BAC Information

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BAC

Clone NameB6Ng01-049H22
Chromosome2 (Build37)
Map Location 122,039,767 - 122,167,945
singlet/doubletdoublet
Overlap geneLOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1
Upstream geneTrp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik
Downstream geneShf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049H22.bB6Ng01-049H22.g
ACCDH873739DH873740
length675646
definitionDH873739|Mus musculus domesticus DNA, BAC clone: B6Ng01-049H22, 5' end.DH873740|Mus musculus domesticus DNA, BAC clone: B6Ng01-049H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,167,271 - 122,167,945)(122,039,767 - 122,040,449)
sequence
gaattccttccccagtaaagagttccaaatttttaaagctctccttcatg
gtggggcagttcagtttctgagttgccagcttagacattctttctcaagg
tctgctctatgctggggtcttttacttataactttcctttctgcccagag
ccaagtgccttcctccaccccctgtgataagtgataagatagttgctatg
ttcccgatctccctccccacatataaaaggttcccaatctgccaggctag
agctgcccaacaatccagtgttgtctacaatagcaatgaatcaggaagta
gtcttggacttagggtatcaagctagccactctacaggatcttccctcta
gttttatcaccaggaaacaagaaacagcattttcgtagcagaagcaaagg
gcagaaggctagggatccacacatttttgaataggtaggaaattagtggg
aagggaggaaattagttagccacagctcccagaggagggagaggttcttt
ggaaatagacatcagcagttctaggaaatatcctaagccaagccagatag
ttatttcagaatcaggatgtgctgagccacaggcaaattgtgtgtgtgtg
tgtctgtgtgtctgtgtgtctgtgtcccagctattagtgaagacagagct
gcatctgggaggaggaggggtgggg
gaattctccgcagagcccccaacacgctgccatctgtcggtggcagtaat
atcttttcaaataaactacttatttttttttccagatttagtgtaatatt
ttacaacagcagaaaacaaacccaagtattaaacactaacaacacactac
aacccagggaagaggacatgcatgcagaggctacaggtataagctaagtc
tttacagttgactgctgaactggctatgacgcccgttgtgctggtgacag
gactagcaactattgttatctggagacgtcatcctcctgccccaggacct
acttgcagcacaacacataggatgcttttttatcttcacaaaagaataag
agttcactctcagtgatcagtcatcacagcgagcagaggtggcctcgctg
gcttttttcaactgcttgtacttaagcatcaactacttacactatccctt
aagttctggtgagaaaggcaccttcaaagcagagatgtgaattccatcag
tctcagcgtcagcggagctctgctgatacccacagaatgagtgacgccac
agtagtcaacttagagatctgccttatcttcgagctctagtcagactgtt
ctagaacacttgggacagcagttgcctcagtgggggtggaatgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_122167271_122167945
seq2: B6Ng01-049H22.b_47_721 (reverse)

seq1  CCCCACCCCTCCTCCTCCCAGATGCAGCTCTGTCTTCACTAATAGCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCTCCTCCTCCCAGATGCAGCTCTGTCTTCACTAATAGCTGGG  50

seq1  ACACAGACACACAGACACACAGACACACACACACACAATTTGCCTGTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACACACAGACACACAGACACACACACACACAATTTGCCTGTGGC  100

seq1  TCAGCACATCCTGATTCTGAAATAACTATCTGGCTTGGCTTAGGATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACATCCTGATTCTGAAATAACTATCTGGCTTGGCTTAGGATATTT  150

seq1  CCTAGAACTGCTGATGTCTATTTCCAAAGAACCTCTCCCTCCTCTGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAACTGCTGATGTCTATTTCCAAAGAACCTCTCCCTCCTCTGGGAG  200

seq1  CTGTGGCTAACTAATTTCCTCCCTTCCCACTAATTTCCTACCTATTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTAACTAATTTCCTCCCTTCCCACTAATTTCCTACCTATTCAAA  250

seq1  AATGTGTGGATCCCTAGCCTTCTGCCCTTTGCTTCTGCTACGAAAATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGGATCCCTAGCCTTCTGCCCTTTGCTTCTGCTACGAAAATGCT  300

seq1  GTTTCTTGTTTCCTGGTGATAAAACTAGAGGGAAGATCCTGTAGAGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTGTTTCCTGGTGATAAAACTAGAGGGAAGATCCTGTAGAGTGGC  350

seq1  TAGCTTGATACCCTAAGTCCAAGACTACTTCCTGATTCATTGCTATTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGATACCCTAAGTCCAAGACTACTTCCTGATTCATTGCTATTGTA  400

seq1  GACAACACTGGATTGTTGGGCAGCTCTAGCCTGGCAGATTGGGAACCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACACTGGATTGTTGGGCAGCTCTAGCCTGGCAGATTGGGAACCTTT  450

