  650

seq1  ACAACACTCACTAACCTTTATGACATATGTTTTGGAAAGAAGATATGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACTCACTAACCTTTATGACATATGTTTTGGAAAGAAGATATGTTT  700

seq1  GGCCAATACAAGATTTTCTTGGAAATATAGGCTAAAGATACACTTGGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAATACAAGATTTTCTTGGAAATATAGGCTAAAGATACACTTGGGTT  750

seq1  GTTTCTTTGGTTGGTTGTTGTTGTTGGGGTTTTT  784
      ||||||| |||||| |||||||||||||||||||
seq2  GTTTCTTGGGTTGG-TGTTGTTGTTGGGGTTTTT  783

seq1: chr1_164708000_164708083
seq2: B6Ng01-048K13.g_83_157 (reverse)

seq1  TCCCTCCCTTCCTTCCTTTGTTTCTTTGTTCCTTCTTTTTCTTCCTTCCT  50
      ||||||||||||||||    || |||  |||||||     ||||||||||
seq2  TCCCTCCCTTCCTTCC----TTCCTTCCTTCCTTC-----CTTCCTTCCT  41

seq1  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTA  84
      ||||||||||||||||||| || || ||||||||
seq2  TCCTTCCTTCCTTCCTTCCCTCTTTGCTTCCTTA  75