seq1  TATATGTGGGGAGGGAGATCGGGAACATAGCAACTATCTTATCACTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGGGGAGGGAGATCGGGAACATAGCAACTATCTTATCACTTATC  500

seq1  ACAGGGGGTGGAGGAAGGCACTTGGCTCTGGGCAGAAAGGAAAGTTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGGTGGAGGAAGGCACTTGGCTCTGGGCAGAAAGGAAAGTTATAA  550

seq1  GTAAAAGACCCCAGCATAGAGCAGACCTTGAGAAAGAATGTCTAAGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGACCCCAGCATAGAGCAGACCTTGAGAAAGAATGTCTAAGCTGG  600

seq1  CAACTCAGAAACTGAACTGCCCCACCATGAAGGAGAGCTTTAAAAATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAGAAACTGAACTGCCCCACCATGAAGGAGAGCTTTAAAAATTTG  650

seq1  GAACTCTTTACTGGGGAAGGAATTC  675
      |||||||||||||||||||||||||
seq2  GAACTCTTTACTGGGGAAGGAATTC  675

seq1: chr2_122039767_122040449
seq2: B6Ng01-049H22.g_67_712

seq1  GAATTCTCCGCAGAGCCCCCAACACGCTGCCATCTGTCGGTGGCAGTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGCAGAGCCCCCAACACGCTGCCATCTGTCGGTGGCAGTAAT  50

seq1  ATCTTTTCAAATAAACTACTTATTTTTTTTTCCAGATTTAGTGTAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCAAATAAACTACTTATTTTTTTTTCCAGATTTAGTGTAATATT  100

seq1  TTACAACAGCAGAAAACAAACCCAAGTATTAAACACTAACAACACACTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACAGCAGAAAACAAACCCAAGTATTAAACACTAACAACACACTAC  150

seq1  AACCCAGGGAAGAGGACATGCATGCAGAGGCTACAGGTATAAGCTAAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGGAAGAGGACATGCATGCAGAGGCTACAGGTATAAGCTAAGTC  200

seq1  TTTACAGTTGACTGCTGAACTGGCTATGACGCCCGTTGTGCTGGTGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTTGACTGCTGAACTGGCTATGACGCCCGTTGTGCTGGTGACAG  250

seq1  GACTAGCAACTATTGTTATCTGGAGACGTCATCCTCCTGCCCCAGGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGCAACTATTGTTATCTGGAGACGTCATCCTCCTGCCCCAGGACCT  300

seq1  ACTTGCAGCACAACACATAGGATGCTTTTTTATCTTCACAAAAGAATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAGCACAACACATAGGATGCTTTTTTATCTTCACAAAAGAATAAG  350

seq1  AGTTCACTCTCAGTGATCAGTCATCACAGCGAGCAGAGGTGGCCTCGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACTCTCAGTGATCAGTCATCACAGCGAGCAGAGGTGGCCTCGCTG  400

seq1  GCTTTTTTCAAACTGCTTGTACTTAAGCATCAACTAACTTACACTATCCC  450
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  GCTTTTTTC-AACTGCTTGTACTTAAGCATCAACT-ACTTACACTATCCC  448

seq1  TTAAGTTCTGGATGAGAAAGGCACCTTCAAAGGCAGAGATGTAGATTTCC  500
      ||||||||||| ||||||||||||||||||| |||||||||| || ||||
seq2  TTAAGTTCTGG-TGAGAAAGGCACCTTCAAA-GCAGAGATGT-GAATTCC  495

seq1  ATCAGTCTCAGCGTCAGCTGCAGCTCTGCTGATCACACCACAAGAGTGAG  550
      |||||||||||||||||| | |||||||||||| || |||| ||| ||||
seq2  ATCAGTCTCAGCGTCAGC-GGAGCTCTGCTGAT-AC-CCAC-AGAATGAG  541

seq1  TGACGCCAGCAGCTAGCTCAAACTTTAGAGATCTGTCCTTTATCCTTCGA  600
      |||||||| ||| ||| ||||   |||||||||||  | |||| ||||||
seq2  TGACGCCA-CAG-TAG-TCAA--CTTAGAGATCTG--CCTTAT-CTTCGA  583

seq1  GGCTCTTAGTCAAGATCTTGTTCTTATGAACACACTTGGGGCACAGCATG  650
       |||| ||||| |||   ||||||    |  |||||||||  |||||| |
seq2  -GCTC-TAGTC-AGA--CTGTTCT----AGAACACTTGGG--ACAGCA-G  621

seq1  TTGTCCTCCAGGTGTGGGGGTGGAAATGTGCAG  683
      ||| ||||     ||||||||||||   |||||
seq2  TTG-CCTC----AGTGGGGGTGGAA---TGCAG  646